Wall clock time and date at job start Tue Mar 31 2020 22:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47183 * 270.00309 * 3 2 1 5 5 H 1.48494 * 109.46903 * 30.00320 * 3 2 1 6 6 H 1.48497 * 109.46862 * 150.00109 * 3 2 1 7 7 C 1.37877 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00097 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00009 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.46903 * 111.00143 * 169.99874 * 10 9 7 12 12 C 1.53233 * 109.34257 * 187.25563 * 11 10 9 13 13 N 1.47074 * 108.52134 * 306.17250 * 12 11 10 14 14 C 1.34777 * 120.88452 * 231.16140 * 13 12 11 15 15 O 1.21567 * 120.00149 * 174.79991 * 14 13 12 16 16 N 1.34776 * 119.99540 * 354.79922 * 14 13 12 17 17 C 1.38368 * 120.00064 * 185.01308 * 16 14 13 18 18 N 1.30130 * 124.74114 * 0.02866 * 17 16 14 19 19 C 1.30872 * 117.29151 * 179.97438 * 18 17 16 20 20 C 1.36719 * 114.01713 * 359.97438 * 19 18 17 21 21 C 1.46320 * 126.11504 * 179.97438 * 20 19 18 22 22 N 1.34777 * 119.99581 * 180.02562 * 21 20 19 23 23 O 1.21736 * 120.00067 * 0.02562 * 21 20 19 24 24 S 1.70918 * 124.74454 * 179.72202 * 17 16 14 25 25 C 1.47084 * 118.24065 * 51.18525 * 13 12 11 26 26 C 1.46897 * 111.00164 * 294.30288 * 10 9 7 27 27 H 0.96998 * 120.00378 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47207 * 60.00058 * 9 7 2 29 29 H 1.09001 * 109.47588 * 300.00180 * 9 7 2 30 30 H 1.09007 * 109.49287 * 307.22082 * 11 10 9 31 31 H 1.09000 * 109.48871 * 67.29510 * 11 10 9 32 32 H 1.09001 * 109.62683 * 65.87949 * 12 11 10 33 33 H 1.08995 * 109.63330 * 186.45899 * 12 11 10 34 34 H 0.96994 * 120.00253 * 5.01444 * 16 14 13 35 35 H 1.08003 * 122.99420 * 180.02562 * 19 18 17 36 36 H 0.97003 * 119.99850 * 0.02562 * 22 21 20 37 37 H 0.96996 * 119.99835 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.63396 * 189.10799 * 25 13 12 39 39 H 1.08997 * 109.62750 * 68.51842 * 25 13 12 40 40 H 1.08998 * 109.49458 * 292.70383 * 26 10 9 41 41 H 1.08998 * 109.49315 * 52.75756 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4500 -2.6251 -0.2397 12 6 5.8897 -4.0828 -0.4124 13 7 5.4266 -4.8516 0.7527 14 6 6.2769 -5.6317 1.4492 15 8 5.9010 -6.1856 2.4640 16 7 7.5438 -5.7977 1.0205 17 6 8.3860 -6.6788 1.6755 18 7 8.0522 -7.3925 2.7112 19 6 8.9665 -8.1809 3.2165 20 6 10.1655 -8.1340 2.5614 21 6 11.3642 -8.9016 2.9005 22 7 12.4859 -8.7584 2.1672 23 8 11.3482 -9.6696 3.8449 24 16 10.0077 -6.9875 1.2328 25 6 4.0109 -4.7471 1.1374 26 6 3.6451 -3.2632 1.2491 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 5.6878 -2.0639 -1.1435 31 1 5.9728 -2.1857 0.6098 32 1 5.4485 -4.4932 -1.3207 33 1 6.9768 -4.1324 -0.4753 34 1 7.8653 -5.2996 0.2529 35 1 8.7893 -8.8129 4.0742 36 1 12.4987 -8.1461 1.4150 37 1 13.2806 -9.2670 2.3922 38 1 3.8557 -5.2358 2.0993 39 1 3.3891 -5.2213 0.3780 40 1 4.1930 -2.8149 2.0780 41 1 2.5741 -3.1644 1.4255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413670022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:10 Heat of formation + Delta-G solvation = 20.067731 kcal Electronic energy + Delta-G solvation = -26239.944056 eV Core-core repulsion = 22283.117000 eV Total energy + Delta-G solvation = -3956.827056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16135 -40.11942 -39.15296 -37.85758 -35.36357 -34.64826 -34.15443 -32.45240 -31.04755 -30.10763 -28.84279 -26.44632 -25.47543 -23.67190 -23.21300 -22.12975 -21.25981 -20.40242 -19.84061 -19.13811 -18.16565 -17.80073 -16.91443 -16.57464 -16.36238 -16.25813 -15.61236 -15.31214 -14.89868 -14.74720 -14.66025 -14.51774 -14.35096 -14.07627 -13.94491 -13.60920 -13.19713 -12.59294 -12.35977 -12.06811 -11.73514 -11.45771 -11.21524 -11.05943 -10.93126 -10.85377 -10.63463 -10.56940 -10.37304 -10.23229 -10.00066 -9.87541 -9.72570 -9.41268 -8.85055 -8.66215 -8.53295 -7.59108 -6.14095 -4.12716 -0.11379 0.32293 1.03154 2.10353 2.14287 2.81358 3.03004 3.05979 3.20785 3.26717 3.29292 3.29533 4.13693 4.33006 4.41070 4.55214 4.86270 4.87116 5.03004 5.14337 5.20179 5.37344 5.45545 5.59587 5.66907 5.78451 5.81464 5.90881 6.12089 6.24092 6.25885 6.38227 6.54334 6.72875 6.75038 6.82933 7.23766 7.43813 7.54958 7.70051 7.73830 7.84412 8.23077 8.52717 8.93191 9.46658 10.98646 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034414 B = 0.002037 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.431843 B =13739.434102 C =14139.787977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.525 5.525 11 C 0.037 3.963 12 C 0.115 3.885 13 N -0.616 5.616 14 C 0.699 3.301 15 O -0.523 6.523 16 N -0.640 5.640 17 C 0.322 3.678 18 N -0.482 5.482 19 C 0.174 3.826 20 C -0.340 4.340 21 C 0.612 3.388 22 N -0.852 5.852 23 O -0.533 6.533 24 S 0.152 5.848 25 C 0.133 3.867 26 C 0.049 3.951 27 H 0.265 0.735 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.419 0.581 35 H 0.193 0.807 36 H 0.398 0.602 37 H 0.408 0.592 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.027 -13.117 -2.072 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.552 4.552 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.093 4.093 12 C -0.009 4.009 13 N -0.354 5.354 14 C 0.398 3.602 15 O -0.393 6.393 16 N -0.295 5.295 17 C -0.045 4.045 18 N -0.202 5.202 19 C 0.014 3.986 20 C -0.466 4.466 21 C 0.396 3.604 22 N -0.415 5.415 23 O -0.411 6.411 24 S 0.403 5.597 25 C 0.011 3.989 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.007 0.993 29 H 0.044 0.956 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.260 0.740 35 H 0.210 0.790 36 H 0.227 0.773 37 H 0.240 0.760 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 24.121 -13.548 -1.744 27.720 hybrid contribution 1.134 1.486 0.467 1.927 sum 25.254 -12.062 -1.277 28.016 Atomic orbital electron populations 1.69880 1.06114 1.26974 1.50548 1.24899 0.94741 0.98866 0.94736 0.86870 0.80255 0.84086 0.78559 1.20118 1.21139 1.19389 1.20987 0.88513 0.94807 1.50883 0.89979 1.20182 0.97299 0.83581 0.95218 1.61911 1.09440 1.19445 1.34208 1.22433 0.91251 0.94465 1.01117 1.21854 0.97421 0.92604 0.89012 1.47526 1.10340 1.46545 1.31022 1.15850 0.79670 0.81039 0.83683 1.91064 1.74733 1.50293 1.23213 1.42478 1.11319 1.42359 1.33304 1.23720 0.92818 0.94309 0.93676 1.66479 1.33339 1.10065 1.10335 1.22463 0.84925 0.93308 0.97882 1.25483 1.01683 1.12838 1.06601 1.16526 0.81593 0.80525 0.81732 1.43692 1.14624 1.48407 1.34824 1.90908 1.83699 1.37668 1.28819 1.83601 1.07202 1.38790 1.30122 1.21881 0.77440 0.97680 1.01940 1.22430 1.03305 0.91761 0.90514 0.92540 0.99292 0.95599 0.89740 0.95290 0.89740 0.91537 0.74003 0.78983 0.77334 0.75995 0.88754 0.90357 0.95458 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.51 -13.74 8.96 -34.44 -0.31 -14.04 16 8 H 0.08 2.38 7.37 -52.49 -0.39 2.00 16 9 C 0.16 3.65 3.79 -4.98 -0.02 3.63 16 10 N -0.53 -9.71 4.62 -235.76 -1.09 -10.80 16 11 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 12 C 0.11 1.21 6.54 -3.61 -0.02 1.18 16 13 N -0.62 -8.14 3.01 -178.20 -0.54 -8.68 16 14 C 0.70 9.80 8.26 -86.92 -0.72 9.08 16 15 O -0.52 -9.46 14.41 5.31 0.08 -9.38 16 16 N -0.64 -6.51 5.29 -17.55 -0.09 -6.60 16 17 C 0.32 3.46 7.98 -87.55 -0.70 2.77 16 18 N -0.48 -6.48 8.57 -14.65 -0.13 -6.60 16 19 C 0.17 1.96 11.15 -18.51 -0.21 1.75 16 20 C -0.34 -3.13 6.50 -36.88 -0.24 -3.37 16 21 C 0.61 5.65 8.05 -13.01 -0.10 5.55 16 22 N -0.85 -4.19 8.87 30.18 0.27 -3.93 16 23 O -0.53 -6.93 17.70 5.16 0.09 -6.84 16 24 S 0.15 1.00 22.33 -107.50 -2.40 -1.40 16 25 C 0.13 1.98 6.61 -3.60 -0.02 1.96 16 26 C 0.05 0.86 5.46 -3.70 -0.02 0.84 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H -0.01 -0.25 7.18 -51.93 -0.37 -0.62 16 29 H 0.03 0.57 7.40 -51.93 -0.38 0.19 16 30 H 0.08 1.06 7.99 -51.93 -0.41 0.65 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.44 5.74 -51.93 -0.30 0.14 16 34 H 0.42 2.67 6.36 -40.82 -0.26 2.41 16 35 H 0.19 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.40 1.04 8.00 -40.82 -0.33 0.71 16 37 H 0.41 1.40 8.93 -40.82 -0.36 1.04 16 38 H 0.09 1.45 7.04 -51.93 -0.37 1.09 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.11 2.10 6.67 -51.93 -0.35 1.75 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -36.31 352.98 -9.67 -45.98 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.80 Total: 1.10 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -2.48 Total: 11.66 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.80 Total: -62.34 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.17 Total: -16.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.40 Total: -1.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.31 -9.67 -45.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413670022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.045 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds