Wall clock time and date at job start Tue Mar 31 2020 22:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00118 * 2 1 4 4 H 1.48496 * 109.46805 * 269.99883 * 3 2 1 5 5 H 1.48493 * 109.46853 * 30.00082 * 3 2 1 6 6 H 1.48500 * 109.46868 * 150.00118 * 3 2 1 7 7 C 1.37886 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99522 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47519 * 300.00427 * 9 7 2 11 11 N 1.46502 * 109.46744 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99970 * 155.00697 * 11 9 7 13 13 O 1.21587 * 120.00192 * 4.98150 * 12 11 9 14 14 N 1.34779 * 120.00129 * 184.98765 * 12 11 9 15 15 C 1.47150 * 120.98173 * 175.00762 * 14 12 11 16 16 C 1.53292 * 108.38357 * 230.55805 * 15 14 12 17 17 O 1.42964 * 109.22269 * 307.69476 * 16 15 14 18 18 C 1.42967 * 114.16132 * 62.58420 * 17 16 15 19 19 H 1.09002 * 109.51301 * 57.34667 * 18 17 16 20 20 C 1.53000 * 109.50825 * 177.44468 * 18 17 16 21 21 C 1.50704 * 109.47488 * 294.89631 * 20 18 17 22 22 N 1.34771 * 120.00363 * 180.02562 * 21 20 18 23 23 O 1.21290 * 119.99576 * 0.02562 * 21 20 18 24 24 C 1.47149 * 120.98196 * 355.03149 * 14 12 11 25 25 C 1.53000 * 109.47005 * 60.00717 * 9 7 2 26 26 F 1.39909 * 109.47077 * 179.97438 * 25 9 7 27 27 F 1.39906 * 109.47172 * 299.99338 * 25 9 7 28 28 F 1.39900 * 109.47339 * 59.99695 * 25 9 7 29 29 H 0.97004 * 119.99888 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00214 * 334.99883 * 11 9 7 31 31 H 1.08994 * 109.67916 * 110.83156 * 15 14 12 32 32 H 1.09004 * 109.71574 * 350.30091 * 15 14 12 33 33 H 1.09011 * 109.51281 * 187.77786 * 16 15 14 34 34 H 1.08999 * 109.55768 * 67.65057 * 16 15 14 35 35 H 1.08998 * 109.47455 * 54.89870 * 20 18 17 36 36 H 1.09001 * 109.46709 * 174.90179 * 20 18 17 37 37 H 0.96999 * 119.99899 * 359.97438 * 22 21 20 38 38 H 0.97006 * 119.99905 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.67802 * 9.72023 * 24 14 12 40 40 H 1.08999 * 109.68119 * 249.16683 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8124 0.4926 13 8 0.6906 -4.9970 0.8538 14 7 2.7412 -5.8073 0.5856 15 6 2.3947 -7.0891 1.2199 16 6 3.4732 -7.4223 2.2571 17 8 4.7600 -7.3473 1.6388 18 6 5.0995 -6.0474 1.1500 19 1 5.0539 -5.3277 1.9673 20 6 6.5151 -6.0732 0.5701 21 6 7.5044 -6.3528 1.6721 22 7 8.8213 -6.4216 1.3941 23 8 7.1153 -6.5158 2.8093 24 6 4.1043 -5.6438 0.0561 25 6 0.3710 -2.5799 -1.2495 26 9 -0.3282 -3.7917 -1.2499 27 9 -0.5382 -1.5165 -1.2490 28 9 1.1750 -2.5056 -2.3921 29 1 -0.4850 0.8401 0.0004 30 1 3.0968 -3.4866 -0.3555 31 1 2.3567 -7.8740 0.4646 32 1 1.4255 -7.0058 1.7118 33 1 3.3113 -8.4302 2.6397 34 1 3.4219 -6.7083 3.0790 35 1 6.5837 -6.8548 -0.1865 36 1 6.7396 -5.1078 0.1167 37 1 9.1324 -6.2916 0.4846 38 1 9.4580 -6.6019 2.1034 39 1 4.2674 -4.6027 -0.2225 40 1 4.2385 -6.2832 -0.8163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413645197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:52 Heat of formation + Delta-G solvation = -264.371578 kcal Electronic energy + Delta-G solvation = -31415.750673 eV Core-core repulsion = 26429.687041 eV Total energy + Delta-G solvation = -4986.063632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.38364 -48.01357 -47.70090 -41.61921 -40.47634 -39.28146 -36.60639 -35.76685 -34.61696 -34.47094 -33.73811 -30.83092 -29.40496 -27.78775 -26.57270 -24.69498 -23.61540 -22.68738 -21.29845 -21.00858 -19.83108 -18.90116 -18.77377 -18.60047 -18.21891 -17.86489 -17.61761 -17.51837 -17.05401 -16.60192 -16.40993 -15.98757 -15.63866 -15.53125 -15.31512 -15.03757 -14.93387 -14.56545 -14.43166 -14.41660 -14.28498 -14.20951 -14.01263 -13.88997 -13.38423 -13.03899 -12.97343 -12.76367 -12.70865 -12.63581 -12.27189 -12.17972 -11.77310 -11.55570 -11.27253 -11.07668 -10.91754 -10.68277 -10.53782 -10.17056 -9.45538 -8.19884 -6.51236 1.45740 1.49089 1.52613 1.61591 1.78245 2.05685 2.36877 2.56170 2.63733 2.74296 2.93231 2.96529 3.68596 3.78337 3.80802 3.88343 3.94671 4.07611 4.14205 4.18164 4.27689 4.42777 4.54605 4.60279 4.67876 4.78011 4.85505 4.89258 5.02337 5.39095 5.41458 5.55452 5.65549 5.92350 6.00152 6.15189 6.53544 6.58665 6.98242 7.19183 7.48408 7.55732 8.72919 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.003731 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.683697 B = 7503.833568 C = 8861.048722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.271 3.729 10 H 0.043 0.957 11 N -0.718 5.718 12 C 0.698 3.302 13 O -0.623 6.623 14 N -0.632 5.632 15 C 0.096 3.904 16 C 0.059 3.941 17 O -0.375 6.375 18 C 0.092 3.908 19 H 0.046 0.954 20 C -0.130 4.130 21 C 0.513 3.487 22 N -0.840 5.840 23 O -0.590 6.590 24 C 0.081 3.919 25 C 0.413 3.587 26 F -0.218 7.218 27 F -0.151 7.151 28 F -0.203 7.203 29 H 0.268 0.732 30 H 0.408 0.592 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.038 0.962 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.419 0.581 38 H 0.404 0.596 39 H 0.099 0.901 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.757 -11.447 -2.653 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.596 4.596 8 H 0.112 0.888 9 C 0.163 3.837 10 H 0.061 0.939 11 N -0.374 5.374 12 C 0.400 3.600 13 O -0.504 6.504 14 N -0.370 5.370 15 C -0.027 4.027 16 C -0.019 4.019 17 O -0.293 6.293 18 C 0.033 3.967 19 H 0.064 0.936 20 C -0.170 4.170 21 C 0.298 3.702 22 N -0.405 5.405 23 O -0.470 6.470 24 C -0.042 4.042 25 C 0.356 3.644 26 F -0.200 7.200 27 F -0.132 7.132 28 F -0.184 7.184 29 H 0.078 0.922 30 H 0.247 0.753 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.056 0.944 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.117 0.883 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.438 -11.688 -1.776 20.248 hybrid contribution 0.105 1.060 -0.340 1.118 sum 16.544 -10.628 -2.116 19.777 Atomic orbital electron populations 1.70543 1.07570 1.28162 1.44636 1.26009 0.95872 1.03698 0.93444 0.85143 0.78574 0.77015 0.78495 1.19758 1.21046 1.17969 1.21197 0.94551 0.88067 1.55822 0.88800 1.19201 0.88363 0.86572 0.89593 0.93938 1.45130 1.17375 1.08934 1.65960 1.16138 0.84352 0.80919 0.78625 1.90884 1.19600 1.82330 1.57547 1.47283 1.12243 1.14243 1.63281 1.22256 0.99729 0.83813 0.96910 1.22959 0.81934 1.03587 0.93388 1.87936 1.34456 1.29729 1.77210 1.22174 0.93827 0.85775 0.94925 0.93634 1.21763 0.89491 1.08099 0.97608 1.20906 0.84542 0.74974 0.89729 1.43733 1.06799 1.74520 1.15417 1.90771 1.79972 1.51333 1.24955 1.22580 0.80046 1.04015 0.97526 1.23319 0.80902 0.72362 0.87779 1.93074 1.81599 1.48352 1.97007 1.93375 1.69013 1.54544 1.96317 1.92977 1.74142 1.96156 1.55170 0.92182 0.75319 0.89216 0.89870 0.85270 0.94390 0.84745 0.83563 0.74918 0.76526 0.88251 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.43 9.50 21.45 0.20 -48.23 16 2 C 0.02 0.77 5.20 84.66 0.44 1.21 16 3 Si 0.98 39.81 29.54 68.60 2.03 41.84 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.56 -27.84 8.46 25.60 0.22 -27.62 16 8 H 0.09 4.23 7.74 -2.91 -0.02 4.21 16 9 C 0.27 13.66 2.20 44.24 0.10 13.76 16 10 H 0.04 2.50 7.65 -2.39 -0.02 2.49 16 11 N -0.72 -29.40 4.90 -461.41 -2.26 -31.66 16 12 C 0.70 28.77 7.92 179.05 1.42 30.19 16 13 O -0.62 -31.31 14.20 -3.99 -0.06 -31.36 16 14 N -0.63 -19.30 3.02 -835.37 -2.52 -21.83 16 15 C 0.10 2.55 6.62 86.35 0.57 3.12 16 16 C 0.06 1.39 6.98 72.08 0.50 1.90 16 17 O -0.37 -9.10 9.63 -135.33 -1.30 -10.40 16 18 C 0.09 1.94 2.32 30.69 0.07 2.01 16 19 H 0.05 1.22 7.96 -2.39 -0.02 1.20 16 20 C -0.13 -1.55 5.42 29.85 0.16 -1.39 16 21 C 0.51 9.02 7.98 87.66 0.70 9.72 16 22 N -0.84 -7.11 8.87 -173.53 -1.54 -8.65 16 23 O -0.59 -17.41 16.26 10.59 0.17 -17.24 16 24 C 0.08 1.70 5.92 86.35 0.51 2.21 16 25 C 0.41 21.59 2.81 71.98 0.20 21.79 16 26 F -0.22 -11.58 15.48 44.97 0.70 -10.89 16 27 F -0.15 -8.59 12.91 44.97 0.58 -8.01 16 28 F -0.20 -9.85 16.94 44.97 0.76 -9.09 16 29 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.41 13.70 6.05 -92.71 -0.56 13.14 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.55 7.12 -2.38 -0.02 2.53 16 33 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.42 0.36 8.83 -92.71 -0.82 -0.45 16 38 H 0.40 3.25 8.93 -92.70 -0.83 2.42 16 39 H 0.10 1.90 5.66 -2.38 -0.01 1.88 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.70 341.51 0.59 -79.11 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -1.06 Total: 19.51 kcal Atomic # 6 Polarization: 52.00 SS G_CDS: 4.89 Total: 56.89 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -6.12 Total: -110.37 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -1.19 Total: -59.00 kcal Atomic # 9 Polarization: -30.03 SS G_CDS: 2.04 Total: -27.99 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -79.70 0.59 -79.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413645197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.260 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds