Wall clock time and date at job start Tue Mar 31 2020 22:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86810 * 120.00064 * 2 1 4 4 H 1.48498 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46727 * 299.99800 * 3 2 1 6 6 H 1.48498 * 109.46961 * 59.99536 * 3 2 1 7 7 C 1.37873 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00074 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46966 * 300.00376 * 9 7 2 11 11 N 1.46498 * 109.47380 * 180.02562 * 9 7 2 12 12 C 1.34778 * 120.00232 * 154.99929 * 11 9 7 13 13 O 1.21585 * 119.99929 * 4.98493 * 12 11 9 14 14 N 1.34774 * 119.99823 * 184.98226 * 12 11 9 15 15 C 1.47263 * 120.96145 * 355.03885 * 14 12 11 16 16 C 1.53294 * 108.32630 * 129.46735 * 15 14 12 17 17 O 1.42959 * 109.26316 * 52.28459 * 16 15 14 18 18 C 1.42961 * 114.16681 * 297.38963 * 17 16 15 19 19 H 1.08998 * 109.51514 * 302.65925 * 18 17 16 20 20 C 1.53005 * 109.51152 * 182.55694 * 18 17 16 21 21 C 1.50700 * 109.46874 * 65.00281 * 20 18 17 22 22 N 1.34774 * 119.99984 * 179.97438 * 21 20 18 23 23 O 1.21283 * 120.00091 * 359.97438 * 21 20 18 24 24 C 1.47156 * 120.97729 * 175.01430 * 14 12 11 25 25 C 1.53003 * 109.47107 * 59.99846 * 9 7 2 26 26 F 1.39897 * 109.46881 * 180.02562 * 25 9 7 27 27 F 1.39894 * 109.46962 * 300.00260 * 25 9 7 28 28 F 1.39890 * 109.46727 * 60.00397 * 25 9 7 29 29 H 0.97006 * 120.00368 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99893 * 334.99439 * 11 9 7 31 31 H 1.08999 * 109.74467 * 9.73445 * 15 14 12 32 32 H 1.09005 * 109.67034 * 249.15350 * 15 14 12 33 33 H 1.08992 * 109.51100 * 292.33264 * 16 15 14 34 34 H 1.09001 * 109.51038 * 172.22969 * 16 15 14 35 35 H 1.08993 * 109.47100 * 185.00228 * 20 18 17 36 36 H 1.09000 * 109.47043 * 305.00082 * 20 18 17 37 37 H 0.97004 * 119.99769 * 359.97438 * 22 21 20 38 38 H 0.97000 * 120.00192 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.68453 * 110.83788 * 24 14 12 40 40 H 1.08993 * 109.68530 * 350.27851 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6239 -2.5566 0.8903 11 7 2.2030 -3.6126 0.0018 12 6 1.8365 -4.8120 0.4953 13 8 0.6901 -4.9965 0.8558 14 7 2.7409 -5.8069 0.5892 15 6 4.1053 -5.6429 0.0601 16 6 5.0989 -6.0468 1.1553 17 8 4.7590 -7.3464 1.6445 18 6 3.4718 -7.4212 2.2620 19 1 3.4198 -6.7061 3.0830 20 6 3.2448 -8.8352 2.8006 21 6 4.2325 -9.1172 3.9034 22 7 4.2197 -10.3099 4.5307 23 8 5.0388 -8.2708 4.2263 24 6 2.3940 -7.0884 1.2239 25 6 0.3719 -2.5805 -1.2490 26 9 -0.3280 -3.7918 -1.2487 27 9 -0.5372 -1.5171 -1.2496 28 9 1.1766 -2.5066 -2.3909 29 1 -0.4851 0.8401 -0.0004 30 1 3.0971 -3.4867 -0.3527 31 1 4.2694 -4.6020 -0.2189 32 1 4.2401 -6.2828 -0.8121 33 1 5.0527 -5.3267 1.9722 34 1 6.1077 -6.0653 0.7429 35 1 2.2307 -8.9166 3.1915 36 1 3.3829 -9.5571 1.9957 37 1 3.5745 -10.9868 4.2726 38 1 4.8556 -10.4916 5.2403 39 1 2.3565 -7.8738 0.4690 40 1 1.4247 -7.0043 1.7152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413645190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:50 Heat of formation + Delta-G solvation = -236.104782 kcal Electronic energy + Delta-G solvation = -31234.009595 eV Core-core repulsion = 26249.171703 eV Total energy + Delta-G solvation = -4984.837892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.30439 -45.95417 -45.57658 -40.39729 -39.47979 -38.10839 -34.81852 -34.44190 -33.90812 -33.09628 -32.39737 -29.02480 -28.66246 -26.37449 -24.54190 -23.63419 -22.27278 -21.12240 -20.54095 -19.45056 -18.40952 -17.57508 -17.03318 -16.93022 -16.77651 -16.66908 -16.58459 -15.92843 -15.40989 -15.19979 -15.05767 -14.76422 -14.75919 -14.51017 -13.92921 -13.41729 -13.34201 -13.07214 -12.84365 -12.61983 -12.45081 -12.35203 -12.28649 -12.16587 -12.00542 -11.82259 -11.65514 -11.35781 -11.17313 -10.87371 -10.80514 -10.71909 -10.38703 -10.14559 -10.04455 -9.90928 -9.64498 -9.53568 -8.73541 -8.48391 -8.09944 -6.23983 -4.47930 2.47932 2.85232 3.17746 3.25224 3.27996 3.29725 3.61255 3.68875 4.16245 4.34467 4.53505 4.62259 4.63465 4.86408 4.93677 4.95358 5.02318 5.16089 5.20204 5.32582 5.42445 5.62478 5.70321 5.76461 5.87071 5.90983 5.95923 6.23272 6.51811 6.54685 6.83602 7.03899 7.12801 7.17989 7.32131 7.57531 7.63523 8.06629 8.47395 8.55758 9.09951 9.22206 10.67667 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.003098 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.642459 B = 9036.093875 C = 9670.264349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.084 0.916 11 N -0.725 5.725 12 C 0.704 3.296 13 O -0.579 6.579 14 N -0.638 5.638 15 C 0.076 3.924 16 C 0.053 3.947 17 O -0.368 6.368 18 C 0.092 3.908 19 H 0.072 0.928 20 C -0.135 4.135 21 C 0.519 3.481 22 N -0.862 5.862 23 O -0.528 6.528 24 C 0.105 3.895 25 C 0.416 3.584 26 F -0.215 7.215 27 F -0.138 7.138 28 F -0.211 7.211 29 H 0.268 0.732 30 H 0.393 0.607 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.400 0.600 38 H 0.400 0.600 39 H 0.069 0.931 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.631 -17.242 3.633 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.101 0.899 11 N -0.379 5.379 12 C 0.406 3.594 13 O -0.456 6.456 14 N -0.378 5.378 15 C -0.048 4.048 16 C -0.025 4.025 17 O -0.287 6.287 18 C 0.032 3.968 19 H 0.090 0.910 20 C -0.175 4.175 21 C 0.304 3.696 22 N -0.426 5.426 23 O -0.403 6.403 24 C -0.019 4.019 25 C 0.359 3.641 26 F -0.197 7.197 27 F -0.119 7.119 28 F -0.193 7.193 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.228 0.772 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.115 -16.668 3.933 18.545 hybrid contribution 0.454 0.629 -0.408 0.877 sum 7.569 -16.038 3.525 18.082 Atomic orbital electron populations 1.70414 1.05845 1.27260 1.43682 1.25074 0.95153 1.00088 0.94048 0.86158 0.79800 0.81971 0.77890 1.19403 1.20561 1.20551 1.20904 0.93788 0.88074 1.56151 0.90491 1.19621 0.88213 0.84926 0.91629 0.89868 1.45432 1.17416 1.09618 1.65482 1.15937 0.84193 0.80358 0.78923 1.90912 1.17252 1.81519 1.55896 1.47233 1.11893 1.14718 1.63923 1.22351 0.82413 1.02750 0.97245 1.22911 0.98166 0.85375 0.95998 1.87927 1.33812 1.29967 1.76948 1.22179 0.84017 0.95807 0.94784 0.90969 1.21667 0.99917 0.98114 0.97840 1.20519 0.84711 0.81725 0.82691 1.43899 1.40263 1.17133 1.41333 1.90784 1.39055 1.45601 1.64889 1.22034 0.99343 0.84843 0.95661 1.23140 0.80916 0.72857 0.87143 1.93079 1.81384 1.48263 1.96952 1.93398 1.68422 1.53866 1.96205 1.92978 1.74442 1.96201 1.55637 0.92160 0.77076 0.89127 0.90760 0.92323 0.87825 0.86967 0.87626 0.77187 0.76991 0.91247 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.01 9.50 55.43 0.53 -22.48 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.55 -14.08 8.46 -34.44 -0.29 -14.37 16 8 H 0.08 1.85 7.74 -52.48 -0.41 1.45 16 9 C 0.26 6.57 2.20 -69.08 -0.15 6.42 16 10 H 0.08 2.34 7.65 -51.92 -0.40 1.94 16 11 N -0.73 -15.15 4.90 -59.81 -0.29 -15.44 16 12 C 0.70 14.40 7.92 -86.92 -0.69 13.71 16 13 O -0.58 -13.89 14.20 5.29 0.08 -13.82 16 14 N -0.64 -10.01 3.02 -177.91 -0.54 -10.54 16 15 C 0.08 0.94 6.64 -3.47 -0.02 0.92 16 16 C 0.05 0.62 6.98 37.31 0.26 0.88 16 17 O -0.37 -4.76 9.62 -49.62 -0.48 -5.24 16 18 C 0.09 1.09 2.32 -26.57 -0.06 1.03 16 19 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 20 C -0.13 -1.09 5.42 -27.88 -0.15 -1.24 16 21 C 0.52 5.16 7.98 -10.99 -0.09 5.07 16 22 N -0.86 -4.83 8.87 31.22 0.28 -4.55 16 23 O -0.53 -7.91 16.26 -8.83 -0.14 -8.06 16 24 C 0.11 1.37 5.91 -3.53 -0.02 1.35 16 25 C 0.42 10.81 2.81 37.16 0.10 10.91 16 26 F -0.21 -5.59 15.48 2.25 0.03 -5.56 16 27 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 28 F -0.21 -5.26 16.94 2.25 0.04 -5.22 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 30 H 0.39 7.13 6.05 -40.82 -0.25 6.89 16 31 H 0.09 1.08 5.67 -51.93 -0.29 0.78 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 0.91 8.83 -40.82 -0.36 0.55 16 38 H 0.40 2.01 8.93 -40.82 -0.36 1.65 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.43 7.12 -51.93 -0.37 1.06 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -35.41 341.52 -6.07 -41.48 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.52 Total: 6.76 kcal Atomic # 6 Polarization: 27.48 SS G_CDS: -1.20 Total: 26.28 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.03 Total: -53.02 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.55 Total: -27.12 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.41 -6.07 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.625 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds