Wall clock time and date at job start Tue Mar 31 2020 22:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00118 * 2 1 4 4 H 1.48496 * 109.46805 * 269.99883 * 3 2 1 5 5 H 1.48493 * 109.46853 * 30.00082 * 3 2 1 6 6 H 1.48500 * 109.46868 * 150.00118 * 3 2 1 7 7 C 1.37886 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99522 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47519 * 300.00427 * 9 7 2 11 11 N 1.46502 * 109.46744 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99970 * 155.00697 * 11 9 7 13 13 O 1.21587 * 120.00192 * 4.98150 * 12 11 9 14 14 N 1.34779 * 120.00129 * 184.98765 * 12 11 9 15 15 C 1.47150 * 120.98173 * 175.00762 * 14 12 11 16 16 C 1.53292 * 108.38357 * 230.55805 * 15 14 12 17 17 O 1.42964 * 109.22269 * 307.69476 * 16 15 14 18 18 C 1.42967 * 114.16132 * 62.58420 * 17 16 15 19 19 H 1.09002 * 109.51301 * 57.34667 * 18 17 16 20 20 C 1.53000 * 109.50825 * 177.44468 * 18 17 16 21 21 C 1.50704 * 109.47488 * 294.89631 * 20 18 17 22 22 N 1.34771 * 120.00363 * 180.02562 * 21 20 18 23 23 O 1.21290 * 119.99576 * 0.02562 * 21 20 18 24 24 C 1.47149 * 120.98196 * 355.03149 * 14 12 11 25 25 C 1.53000 * 109.47005 * 60.00717 * 9 7 2 26 26 F 1.39909 * 109.47077 * 179.97438 * 25 9 7 27 27 F 1.39906 * 109.47172 * 299.99338 * 25 9 7 28 28 F 1.39900 * 109.47339 * 59.99695 * 25 9 7 29 29 H 0.97004 * 119.99888 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00214 * 334.99883 * 11 9 7 31 31 H 1.08994 * 109.67916 * 110.83156 * 15 14 12 32 32 H 1.09004 * 109.71574 * 350.30091 * 15 14 12 33 33 H 1.09011 * 109.51281 * 187.77786 * 16 15 14 34 34 H 1.08999 * 109.55768 * 67.65057 * 16 15 14 35 35 H 1.08998 * 109.47455 * 54.89870 * 20 18 17 36 36 H 1.09001 * 109.46709 * 174.90179 * 20 18 17 37 37 H 0.96999 * 119.99899 * 359.97438 * 22 21 20 38 38 H 0.97006 * 119.99905 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.67802 * 9.72023 * 24 14 12 40 40 H 1.08999 * 109.68119 * 249.16683 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8124 0.4926 13 8 0.6906 -4.9970 0.8538 14 7 2.7412 -5.8073 0.5856 15 6 2.3947 -7.0891 1.2199 16 6 3.4732 -7.4223 2.2571 17 8 4.7600 -7.3473 1.6388 18 6 5.0995 -6.0474 1.1500 19 1 5.0539 -5.3277 1.9673 20 6 6.5151 -6.0732 0.5701 21 6 7.5044 -6.3528 1.6721 22 7 8.8213 -6.4216 1.3941 23 8 7.1153 -6.5158 2.8093 24 6 4.1043 -5.6438 0.0561 25 6 0.3710 -2.5799 -1.2495 26 9 -0.3282 -3.7917 -1.2499 27 9 -0.5382 -1.5165 -1.2490 28 9 1.1750 -2.5056 -2.3921 29 1 -0.4850 0.8401 0.0004 30 1 3.0968 -3.4866 -0.3555 31 1 2.3567 -7.8740 0.4646 32 1 1.4255 -7.0058 1.7118 33 1 3.3113 -8.4302 2.6397 34 1 3.4219 -6.7083 3.0790 35 1 6.5837 -6.8548 -0.1865 36 1 6.7396 -5.1078 0.1167 37 1 9.1324 -6.2916 0.4846 38 1 9.4580 -6.6019 2.1034 39 1 4.2674 -4.6027 -0.2225 40 1 4.2385 -6.2832 -0.8163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413645197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:53 Heat of formation + Delta-G solvation = -236.056808 kcal Electronic energy + Delta-G solvation = -31414.522853 eV Core-core repulsion = 26429.687041 eV Total energy + Delta-G solvation = -4984.835812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.30768 -45.95671 -45.58169 -40.41249 -39.46869 -38.10790 -34.83982 -34.43785 -33.88916 -33.05289 -32.44685 -29.44023 -28.01868 -26.67184 -24.57523 -23.57186 -22.24253 -21.11384 -20.55814 -19.46977 -18.43529 -17.54394 -17.08222 -16.87633 -16.78256 -16.69487 -16.58068 -15.91263 -15.50109 -15.22301 -15.02203 -14.80818 -14.73077 -14.40367 -13.96914 -13.47291 -13.29410 -13.07285 -12.83815 -12.62442 -12.42064 -12.35577 -12.33026 -12.19373 -12.00515 -11.82560 -11.66359 -11.35227 -11.17458 -10.90503 -10.81386 -10.70325 -10.40109 -10.14412 -10.04549 -9.90090 -9.66734 -9.53272 -8.74438 -8.48431 -8.10502 -6.24620 -4.48968 2.48472 2.86882 3.17299 3.23445 3.25642 3.27750 3.60959 3.68744 4.14777 4.33003 4.50430 4.57990 4.62932 4.90650 4.92490 4.92821 5.07092 5.12881 5.19937 5.37610 5.41055 5.49837 5.76259 5.78844 5.87344 5.90192 5.98424 6.22651 6.52679 6.55388 6.83750 7.04532 7.13035 7.17190 7.31472 7.56537 7.62634 8.07276 8.45876 8.54935 9.09552 9.21326 10.66880 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.003731 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.683697 B = 7503.833568 C = 8861.048722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.066 3.934 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.262 3.738 10 H 0.084 0.916 11 N -0.725 5.725 12 C 0.704 3.296 13 O -0.577 6.577 14 N -0.637 5.637 15 C 0.097 3.903 16 C 0.052 3.948 17 O -0.368 6.368 18 C 0.093 3.907 19 H 0.074 0.926 20 C -0.137 4.137 21 C 0.519 3.481 22 N -0.862 5.862 23 O -0.529 6.529 24 C 0.084 3.916 25 C 0.416 3.584 26 F -0.215 7.215 27 F -0.138 7.138 28 F -0.211 7.211 29 H 0.268 0.732 30 H 0.392 0.608 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.400 0.600 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.708 -11.242 -1.204 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.156 3.844 10 H 0.101 0.899 11 N -0.380 5.380 12 C 0.406 3.594 13 O -0.454 6.454 14 N -0.377 5.377 15 C -0.026 4.026 16 C -0.025 4.025 17 O -0.287 6.287 18 C 0.034 3.966 19 H 0.092 0.908 20 C -0.177 4.177 21 C 0.304 3.696 22 N -0.426 5.426 23 O -0.403 6.403 24 C -0.040 4.040 25 C 0.359 3.641 26 F -0.197 7.197 27 F -0.119 7.119 28 F -0.193 7.193 29 H 0.079 0.921 30 H 0.228 0.772 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.228 0.772 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.269 -11.441 -0.276 17.522 hybrid contribution 1.005 1.084 -0.778 1.670 sum 14.274 -10.357 -1.054 17.667 Atomic orbital electron populations 1.70406 1.05849 1.27375 1.43524 1.25074 0.95147 1.00062 0.94060 0.86214 0.79533 0.81690 0.78398 1.20219 1.20779 1.19527 1.20847 0.93696 0.88071 1.56321 0.90581 1.19619 0.88214 0.84905 0.91651 0.89853 1.45423 1.17370 1.09639 1.65558 1.15947 0.84222 0.80334 0.78944 1.90920 1.17243 1.81461 1.55733 1.47219 1.11434 1.14932 1.64121 1.22100 1.00048 0.84363 0.96131 1.22976 0.82410 1.02642 0.94518 1.87930 1.34547 1.28931 1.77251 1.22118 0.91651 0.86973 0.95907 0.90782 1.21694 0.92737 1.05214 0.98064 1.20499 0.83202 0.75752 0.90174 1.43896 1.08028 1.76563 1.14111 1.90787 1.78815 1.48177 1.22563 1.22269 0.82473 1.02659 0.96630 1.23146 0.80940 0.72866 0.87106 1.93085 1.81422 1.48200 1.96951 1.93401 1.68431 1.53855 1.96200 1.92977 1.74499 1.96206 1.55610 0.92094 0.77197 0.91336 0.87962 0.87866 0.92498 0.87596 0.86893 0.77169 0.76977 0.89150 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.87 9.50 55.43 0.53 -22.34 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.55 -13.89 8.46 -34.44 -0.29 -14.18 16 8 H 0.08 1.79 7.74 -52.49 -0.41 1.38 16 9 C 0.26 6.52 2.20 -69.08 -0.15 6.37 16 10 H 0.08 2.33 7.65 -51.93 -0.40 1.94 16 11 N -0.73 -14.94 4.90 -59.81 -0.29 -15.24 16 12 C 0.70 14.39 7.92 -86.91 -0.69 13.70 16 13 O -0.58 -14.00 14.20 5.29 0.08 -13.92 16 14 N -0.64 -10.00 3.02 -178.01 -0.54 -10.54 16 15 C 0.10 1.32 6.62 -3.54 -0.02 1.30 16 16 C 0.05 0.63 6.98 37.31 0.26 0.90 16 17 O -0.37 -4.77 9.63 -49.51 -0.48 -5.24 16 18 C 0.09 1.07 2.32 -26.58 -0.06 1.00 16 19 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 20 C -0.14 -1.06 5.42 -27.88 -0.15 -1.21 16 21 C 0.52 5.13 7.98 -10.99 -0.09 5.04 16 22 N -0.86 -4.87 8.87 31.22 0.28 -4.59 16 23 O -0.53 -7.90 16.26 -8.73 -0.14 -8.04 16 24 C 0.08 0.99 5.92 -3.54 -0.02 0.97 16 25 C 0.42 10.74 2.81 37.16 0.10 10.84 16 26 F -0.21 -5.59 15.48 2.25 0.03 -5.55 16 27 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 28 F -0.21 -5.20 16.94 2.25 0.04 -5.16 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.89 6.05 -40.82 -0.25 6.65 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.52 7.12 -51.93 -0.37 1.15 16 33 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.40 0.94 8.83 -40.82 -0.36 0.58 16 38 H 0.40 2.05 8.93 -40.82 -0.36 1.69 16 39 H 0.09 1.00 5.66 -51.93 -0.29 0.70 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -35.36 341.51 -6.07 -41.43 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.52 Total: 6.74 kcal Atomic # 6 Polarization: 27.53 SS G_CDS: -1.20 Total: 26.33 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.03 Total: -52.71 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.54 Total: -27.21 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 0.10 Total: -14.51 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.36 -6.07 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.630 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds