Wall clock time and date at job start Tue Mar 31 2020 22:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00282 * 2 1 4 4 O 1.20821 * 119.99971 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99748 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46911 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47064 * 180.02562 * 6 5 3 8 8 C 1.37090 * 119.99756 * 263.62162 * 7 6 5 9 9 H 1.07995 * 120.00313 * 142.25173 * 8 7 6 10 10 C 1.38954 * 120.00117 * 322.24772 * 8 7 6 11 11 N 1.31409 * 120.00149 * 157.64476 * 10 8 7 12 12 Si 1.86797 * 119.99850 * 337.64419 * 10 8 7 13 13 H 1.48499 * 109.47387 * 95.70082 * 12 10 8 14 14 H 1.48508 * 109.47303 * 215.70087 * 12 10 8 15 15 H 1.48505 * 109.47505 * 335.70169 * 12 10 8 16 16 C 1.34775 * 119.99984 * 83.61739 * 7 6 5 17 17 O 1.21295 * 119.99925 * 0.02562 * 16 7 6 18 18 C 1.50702 * 119.99794 * 180.02562 * 16 7 6 19 19 C 1.50697 * 109.46852 * 180.02562 * 18 16 7 20 20 C 1.38234 * 120.76434 * 269.97332 * 19 18 16 21 21 C 1.50697 * 120.37296 * 0.04547 * 20 19 18 22 22 N 1.32454 * 119.24677 * 180.02562 * 20 19 18 23 23 C 1.32323 * 120.90129 * 0.02562 * 22 20 19 24 24 O 1.35462 * 119.16183 * 180.02562 * 23 22 20 25 25 N 1.32280 * 121.67076 * 359.71458 * 23 22 20 26 26 C 1.32775 * 120.66337 * 0.57377 * 25 23 22 27 27 O 1.35516 * 120.47948 * 179.71554 * 26 25 23 28 28 H 1.08997 * 109.47765 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46316 * 300.00082 * 1 2 3 30 30 H 1.08998 * 109.46764 * 59.99666 * 1 2 3 31 31 H 1.08998 * 109.47038 * 60.00339 * 5 3 2 32 32 H 1.09001 * 109.47450 * 300.00140 * 5 3 2 33 33 H 1.08998 * 109.47192 * 60.00189 * 6 5 3 34 34 H 1.09004 * 109.46924 * 299.99416 * 6 5 3 35 35 H 0.97008 * 120.00068 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47069 * 59.99894 * 18 16 7 37 37 H 1.09003 * 109.47198 * 299.99825 * 18 16 7 38 38 H 1.09005 * 109.46539 * 90.00437 * 21 20 19 39 39 H 1.09006 * 109.46719 * 209.99819 * 21 20 19 40 40 H 1.08993 * 109.47711 * 329.99926 * 21 20 19 41 41 H 0.96697 * 113.99855 * 89.99893 * 24 23 22 42 42 H 0.96695 * 114.00081 * 269.72482 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2746 -0.0006 6 6 4.0003 2.7419 0.0002 7 7 5.4634 2.8184 -0.0010 8 6 6.1419 2.9851 1.1785 9 1 7.0804 2.4752 1.3382 10 6 5.6223 3.8101 2.1685 11 7 5.9933 3.6501 3.4189 12 14 4.3962 5.1467 1.7218 13 1 3.0155 4.6428 1.9334 14 1 4.6260 6.3364 2.5805 15 1 4.5723 5.5239 0.2963 16 6 6.1421 2.7250 -1.1616 17 8 5.5416 2.5779 -2.2052 18 6 7.6471 2.8032 -1.1627 19 6 8.1557 2.6736 -2.5753 20 6 8.4563 1.4337 -3.1077 21 6 8.2785 0.1862 -2.2811 22 7 8.9018 1.3547 -4.3525 23 6 9.0619 2.4434 -5.0874 24 8 9.5193 2.3217 -6.3566 25 7 8.7807 3.6470 -4.6161 26 6 8.3355 3.8011 -3.3748 27 8 8.0541 5.0365 -2.8939 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7803 0.8891 33 1 3.6110 3.2354 0.8906 34 1 3.6103 3.2365 -0.8894 35 1 5.6302 4.2258 4.1100 36 1 8.0533 1.9952 -0.5543 37 1 7.9614 3.7620 -0.7503 38 1 7.2700 -0.2025 -2.4224 39 1 9.0043 -0.5640 -2.5951 40 1 8.4327 0.4227 -1.2284 41 1 8.8218 2.2112 -7.0172 42 1 8.8026 5.4703 -2.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454934600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:51 Heat of formation + Delta-G solvation = -134.399394 kcal Electronic energy + Delta-G solvation = -30176.475060 eV Core-core repulsion = 25737.904185 eV Total energy + Delta-G solvation = -4438.570875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32114 -40.27138 -39.03269 -38.05821 -36.97733 -36.39130 -35.24845 -34.00155 -32.62697 -32.26865 -31.06025 -29.12676 -27.81948 -26.93008 -25.00994 -24.21198 -22.96210 -22.42153 -20.56843 -19.32566 -19.11337 -18.47758 -17.88697 -17.65832 -16.93932 -16.56059 -16.43013 -16.13739 -15.70525 -15.31476 -15.21772 -14.50853 -14.08353 -13.97265 -13.83904 -13.61363 -13.49216 -13.13115 -12.76639 -12.66627 -12.60443 -12.41270 -12.36980 -12.31429 -12.00920 -11.82196 -11.61145 -11.35222 -11.06029 -10.91922 -10.70013 -10.67540 -10.28667 -10.24823 -10.23302 -10.00610 -9.42591 -9.17583 -9.07519 -8.64479 -8.02972 -6.64911 -4.27332 0.83870 1.03561 2.45868 2.85199 2.94847 3.03072 3.19218 3.28444 3.42786 3.55544 3.80206 4.02975 4.26157 4.37797 4.77793 4.87735 4.96093 5.07561 5.13117 5.16455 5.19470 5.37286 5.45181 5.47160 5.56984 5.59535 5.69159 5.84652 5.92724 5.96192 6.01198 6.19099 6.25187 6.37532 6.45874 6.58637 6.84764 7.14562 7.40423 7.47385 7.87281 7.96029 8.04757 8.05966 8.77160 9.14546 9.47724 10.44332 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003980 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.136619 B = 7033.427521 C = 8482.282670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.122 4.122 6 C 0.117 3.883 7 N -0.460 5.460 8 C -0.357 4.357 9 H 0.109 0.891 10 C 0.075 3.925 11 N -0.851 5.851 12 Si 0.863 3.137 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.258 1.258 16 C 0.489 3.511 17 O -0.590 6.590 18 C -0.072 4.072 19 C -0.174 4.174 20 C 0.216 3.784 21 C -0.110 4.110 22 N -0.531 5.531 23 C 0.505 3.495 24 O -0.460 6.460 25 N -0.554 5.554 26 C 0.392 3.608 27 O -0.464 6.464 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.277 0.723 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.409 0.591 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 -5.911 -6.575 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.161 4.161 6 C -0.007 4.007 7 N -0.180 5.180 8 C -0.484 4.484 9 H 0.126 0.874 10 C -0.134 4.134 11 N -0.484 5.484 12 Si 0.690 3.310 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.182 1.182 16 C 0.278 3.722 17 O -0.474 6.474 18 C -0.112 4.112 19 C -0.181 4.181 20 C 0.071 3.929 21 C -0.167 4.167 22 N -0.259 5.259 23 C 0.200 3.800 24 O -0.263 6.263 25 N -0.291 5.291 26 C 0.205 3.795 27 O -0.271 6.271 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.268 0.732 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.833 -5.705 -7.801 9.700 hybrid contribution -1.207 1.192 0.687 1.830 sum -0.374 -4.513 -7.114 8.433 Atomic orbital electron populations 1.23206 0.77044 1.03266 1.02411 1.86530 1.22972 1.33988 1.84422 1.24007 0.92331 0.81042 0.71634 1.90651 1.67378 1.36349 1.45434 1.21800 0.86198 1.01789 1.06336 1.21402 0.83069 0.93206 1.03016 1.43666 1.03643 1.64267 1.06472 1.19052 1.08918 1.29587 0.90800 0.87382 1.25304 0.96894 0.96624 0.94598 1.69756 1.42616 1.36470 0.99600 0.87121 0.81440 0.82246 0.80205 1.19506 1.21179 1.18158 1.20100 0.88850 0.80101 0.83123 1.90589 1.70482 1.54576 1.31767 1.20248 0.94565 1.05910 0.90506 1.21300 1.03910 0.93666 0.99178 1.21243 0.88229 0.94818 0.88585 1.20887 1.04073 0.92984 0.98709 1.67781 1.17724 1.32984 1.07387 1.19714 0.90011 0.82694 0.87553 1.84695 1.35354 1.93984 1.12238 1.67305 1.16853 1.28517 1.16400 1.18869 0.88627 0.85943 0.86071 1.84813 1.38978 1.27269 1.76048 0.88388 0.92045 0.92117 0.87422 0.86742 0.90204 0.90646 0.91233 0.87686 0.87465 0.88997 0.89877 0.89205 0.73247 0.73528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.49 10.56 -39.24 -0.41 -5.90 16 3 C 0.47 8.31 7.96 36.01 0.29 8.60 16 4 O -0.51 -10.43 15.73 -18.75 -0.29 -10.72 16 5 C -0.12 -2.19 6.09 -27.88 -0.17 -2.36 16 6 C 0.12 2.49 3.22 -4.04 -0.01 2.48 16 7 N -0.46 -9.93 2.18 -114.81 -0.25 -10.18 16 8 C -0.36 -8.15 9.05 -14.94 -0.14 -8.29 16 9 H 0.11 2.47 7.23 -52.49 -0.38 2.09 16 10 C 0.08 1.82 5.26 -17.47 -0.09 1.73 16 11 N -0.85 -21.57 13.96 55.50 0.77 -20.79 16 12 Si 0.86 19.77 25.05 -169.99 -4.26 15.51 16 13 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.49 10.08 7.58 -10.98 -0.08 10.00 16 17 O -0.59 -13.59 15.72 5.54 0.09 -13.51 16 18 C -0.07 -1.19 3.98 -29.04 -0.12 -1.31 16 19 C -0.17 -2.86 4.42 -104.20 -0.46 -3.32 16 20 C 0.22 3.33 6.82 -82.33 -0.56 2.77 16 21 C -0.11 -1.33 9.83 36.00 0.35 -0.98 16 22 N -0.53 -8.52 10.40 -11.01 -0.11 -8.63 16 23 C 0.51 8.09 8.71 -91.28 -0.80 7.30 16 24 O -0.46 -6.01 13.64 -18.08 -0.25 -6.26 16 25 N -0.55 -9.47 10.49 -14.79 -0.16 -9.62 16 26 C 0.39 6.59 7.81 -16.72 -0.13 6.46 16 27 O -0.46 -7.15 12.74 -18.24 -0.23 -7.38 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 33 H 0.08 1.82 3.61 -51.93 -0.19 1.63 16 34 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 35 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.11 1.53 5.60 -51.93 -0.29 1.24 16 37 H 0.11 1.72 7.58 -51.93 -0.39 1.32 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.99 6.06 -51.93 -0.31 0.67 16 41 H 0.41 3.24 9.06 45.56 0.41 3.65 16 42 H 0.41 3.82 9.06 45.56 0.41 4.24 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -33.88 363.71 -3.72 -37.61 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.25 Total: 9.85 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: -0.85 Total: 24.54 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.25 Total: -49.23 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.10 Total: -43.77 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.26 Total: 15.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.88 -3.72 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454934600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.793 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds