Wall clock time and date at job start Tue Mar 31 2020 22:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99712 * 2 1 4 4 H 1.48497 * 109.47076 * 274.80831 * 3 2 1 5 5 H 1.48500 * 109.46867 * 34.80785 * 3 2 1 6 6 H 1.48504 * 109.46722 * 154.80598 * 3 2 1 7 7 C 1.37872 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00322 * 4.82250 * 7 2 1 9 9 C 1.50700 * 119.99596 * 184.83260 * 7 2 1 10 10 H 1.09003 * 109.47486 * 334.87735 * 9 7 2 11 11 N 1.46500 * 109.47346 * 94.88305 * 9 7 2 12 12 C 1.34781 * 119.99891 * 204.99831 * 11 9 7 13 13 O 1.21581 * 119.99885 * 5.24830 * 12 11 9 14 14 N 1.34774 * 119.99660 * 185.25105 * 12 11 9 15 15 C 1.47171 * 120.93774 * 174.99910 * 14 12 11 16 16 C 1.53297 * 108.37386 * 230.47350 * 15 14 12 17 17 O 1.42969 * 109.26525 * 307.77553 * 16 15 14 18 18 C 1.42955 * 114.16769 * 62.55392 * 17 16 15 19 19 H 1.09003 * 109.51071 * 57.34324 * 18 17 16 20 20 C 1.52994 * 109.51545 * 177.44664 * 18 17 16 21 21 C 1.50703 * 109.46885 * 295.00265 * 20 18 17 22 22 N 1.34777 * 119.99628 * 180.02562 * 21 20 18 23 23 O 1.21280 * 120.00313 * 359.97438 * 21 20 18 24 24 C 1.47153 * 120.98422 * 355.01984 * 14 12 11 25 25 C 1.53000 * 109.46952 * 214.88304 * 9 7 2 26 26 F 1.39904 * 109.46973 * 294.98243 * 25 9 7 27 27 F 1.39899 * 109.47284 * 54.97841 * 25 9 7 28 28 F 1.39900 * 109.47578 * 174.98027 * 25 9 7 29 29 H 0.97001 * 120.00296 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99840 * 24.99998 * 11 9 7 31 31 H 1.09004 * 109.64267 * 110.77713 * 15 14 12 32 32 H 1.08993 * 109.72996 * 350.21783 * 15 14 12 33 33 H 1.09004 * 109.51195 * 187.82734 * 16 15 14 34 34 H 1.08992 * 109.51491 * 67.72554 * 16 15 14 35 35 H 1.09000 * 109.47099 * 54.99931 * 20 18 17 36 36 H 1.08997 * 109.47627 * 175.00172 * 20 18 17 37 37 H 0.96991 * 120.00387 * 359.97438 * 22 21 20 38 38 H 0.97002 * 119.99791 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.68258 * 9.75547 * 24 14 12 40 40 H 1.08997 * 109.71080 * 249.21549 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3950 2.1052 -1.3951 5 1 1.5010 2.6212 0.7992 6 1 3.5938 1.4130 0.5960 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0796 9 6 3.5075 -1.1963 0.1094 10 1 3.9003 -0.2486 -0.2592 11 7 3.8944 -1.3731 1.5113 12 6 5.0888 -0.9217 1.9428 13 8 5.8043 -0.2844 1.1944 14 7 5.4900 -1.1769 3.2039 15 6 6.8334 -0.7897 3.6635 16 6 7.4887 -2.0088 4.3226 17 8 6.6061 -2.5404 5.3138 18 6 5.3629 -3.0185 4.7947 19 1 5.5530 -3.7817 4.0400 20 6 4.5318 -3.6186 5.9304 21 6 5.2312 -4.8375 6.4748 22 7 4.6796 -5.5347 7.4878 23 8 6.2898 -5.1916 6.0008 24 6 4.5981 -1.8509 4.1608 25 6 4.0782 -2.3442 -0.7258 26 9 3.6658 -3.5658 -0.1827 27 9 3.6149 -2.2387 -2.0416 28 9 5.4756 -2.2778 -0.7167 29 1 -0.4850 0.8400 0.0004 30 1 3.2909 -1.8150 2.1289 31 1 6.7533 0.0207 4.3881 32 1 7.4336 -0.4649 2.8137 33 1 8.4255 -1.7091 4.7924 34 1 7.6871 -2.7685 3.5668 35 1 4.4158 -2.8812 6.7247 36 1 3.5499 -3.9020 5.5516 37 1 3.8327 -5.2517 7.8667 38 1 5.1299 -6.3190 7.8385 39 1 3.7183 -2.2281 3.6396 40 1 4.2924 -1.1483 4.9361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413645170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:47 Heat of formation + Delta-G solvation = -259.767097 kcal Electronic energy + Delta-G solvation = -31599.893874 eV Core-core repulsion = 26614.029907 eV Total energy + Delta-G solvation = -4985.863967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.04318 -46.56779 -46.52514 -40.40971 -39.47110 -38.13444 -34.96959 -34.44499 -33.87157 -33.03618 -32.48112 -29.75746 -28.35208 -26.70871 -24.96211 -23.58849 -22.19924 -21.08111 -20.54023 -19.53096 -18.61205 -17.68808 -17.53347 -17.35940 -16.99101 -16.76986 -16.65791 -16.51874 -15.78844 -15.13807 -15.02603 -14.89263 -14.73693 -14.30949 -14.07024 -13.55887 -13.45764 -13.38377 -13.24966 -13.01551 -12.96560 -12.74305 -12.68882 -12.64415 -12.46188 -12.19278 -11.84993 -11.71938 -11.33728 -11.17334 -10.72305 -10.70884 -10.13168 -10.07287 -10.05990 -9.88542 -9.82317 -9.60149 -9.00921 -8.56149 -8.16764 -6.56511 -4.71942 2.50292 2.82941 3.11761 3.20674 3.28851 3.33405 3.57341 3.62124 3.95969 4.09704 4.19999 4.52362 4.60663 4.86301 4.91892 4.93333 5.06000 5.15077 5.19187 5.20908 5.24558 5.37911 5.40791 5.44493 5.55914 5.78064 5.80961 5.98177 6.27220 6.54599 6.59409 6.87803 7.06031 7.13936 7.16701 7.31240 7.87328 8.09037 8.48610 8.51803 8.99896 9.09605 10.51411 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003880 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.576246 B = 7215.108556 C = 7251.015078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.101 3.899 3 Si 0.863 3.137 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.215 3.785 10 H 0.094 0.906 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.587 6.587 14 N -0.638 5.638 15 C 0.096 3.904 16 C 0.053 3.947 17 O -0.368 6.368 18 C 0.093 3.907 19 H 0.073 0.927 20 C -0.137 4.137 21 C 0.520 3.480 22 N -0.862 5.862 23 O -0.529 6.529 24 C 0.083 3.917 25 C 0.436 3.564 26 F -0.194 7.194 27 F -0.182 7.182 28 F -0.196 7.196 29 H 0.275 0.725 30 H 0.394 0.606 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.401 0.599 38 H 0.400 0.600 39 H 0.093 0.907 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.128 -5.609 14.508 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.109 4.109 3 Si 0.687 3.313 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.111 0.889 9 C 0.112 3.888 10 H 0.112 0.888 11 N -0.384 5.384 12 C 0.400 3.600 13 O -0.465 6.465 14 N -0.377 5.377 15 C -0.028 4.028 16 C -0.025 4.025 17 O -0.286 6.286 18 C 0.034 3.966 19 H 0.091 0.909 20 C -0.177 4.177 21 C 0.304 3.696 22 N -0.426 5.426 23 O -0.404 6.404 24 C -0.041 4.041 25 C 0.380 3.620 26 F -0.175 7.175 27 F -0.163 7.163 28 F -0.178 7.178 29 H 0.085 0.915 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.229 0.771 38 H 0.230 0.770 39 H 0.111 0.889 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.204 -5.130 13.633 16.250 hybrid contribution -0.284 0.236 0.331 0.496 sum 6.920 -4.894 13.964 16.335 Atomic orbital electron populations 1.69864 1.06443 1.28389 1.44458 1.24989 0.94782 0.99321 0.91788 0.86977 0.81690 0.82847 0.79765 1.19186 1.20502 1.16869 1.20740 0.86369 0.96361 1.53788 0.88909 1.20011 0.97499 0.92249 0.79076 0.88804 1.46896 1.16700 1.62503 1.12295 1.16310 0.82743 0.79929 0.80970 1.90868 1.55865 1.44896 1.54841 1.47339 1.15713 1.63899 1.10777 1.22109 0.83561 0.96897 1.00205 1.22959 0.92879 0.94812 0.91850 1.87928 1.27120 1.80237 1.33347 1.22116 0.84946 0.94746 0.94813 0.90887 1.21696 0.99940 0.96226 0.99871 1.20499 0.85294 0.84397 0.79398 1.43894 1.27292 1.32859 1.38533 1.90780 1.22089 1.68832 1.58723 1.22284 0.93609 0.94940 0.93285 1.21818 0.74935 0.85298 0.79978 1.93060 1.90264 1.48305 1.85904 1.93104 1.88706 1.96193 1.38337 1.93139 1.31584 1.96541 1.96545 0.91464 0.76819 0.91389 0.88068 0.87905 0.92578 0.87570 0.86800 0.77136 0.76995 0.88915 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.16 13.96 55.43 0.77 -22.38 16 2 C 0.10 2.61 5.47 -17.82 -0.10 2.52 16 3 Si 0.86 19.98 27.31 -169.99 -4.64 15.33 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.25 -5.88 6.37 56.52 0.36 -5.52 16 7 C -0.53 -13.47 8.52 -34.44 -0.29 -13.76 16 8 H 0.09 2.51 8.00 -52.49 -0.42 2.09 16 9 C 0.22 4.99 1.70 -69.08 -0.12 4.88 16 10 H 0.09 2.34 4.44 -51.93 -0.23 2.11 16 11 N -0.73 -14.81 4.82 -59.81 -0.29 -15.10 16 12 C 0.70 14.18 7.88 -86.92 -0.69 13.49 16 13 O -0.59 -13.87 14.66 5.29 0.08 -13.80 16 14 N -0.64 -10.21 3.02 -177.99 -0.54 -10.75 16 15 C 0.10 1.33 6.62 -3.52 -0.02 1.30 16 16 C 0.05 0.66 6.98 37.31 0.26 0.92 16 17 O -0.37 -4.89 9.62 -49.60 -0.48 -5.37 16 18 C 0.09 1.11 2.32 -26.58 -0.06 1.05 16 19 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 20 C -0.14 -1.13 5.42 -27.88 -0.15 -1.28 16 21 C 0.52 5.32 7.98 -10.98 -0.09 5.23 16 22 N -0.86 -5.16 8.87 31.22 0.28 -4.88 16 23 O -0.53 -8.07 16.26 -8.81 -0.14 -8.21 16 24 C 0.08 1.03 5.92 -3.53 -0.02 1.00 16 25 C 0.44 9.84 2.83 37.16 0.11 9.95 16 26 F -0.19 -4.19 16.93 2.25 0.04 -4.15 16 27 F -0.18 -4.17 16.89 2.25 0.04 -4.13 16 28 F -0.20 -4.46 16.05 2.25 0.04 -4.42 16 29 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 7.12 6.11 -40.82 -0.25 6.87 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.52 7.12 -51.93 -0.37 1.15 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 1.10 8.83 -40.82 -0.36 0.74 16 38 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 39 H 0.09 1.09 5.66 -51.93 -0.29 0.80 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -34.35 344.83 -5.24 -39.59 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.41 Total: 7.76 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: -1.17 Total: 25.30 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.22 Total: -53.11 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.54 Total: -27.38 kcal Atomic # 9 Polarization: -12.81 SS G_CDS: 0.11 Total: -12.70 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.64 Total: 15.33 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.35 -5.24 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.174 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds