Wall clock time and date at job start Tue Mar 31 2020 22:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86810 * 120.00064 * 2 1 4 4 H 1.48498 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46727 * 299.99800 * 3 2 1 6 6 H 1.48498 * 109.46961 * 59.99536 * 3 2 1 7 7 C 1.37873 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00248 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00074 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46966 * 300.00376 * 9 7 2 11 11 N 1.46498 * 109.47380 * 180.02562 * 9 7 2 12 12 C 1.34778 * 120.00232 * 154.99929 * 11 9 7 13 13 O 1.21585 * 119.99929 * 4.98493 * 12 11 9 14 14 N 1.34774 * 119.99823 * 184.98226 * 12 11 9 15 15 C 1.47263 * 120.96145 * 355.03885 * 14 12 11 16 16 C 1.53294 * 108.32630 * 129.46735 * 15 14 12 17 17 O 1.42959 * 109.26316 * 52.28459 * 16 15 14 18 18 C 1.42961 * 114.16681 * 297.38963 * 17 16 15 19 19 H 1.08998 * 109.51514 * 302.65925 * 18 17 16 20 20 C 1.53005 * 109.51152 * 182.55694 * 18 17 16 21 21 C 1.50700 * 109.46874 * 65.00281 * 20 18 17 22 22 N 1.34774 * 119.99984 * 179.97438 * 21 20 18 23 23 O 1.21283 * 120.00091 * 359.97438 * 21 20 18 24 24 C 1.47156 * 120.97729 * 175.01430 * 14 12 11 25 25 C 1.53003 * 109.47107 * 59.99846 * 9 7 2 26 26 F 1.39897 * 109.46881 * 180.02562 * 25 9 7 27 27 F 1.39894 * 109.46962 * 300.00260 * 25 9 7 28 28 F 1.39890 * 109.46727 * 60.00397 * 25 9 7 29 29 H 0.97006 * 120.00368 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99893 * 334.99439 * 11 9 7 31 31 H 1.08999 * 109.74467 * 9.73445 * 15 14 12 32 32 H 1.09005 * 109.67034 * 249.15350 * 15 14 12 33 33 H 1.08992 * 109.51100 * 292.33264 * 16 15 14 34 34 H 1.09001 * 109.51038 * 172.22969 * 16 15 14 35 35 H 1.08993 * 109.47100 * 185.00228 * 20 18 17 36 36 H 1.09000 * 109.47043 * 305.00082 * 20 18 17 37 37 H 0.97004 * 119.99769 * 359.97438 * 22 21 20 38 38 H 0.97000 * 120.00192 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.68453 * 110.83788 * 24 14 12 40 40 H 1.08993 * 109.68530 * 350.27851 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6239 -2.5566 0.8903 11 7 2.2030 -3.6126 0.0018 12 6 1.8365 -4.8120 0.4953 13 8 0.6901 -4.9965 0.8558 14 7 2.7409 -5.8069 0.5892 15 6 4.1053 -5.6429 0.0601 16 6 5.0989 -6.0468 1.1553 17 8 4.7590 -7.3464 1.6445 18 6 3.4718 -7.4212 2.2620 19 1 3.4198 -6.7061 3.0830 20 6 3.2448 -8.8352 2.8006 21 6 4.2325 -9.1172 3.9034 22 7 4.2197 -10.3099 4.5307 23 8 5.0388 -8.2708 4.2263 24 6 2.3940 -7.0884 1.2239 25 6 0.3719 -2.5805 -1.2490 26 9 -0.3280 -3.7918 -1.2487 27 9 -0.5372 -1.5171 -1.2496 28 9 1.1766 -2.5066 -2.3909 29 1 -0.4851 0.8401 -0.0004 30 1 3.0971 -3.4867 -0.3527 31 1 4.2694 -4.6020 -0.2189 32 1 4.2401 -6.2828 -0.8121 33 1 5.0527 -5.3267 1.9722 34 1 6.1077 -6.0653 0.7429 35 1 2.2307 -8.9166 3.1915 36 1 3.3829 -9.5571 1.9957 37 1 3.5745 -10.9868 4.2726 38 1 4.8556 -10.4916 5.2403 39 1 2.3565 -7.8738 0.4690 40 1 1.4247 -7.0043 1.7152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413645190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:49 Heat of formation + Delta-G solvation = -264.330079 kcal Electronic energy + Delta-G solvation = -31235.233536 eV Core-core repulsion = 26249.171703 eV Total energy + Delta-G solvation = -4986.061833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.39595 -48.02662 -47.71069 -41.61015 -40.50088 -39.28493 -36.60197 -35.77519 -34.66468 -34.46758 -33.74862 -30.44606 -29.95643 -27.60764 -26.55870 -24.62734 -23.79505 -22.63539 -21.31008 -21.00884 -19.82888 -18.90759 -18.76183 -18.61166 -18.26417 -17.90634 -17.64193 -17.51499 -17.01571 -16.56684 -16.40533 -15.99739 -15.69574 -15.60407 -15.27590 -15.02788 -14.94788 -14.58701 -14.43929 -14.37253 -14.29553 -14.27197 -14.02246 -13.90019 -13.39893 -13.05068 -12.97172 -12.78105 -12.70264 -12.65279 -12.28165 -12.18906 -11.77491 -11.55336 -11.25793 -11.07626 -10.94308 -10.70314 -10.56143 -10.17292 -9.45594 -8.21753 -6.52765 1.44700 1.46464 1.51757 1.61448 1.75173 2.05188 2.35532 2.55280 2.64829 2.74580 2.89591 2.94545 3.70361 3.78708 3.81085 3.87115 3.92062 4.05949 4.10259 4.17648 4.27287 4.46546 4.49382 4.64642 4.66979 4.78301 4.82688 4.89144 5.01118 5.38392 5.40652 5.54501 5.64437 5.91660 5.98176 6.15351 6.52257 6.55804 6.96844 7.17701 7.45716 7.55027 8.71294 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.003098 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.642459 B = 9036.093875 C = 9670.264349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.091 0.909 9 C 0.271 3.729 10 H 0.045 0.955 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.621 6.621 14 N -0.633 5.633 15 C 0.074 3.926 16 C 0.054 3.946 17 O -0.375 6.375 18 C 0.096 3.904 19 H 0.042 0.958 20 C -0.129 4.129 21 C 0.514 3.486 22 N -0.840 5.840 23 O -0.589 6.589 24 C 0.103 3.897 25 C 0.413 3.587 26 F -0.217 7.217 27 F -0.151 7.151 28 F -0.204 7.204 29 H 0.269 0.731 30 H 0.407 0.593 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.419 0.581 38 H 0.405 0.595 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.347 -18.575 3.116 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.598 4.598 8 H 0.109 0.891 9 C 0.163 3.837 10 H 0.063 0.937 11 N -0.376 5.376 12 C 0.400 3.600 13 O -0.502 6.502 14 N -0.371 5.371 15 C -0.049 4.049 16 C -0.023 4.023 17 O -0.293 6.293 18 C 0.036 3.964 19 H 0.060 0.940 20 C -0.169 4.169 21 C 0.300 3.700 22 N -0.404 5.404 23 O -0.468 6.468 24 C -0.020 4.020 25 C 0.357 3.643 26 F -0.199 7.199 27 F -0.132 7.132 28 F -0.186 7.186 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.059 0.941 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.251 0.749 38 H 0.236 0.764 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.873 -18.107 3.416 20.452 hybrid contribution -0.087 0.916 -0.226 0.947 sum 8.786 -17.191 3.190 19.568 Atomic orbital electron populations 1.70538 1.07476 1.28126 1.44628 1.25988 0.95903 1.03634 0.93436 0.85108 0.79146 0.77409 0.77641 1.17855 1.20597 1.20351 1.21234 0.94508 0.88247 1.55837 0.89065 1.19194 0.88331 0.86484 0.89645 0.93742 1.45175 1.17354 1.09105 1.65984 1.16119 0.84380 0.80874 0.78605 1.90875 1.19391 1.82324 1.57573 1.47319 1.12383 1.14322 1.63109 1.22608 0.80453 1.03657 0.98143 1.22996 0.99370 0.84711 0.95220 1.87932 1.34203 1.30333 1.76870 1.22139 0.83296 0.97607 0.93339 0.94029 1.21719 1.00859 0.96158 0.98132 1.20840 0.84220 0.82036 0.82921 1.43716 1.40160 1.16199 1.40327 1.90765 1.41556 1.47654 1.66871 1.22248 0.99161 0.84080 0.96484 1.23298 0.80873 0.72411 0.87753 1.93069 1.81517 1.48321 1.96999 1.93371 1.68978 1.54550 1.96316 1.92976 1.74143 1.96162 1.55271 0.92125 0.75443 0.88764 0.88445 0.94065 0.84959 0.84201 0.84766 0.74935 0.76429 0.88602 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.65 9.50 21.44 0.20 -48.45 16 2 C 0.02 0.82 5.20 84.65 0.44 1.26 16 3 Si 0.98 40.64 29.54 68.60 2.03 42.67 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.56 -28.56 8.46 25.60 0.22 -28.34 16 8 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 9 C 0.27 13.86 2.20 44.25 0.10 13.95 16 10 H 0.04 2.62 7.65 -2.38 -0.02 2.61 16 11 N -0.72 -30.18 4.90 -461.41 -2.26 -32.44 16 12 C 0.70 28.80 7.92 179.05 1.42 30.22 16 13 O -0.62 -30.64 14.20 -3.98 -0.06 -30.70 16 14 N -0.63 -19.35 3.02 -835.05 -2.52 -21.87 16 15 C 0.07 1.68 6.64 86.33 0.57 2.26 16 16 C 0.05 1.19 6.98 72.08 0.50 1.69 16 17 O -0.37 -9.10 9.62 -135.23 -1.30 -10.40 16 18 C 0.10 2.18 2.32 30.70 0.07 2.25 16 19 H 0.04 1.20 7.96 -2.39 -0.02 1.18 16 20 C -0.13 -1.77 5.42 29.85 0.16 -1.61 16 21 C 0.51 9.43 7.98 87.66 0.70 10.13 16 22 N -0.84 -7.46 8.87 -173.53 -1.54 -9.00 16 23 O -0.59 -17.59 16.26 10.71 0.17 -17.42 16 24 C 0.10 2.55 5.91 86.35 0.51 3.06 16 25 C 0.41 21.78 2.81 71.98 0.20 21.98 16 26 F -0.22 -11.50 15.48 44.97 0.70 -10.80 16 27 F -0.15 -8.61 12.91 44.97 0.58 -8.03 16 28 F -0.20 -10.09 16.94 44.97 0.76 -9.33 16 29 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 30 H 0.41 14.43 6.05 -92.71 -0.56 13.87 16 31 H 0.09 2.07 5.67 -2.39 -0.01 2.05 16 32 H 0.10 1.84 8.14 -2.38 -0.02 1.83 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.42 0.58 8.83 -92.70 -0.82 -0.24 16 38 H 0.40 3.31 8.93 -92.71 -0.83 2.48 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 2.48 7.12 -2.39 -0.02 2.46 16 Total: -1.00 -79.05 341.52 0.59 -78.46 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -1.06 Total: 20.46 kcal Atomic # 6 Polarization: 51.96 SS G_CDS: 4.89 Total: 56.86 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -6.12 Total: -111.76 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -1.18 Total: -58.52 kcal Atomic # 9 Polarization: -30.20 SS G_CDS: 2.04 Total: -28.16 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -79.05 0.59 -78.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.872 kcal (2) G-P(sol) polarization free energy of solvation -79.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds