Wall clock time and date at job start Tue Mar 31 2020 22:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99663 * 2 1 4 4 H 1.48497 * 109.47293 * 274.92394 * 3 2 1 5 5 H 1.48492 * 109.47286 * 34.93147 * 3 2 1 6 6 H 1.48507 * 109.46767 * 154.92816 * 3 2 1 7 7 C 1.37878 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99623 * 4.97656 * 7 2 1 9 9 C 1.50699 * 119.99861 * 184.98293 * 7 2 1 10 10 H 1.08993 * 109.47063 * 325.01624 * 9 7 2 11 11 N 1.46497 * 109.47149 * 85.01907 * 9 7 2 12 12 C 1.34784 * 119.99941 * 204.99857 * 11 9 7 13 13 O 1.21588 * 119.99388 * 5.18551 * 12 11 9 14 14 N 1.34774 * 119.99643 * 185.18607 * 12 11 9 15 15 C 1.47150 * 120.98725 * 355.01576 * 14 12 11 16 16 C 1.53290 * 108.38340 * 129.47567 * 15 14 12 17 17 O 1.42966 * 109.22590 * 52.30357 * 16 15 14 18 18 C 1.42959 * 114.16381 * 297.42008 * 17 16 15 19 19 H 1.09004 * 109.51282 * 302.60101 * 18 17 16 20 20 C 1.52999 * 109.50965 * 182.50123 * 18 17 16 21 21 C 1.50705 * 109.47334 * 65.10313 * 20 18 17 22 22 N 1.34771 * 120.00131 * 179.97438 * 21 20 18 23 23 O 1.21282 * 119.99683 * 359.97438 * 21 20 18 24 24 C 1.47174 * 120.93817 * 174.99178 * 14 12 11 25 25 C 1.52999 * 109.46924 * 205.01529 * 9 7 2 26 26 F 1.39900 * 109.47155 * 304.88821 * 25 9 7 27 27 F 1.39908 * 109.47130 * 64.88031 * 25 9 7 28 28 F 1.39900 * 109.47385 * 184.88062 * 25 9 7 29 29 H 0.97000 * 120.00299 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99952 * 25.00051 * 11 9 7 31 31 H 1.09001 * 109.67927 * 9.75332 * 15 14 12 32 32 H 1.09000 * 109.67991 * 249.19858 * 15 14 12 33 33 H 1.09004 * 109.51721 * 292.37568 * 16 15 14 34 34 H 1.09007 * 109.55450 * 172.25176 * 16 15 14 35 35 H 1.08998 * 109.47384 * 305.09622 * 20 18 17 36 36 H 1.09004 * 109.46820 * 185.09880 * 20 18 17 37 37 H 0.97003 * 120.00297 * 359.97438 * 22 21 20 38 38 H 0.96998 * 120.00178 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.64108 * 110.77858 * 24 14 12 40 40 H 1.09002 * 109.72480 * 350.21942 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3925 2.1066 -1.3949 5 1 1.5025 2.6203 0.8016 6 1 3.5949 1.4124 0.5933 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0821 9 6 3.5073 -1.1965 0.1128 10 1 3.9125 -0.3301 -0.4098 11 7 3.8905 -1.1378 1.5256 12 6 5.0903 -0.6348 1.8780 13 8 5.8151 -0.1436 1.0344 14 7 5.4864 -0.6763 3.1656 15 6 4.5845 -1.1657 4.2203 16 6 5.3328 -2.2178 5.0466 17 8 6.5817 -1.6742 5.4810 18 6 7.4724 -1.3309 4.4168 19 1 7.6617 -2.2111 3.8022 20 6 8.7920 -0.8210 4.9994 21 6 9.4770 -1.9375 5.7445 22 7 10.6638 -1.7186 6.3446 23 8 8.9603 -3.0332 5.8041 24 6 6.8343 -0.2338 3.5572 25 6 4.0639 -2.4765 -0.5138 26 9 3.4597 -3.5885 0.0824 27 9 3.7939 -2.4792 -1.8866 28 9 5.4469 -2.5321 -0.3105 29 1 -0.4850 0.8400 0.0004 30 1 3.2809 -1.4610 2.2073 31 1 3.7003 -1.6149 3.7679 32 1 4.2877 -0.3369 4.8632 33 1 5.5136 -3.1010 4.4338 34 1 4.7340 -2.4935 5.9148 35 1 8.5926 0.0037 5.6836 36 1 9.4362 -0.4748 4.1911 37 1 11.0772 -0.8424 6.2966 38 1 11.1045 -2.4371 6.8245 39 1 6.7641 0.6892 4.1327 40 1 7.4399 -0.0665 2.6665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413645160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:44 Heat of formation + Delta-G solvation = -287.444970 kcal Electronic energy + Delta-G solvation = -31476.667730 eV Core-core repulsion = 26489.603560 eV Total energy + Delta-G solvation = -4987.064170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.90395 -48.41708 -48.39052 -41.62963 -40.52325 -39.31955 -36.70667 -35.78491 -34.67628 -34.48966 -33.80500 -30.99117 -29.97815 -27.63597 -26.91622 -24.64922 -23.62941 -22.62915 -21.32350 -21.01669 -20.20583 -19.35117 -19.15830 -18.57766 -18.40563 -18.27760 -17.74811 -17.65699 -17.21096 -16.42869 -16.39639 -16.00135 -15.70377 -15.63684 -15.52734 -15.28613 -15.16587 -14.90250 -14.81940 -14.67149 -14.59431 -14.52633 -14.37760 -14.28052 -13.63902 -13.40580 -13.01247 -12.97468 -12.79330 -12.55238 -12.30267 -11.94451 -11.86473 -11.77911 -11.30636 -11.09593 -10.99666 -10.95112 -10.57609 -10.22513 -9.47442 -8.55167 -6.74252 1.24024 1.34323 1.45979 1.51639 1.73741 1.89048 2.18344 2.23189 2.59309 2.66481 2.74156 3.02660 3.28510 3.34331 3.58078 3.70167 3.79757 3.91760 4.04154 4.09371 4.23669 4.38121 4.46294 4.50329 4.63346 4.66138 4.77440 4.83402 4.93538 4.99341 5.39952 5.47805 5.78440 5.96794 5.97205 6.13337 6.43656 6.54503 6.96062 6.99776 7.44404 7.52178 8.56690 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.003652 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.272774 B = 7665.257104 C = 8248.689035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.066 3.934 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.229 3.771 10 H 0.079 0.921 11 N -0.727 5.727 12 C 0.697 3.303 13 O -0.622 6.622 14 N -0.637 5.637 15 C 0.073 3.927 16 C 0.056 3.944 17 O -0.375 6.375 18 C 0.095 3.905 19 H 0.041 0.959 20 C -0.129 4.129 21 C 0.514 3.486 22 N -0.839 5.839 23 O -0.589 6.589 24 C 0.103 3.897 25 C 0.441 3.559 26 F -0.187 7.187 27 F -0.186 7.186 28 F -0.194 7.194 29 H 0.280 0.720 30 H 0.404 0.596 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.419 0.581 38 H 0.405 0.595 39 H 0.095 0.905 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.028 2.200 14.042 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.746 3.254 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.124 3.876 10 H 0.097 0.903 11 N -0.385 5.385 12 C 0.399 3.601 13 O -0.503 6.503 14 N -0.375 5.375 15 C -0.050 4.050 16 C -0.022 4.022 17 O -0.293 6.293 18 C 0.035 3.965 19 H 0.059 0.941 20 C -0.168 4.168 21 C 0.300 3.700 22 N -0.404 5.404 23 O -0.469 6.469 24 C -0.020 4.020 25 C 0.385 3.615 26 F -0.168 7.168 27 F -0.168 7.168 28 F -0.175 7.175 29 H 0.090 0.910 30 H 0.244 0.756 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.058 0.942 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.159 0.841 37 H 0.251 0.749 38 H 0.236 0.764 39 H 0.113 0.887 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.957 2.032 13.544 21.797 hybrid contribution -0.002 0.089 -0.250 0.265 sum 16.955 2.121 13.294 21.650 Atomic orbital electron populations 1.69935 1.07654 1.29387 1.46077 1.25506 0.95203 1.01800 0.91575 0.86069 0.80101 0.79764 0.79493 1.19359 1.19668 1.17667 1.20710 0.87407 0.95446 1.54112 0.91523 1.19635 0.96233 0.90097 0.81671 0.90334 1.46514 1.16920 1.66101 1.08966 1.16311 0.82187 0.78786 0.82783 1.90822 1.56230 1.52740 1.50530 1.47412 1.16290 1.68875 1.04900 1.22563 0.93220 0.99256 0.89933 1.22979 0.85181 0.94001 1.00037 1.87933 1.26870 1.82828 1.31708 1.22147 0.89901 0.95871 0.88542 0.94073 1.21723 0.94084 0.98039 1.03000 1.20848 0.81410 0.89216 0.78572 1.43712 1.21900 1.18268 1.56504 1.90766 1.66046 1.27842 1.62227 1.22257 0.82192 0.97627 0.99969 1.21563 0.74880 0.88402 0.76699 1.93081 1.83394 1.56702 1.83667 1.93096 1.93704 1.96914 1.33067 1.93133 1.32636 1.96989 1.94774 0.90985 0.75609 0.88960 0.88548 0.94159 0.85092 0.84795 0.84087 0.74924 0.76431 0.88695 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.12 13.96 21.45 0.30 -48.82 16 2 C 0.07 3.43 5.47 84.65 0.46 3.89 16 3 Si 0.92 41.29 27.19 68.60 1.87 43.15 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.25 -11.63 6.24 99.48 0.62 -11.01 16 7 C -0.54 -27.72 8.69 25.60 0.22 -27.50 16 8 H 0.07 3.76 7.66 -2.91 -0.02 3.74 16 9 C 0.23 10.64 1.40 44.25 0.06 10.70 16 10 H 0.08 3.88 5.09 -2.39 -0.01 3.87 16 11 N -0.73 -29.72 4.79 -461.42 -2.21 -31.93 16 12 C 0.70 27.77 7.38 179.05 1.32 29.09 16 13 O -0.62 -28.68 14.70 -3.99 -0.06 -28.73 16 14 N -0.64 -19.58 3.02 -835.31 -2.52 -22.10 16 15 C 0.07 1.76 6.63 86.35 0.57 2.34 16 16 C 0.06 1.27 6.98 72.08 0.50 1.78 16 17 O -0.37 -9.34 9.63 -135.32 -1.30 -10.64 16 18 C 0.09 2.17 2.32 30.69 0.07 2.24 16 19 H 0.04 1.20 7.96 -2.39 -0.02 1.18 16 20 C -0.13 -1.76 5.41 29.85 0.16 -1.60 16 21 C 0.51 9.46 7.98 87.66 0.70 10.15 16 22 N -0.84 -7.45 8.87 -173.53 -1.54 -8.99 16 23 O -0.59 -17.72 16.26 10.62 0.17 -17.55 16 24 C 0.10 2.52 5.91 86.35 0.51 3.03 16 25 C 0.44 19.88 2.83 71.98 0.20 20.08 16 26 F -0.19 -8.22 16.62 44.97 0.75 -7.47 16 27 F -0.19 -8.46 17.14 44.97 0.77 -7.69 16 28 F -0.19 -8.64 15.76 44.97 0.71 -7.94 16 29 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.40 14.93 6.11 -92.70 -0.57 14.36 16 31 H 0.09 2.23 5.66 -2.39 -0.01 2.21 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 0.54 8.83 -92.71 -0.82 -0.28 16 38 H 0.40 3.32 8.93 -92.71 -0.83 2.49 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 2.47 7.12 -2.39 -0.02 2.45 16 Total: -1.00 -75.45 343.91 0.57 -74.87 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -1.15 Total: 19.62 kcal Atomic # 6 Polarization: 49.41 SS G_CDS: 4.79 Total: 54.21 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -5.97 Total: -111.83 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -1.19 Total: -56.93 kcal Atomic # 9 Polarization: -25.32 SS G_CDS: 2.23 Total: -23.09 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.87 Total: 43.15 kcal Total: -75.45 0.57 -74.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.572 kcal (2) G-P(sol) polarization free energy of solvation -75.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds