Wall clock time and date at job start Tue Mar 31 2020 22:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99712 * 2 1 4 4 H 1.48497 * 109.47076 * 274.80831 * 3 2 1 5 5 H 1.48500 * 109.46867 * 34.80785 * 3 2 1 6 6 H 1.48504 * 109.46722 * 154.80598 * 3 2 1 7 7 C 1.37872 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00322 * 4.82250 * 7 2 1 9 9 C 1.50700 * 119.99596 * 184.83260 * 7 2 1 10 10 H 1.09003 * 109.47486 * 334.87735 * 9 7 2 11 11 N 1.46500 * 109.47346 * 94.88305 * 9 7 2 12 12 C 1.34781 * 119.99891 * 204.99831 * 11 9 7 13 13 O 1.21581 * 119.99885 * 5.24830 * 12 11 9 14 14 N 1.34774 * 119.99660 * 185.25105 * 12 11 9 15 15 C 1.47171 * 120.93774 * 174.99910 * 14 12 11 16 16 C 1.53297 * 108.37386 * 230.47350 * 15 14 12 17 17 O 1.42969 * 109.26525 * 307.77553 * 16 15 14 18 18 C 1.42955 * 114.16769 * 62.55392 * 17 16 15 19 19 H 1.09003 * 109.51071 * 57.34324 * 18 17 16 20 20 C 1.52994 * 109.51545 * 177.44664 * 18 17 16 21 21 C 1.50703 * 109.46885 * 295.00265 * 20 18 17 22 22 N 1.34777 * 119.99628 * 180.02562 * 21 20 18 23 23 O 1.21280 * 120.00313 * 359.97438 * 21 20 18 24 24 C 1.47153 * 120.98422 * 355.01984 * 14 12 11 25 25 C 1.53000 * 109.46952 * 214.88304 * 9 7 2 26 26 F 1.39904 * 109.46973 * 294.98243 * 25 9 7 27 27 F 1.39899 * 109.47284 * 54.97841 * 25 9 7 28 28 F 1.39900 * 109.47578 * 174.98027 * 25 9 7 29 29 H 0.97001 * 120.00296 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99840 * 24.99998 * 11 9 7 31 31 H 1.09004 * 109.64267 * 110.77713 * 15 14 12 32 32 H 1.08993 * 109.72996 * 350.21783 * 15 14 12 33 33 H 1.09004 * 109.51195 * 187.82734 * 16 15 14 34 34 H 1.08992 * 109.51491 * 67.72554 * 16 15 14 35 35 H 1.09000 * 109.47099 * 54.99931 * 20 18 17 36 36 H 1.08997 * 109.47627 * 175.00172 * 20 18 17 37 37 H 0.96991 * 120.00387 * 359.97438 * 22 21 20 38 38 H 0.97002 * 119.99791 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.68258 * 9.75547 * 24 14 12 40 40 H 1.08997 * 109.71080 * 249.21549 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3950 2.1052 -1.3951 5 1 1.5010 2.6212 0.7992 6 1 3.5938 1.4130 0.5960 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0796 9 6 3.5075 -1.1963 0.1094 10 1 3.9003 -0.2486 -0.2592 11 7 3.8944 -1.3731 1.5113 12 6 5.0888 -0.9217 1.9428 13 8 5.8043 -0.2844 1.1944 14 7 5.4900 -1.1769 3.2039 15 6 6.8334 -0.7897 3.6635 16 6 7.4887 -2.0088 4.3226 17 8 6.6061 -2.5404 5.3138 18 6 5.3629 -3.0185 4.7947 19 1 5.5530 -3.7817 4.0400 20 6 4.5318 -3.6186 5.9304 21 6 5.2312 -4.8375 6.4748 22 7 4.6796 -5.5347 7.4878 23 8 6.2898 -5.1916 6.0008 24 6 4.5981 -1.8509 4.1608 25 6 4.0782 -2.3442 -0.7258 26 9 3.6658 -3.5658 -0.1827 27 9 3.6149 -2.2387 -2.0416 28 9 5.4756 -2.2778 -0.7167 29 1 -0.4850 0.8400 0.0004 30 1 3.2909 -1.8150 2.1289 31 1 6.7533 0.0207 4.3881 32 1 7.4336 -0.4649 2.8137 33 1 8.4255 -1.7091 4.7924 34 1 7.6871 -2.7685 3.5668 35 1 4.4158 -2.8812 6.7247 36 1 3.5499 -3.9020 5.5516 37 1 3.8327 -5.2517 7.8667 38 1 5.1299 -6.3190 7.8385 39 1 3.7183 -2.2281 3.6396 40 1 4.2924 -1.1483 4.9361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413645170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:46 Heat of formation + Delta-G solvation = -287.403808 kcal Electronic energy + Delta-G solvation = -31601.092292 eV Core-core repulsion = 26614.029907 eV Total energy + Delta-G solvation = -4987.062385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.88014 -48.39604 -48.36616 -41.63503 -40.50129 -39.31345 -36.70552 -35.77502 -34.63359 -34.51281 -33.78244 -31.27326 -29.57683 -27.81589 -26.88942 -24.68550 -23.50520 -22.65980 -21.31610 -21.05547 -20.16564 -19.34954 -19.15845 -18.57738 -18.43459 -18.11600 -17.87407 -17.63851 -17.17857 -16.47266 -16.40928 -15.99389 -15.67772 -15.61357 -15.43202 -15.27961 -15.21675 -14.89404 -14.82573 -14.62885 -14.57625 -14.52243 -14.37399 -14.22708 -13.70198 -13.39506 -13.04687 -12.97077 -12.78244 -12.56845 -12.29165 -11.93724 -11.83978 -11.75397 -11.32235 -11.09749 -10.98786 -10.93234 -10.55308 -10.21647 -9.47453 -8.55217 -6.73670 1.23929 1.34070 1.45647 1.49772 1.76271 1.89850 2.18091 2.22563 2.55913 2.69409 2.75456 3.01553 3.34765 3.35728 3.61643 3.67385 3.77856 3.95271 4.05579 4.12658 4.25775 4.37022 4.43827 4.53059 4.59162 4.66269 4.79523 4.84219 4.94305 5.00383 5.40520 5.47723 5.78576 5.98204 5.98787 6.13393 6.43819 6.56793 6.96898 7.00764 7.46540 7.52120 8.56645 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003880 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.576246 B = 7215.108556 C = 7251.015078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.224 3.776 10 H 0.080 0.920 11 N -0.724 5.724 12 C 0.694 3.306 13 O -0.624 6.624 14 N -0.635 5.635 15 C 0.095 3.905 16 C 0.058 3.942 17 O -0.374 6.374 18 C 0.094 3.906 19 H 0.044 0.956 20 C -0.131 4.131 21 C 0.514 3.486 22 N -0.840 5.840 23 O -0.590 6.590 24 C 0.080 3.920 25 C 0.436 3.564 26 F -0.187 7.187 27 F -0.184 7.184 28 F -0.196 7.196 29 H 0.281 0.719 30 H 0.406 0.594 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.037 0.963 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.419 0.581 38 H 0.404 0.596 39 H 0.098 0.902 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -5.247 16.722 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.119 3.881 10 H 0.098 0.902 11 N -0.381 5.381 12 C 0.396 3.604 13 O -0.505 6.505 14 N -0.373 5.373 15 C -0.028 4.028 16 C -0.019 4.019 17 O -0.293 6.293 18 C 0.034 3.966 19 H 0.062 0.938 20 C -0.171 4.171 21 C 0.299 3.701 22 N -0.404 5.404 23 O -0.470 6.470 24 C -0.043 4.043 25 C 0.380 3.620 26 F -0.169 7.169 27 F -0.166 7.166 28 F -0.178 7.178 29 H 0.091 0.909 30 H 0.246 0.754 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.055 0.945 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.903 -4.797 15.941 18.022 hybrid contribution -0.178 0.018 -0.281 0.333 sum 6.725 -4.779 15.661 17.701 Atomic orbital electron populations 1.69916 1.07469 1.29363 1.46018 1.25464 0.95190 1.01507 0.91605 0.86181 0.79929 0.80326 0.79704 1.19067 1.19336 1.18250 1.20641 0.87150 0.95434 1.53945 0.91286 1.19706 0.96207 0.91889 0.80333 0.90226 1.46385 1.17433 1.62893 1.11436 1.16361 0.82181 0.79670 0.82144 1.90839 1.56730 1.46542 1.56412 1.47398 1.16962 1.63154 1.09807 1.22266 0.82303 0.98137 1.00047 1.22964 0.93796 0.93594 0.91574 1.87934 1.27697 1.80126 1.33535 1.22150 0.84932 0.93773 0.95739 0.93752 1.21762 1.00048 0.95852 0.99410 1.20873 0.84658 0.84915 0.79632 1.43727 1.27641 1.32134 1.36938 1.90763 1.24786 1.70554 1.60856 1.22564 0.93096 0.95502 0.93100 1.21745 0.74921 0.85468 0.79825 1.93069 1.90198 1.47848 1.85790 1.93097 1.88738 1.96227 1.38542 1.93140 1.31548 1.96562 1.96534 0.90933 0.75423 0.89259 0.89638 0.85238 0.94474 0.84751 0.83779 0.74926 0.76486 0.88419 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.96 13.96 21.45 0.30 -47.67 16 2 C 0.07 3.56 5.47 84.65 0.46 4.02 16 3 Si 0.91 40.98 27.31 68.60 1.87 42.85 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.26 -12.09 6.37 99.48 0.63 -11.46 16 7 C -0.53 -26.89 8.52 25.60 0.22 -26.67 16 8 H 0.07 3.78 8.00 -2.91 -0.02 3.75 16 9 C 0.22 10.35 1.70 44.25 0.08 10.42 16 10 H 0.08 3.96 4.44 -2.39 -0.01 3.95 16 11 N -0.72 -28.98 4.82 -461.41 -2.23 -31.21 16 12 C 0.69 27.72 7.88 179.05 1.41 29.13 16 13 O -0.62 -29.49 14.66 -3.97 -0.06 -29.54 16 14 N -0.64 -19.44 3.02 -835.30 -2.52 -21.96 16 15 C 0.10 2.51 6.62 86.35 0.57 3.08 16 16 C 0.06 1.38 6.98 72.08 0.50 1.89 16 17 O -0.37 -9.29 9.62 -135.24 -1.30 -10.59 16 18 C 0.09 2.06 2.32 30.69 0.07 2.13 16 19 H 0.04 1.24 7.96 -2.39 -0.02 1.22 16 20 C -0.13 -1.74 5.42 29.85 0.16 -1.58 16 21 C 0.51 9.51 7.98 87.66 0.70 10.21 16 22 N -0.84 -7.86 8.87 -173.53 -1.54 -9.40 16 23 O -0.59 -17.76 16.26 10.71 0.17 -17.59 16 24 C 0.08 1.78 5.92 86.36 0.51 2.29 16 25 C 0.44 19.66 2.83 71.98 0.20 19.86 16 26 F -0.19 -8.03 16.93 44.97 0.76 -7.27 16 27 F -0.18 -8.44 16.89 44.97 0.76 -7.68 16 28 F -0.20 -8.89 16.05 44.97 0.72 -8.16 16 29 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.41 14.20 6.11 -92.71 -0.57 13.63 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.54 7.12 -2.39 -0.02 2.53 16 33 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.42 0.81 8.83 -92.71 -0.82 0.00 16 38 H 0.40 3.53 8.93 -92.71 -0.83 2.71 16 39 H 0.10 2.06 5.66 -2.39 -0.01 2.05 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -75.19 344.83 0.70 -74.50 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -1.14 Total: 18.95 kcal Atomic # 6 Polarization: 49.89 SS G_CDS: 4.89 Total: 54.78 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -5.99 Total: -110.24 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -1.19 Total: -57.72 kcal Atomic # 9 Polarization: -25.36 SS G_CDS: 2.24 Total: -23.11 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.87 Total: 42.85 kcal Total: -75.19 0.70 -74.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.909 kcal (2) G-P(sol) polarization free energy of solvation -75.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds