Wall clock time and date at job start Tue Mar 31 2020 22:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00282 * 2 1 4 4 O 1.20821 * 119.99971 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99748 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46911 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47064 * 180.02562 * 6 5 3 8 8 C 1.37090 * 119.99756 * 263.62162 * 7 6 5 9 9 H 1.07995 * 120.00313 * 142.25173 * 8 7 6 10 10 C 1.38954 * 120.00117 * 322.24772 * 8 7 6 11 11 N 1.31409 * 120.00149 * 157.64476 * 10 8 7 12 12 Si 1.86797 * 119.99850 * 337.64419 * 10 8 7 13 13 H 1.48499 * 109.47387 * 95.70082 * 12 10 8 14 14 H 1.48508 * 109.47303 * 215.70087 * 12 10 8 15 15 H 1.48505 * 109.47505 * 335.70169 * 12 10 8 16 16 C 1.34775 * 119.99984 * 83.61739 * 7 6 5 17 17 O 1.21295 * 119.99925 * 0.02562 * 16 7 6 18 18 C 1.50702 * 119.99794 * 180.02562 * 16 7 6 19 19 C 1.50697 * 109.46852 * 180.02562 * 18 16 7 20 20 C 1.38234 * 120.76434 * 269.97332 * 19 18 16 21 21 C 1.50697 * 120.37296 * 0.04547 * 20 19 18 22 22 N 1.32454 * 119.24677 * 180.02562 * 20 19 18 23 23 C 1.32323 * 120.90129 * 0.02562 * 22 20 19 24 24 O 1.35462 * 119.16183 * 180.02562 * 23 22 20 25 25 N 1.32280 * 121.67076 * 359.71458 * 23 22 20 26 26 C 1.32775 * 120.66337 * 0.57377 * 25 23 22 27 27 O 1.35516 * 120.47948 * 179.71554 * 26 25 23 28 28 H 1.08997 * 109.47765 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46316 * 300.00082 * 1 2 3 30 30 H 1.08998 * 109.46764 * 59.99666 * 1 2 3 31 31 H 1.08998 * 109.47038 * 60.00339 * 5 3 2 32 32 H 1.09001 * 109.47450 * 300.00140 * 5 3 2 33 33 H 1.08998 * 109.47192 * 60.00189 * 6 5 3 34 34 H 1.09004 * 109.46924 * 299.99416 * 6 5 3 35 35 H 0.97008 * 120.00068 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47069 * 59.99894 * 18 16 7 37 37 H 1.09003 * 109.47198 * 299.99825 * 18 16 7 38 38 H 1.09005 * 109.46539 * 90.00437 * 21 20 19 39 39 H 1.09006 * 109.46719 * 209.99819 * 21 20 19 40 40 H 1.08993 * 109.47711 * 329.99926 * 21 20 19 41 41 H 0.96697 * 113.99855 * 89.99893 * 24 23 22 42 42 H 0.96695 * 114.00081 * 269.72482 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2746 -0.0006 6 6 4.0003 2.7419 0.0002 7 7 5.4634 2.8184 -0.0010 8 6 6.1419 2.9851 1.1785 9 1 7.0804 2.4752 1.3382 10 6 5.6223 3.8101 2.1685 11 7 5.9933 3.6501 3.4189 12 14 4.3962 5.1467 1.7218 13 1 3.0155 4.6428 1.9334 14 1 4.6260 6.3364 2.5805 15 1 4.5723 5.5239 0.2963 16 6 6.1421 2.7250 -1.1616 17 8 5.5416 2.5779 -2.2052 18 6 7.6471 2.8032 -1.1627 19 6 8.1557 2.6736 -2.5753 20 6 8.4563 1.4337 -3.1077 21 6 8.2785 0.1862 -2.2811 22 7 8.9018 1.3547 -4.3525 23 6 9.0619 2.4434 -5.0874 24 8 9.5193 2.3217 -6.3566 25 7 8.7807 3.6470 -4.6161 26 6 8.3355 3.8011 -3.3748 27 8 8.0541 5.0365 -2.8939 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7803 0.8891 33 1 3.6110 3.2354 0.8906 34 1 3.6103 3.2365 -0.8894 35 1 5.6302 4.2258 4.1100 36 1 8.0533 1.9952 -0.5543 37 1 7.9614 3.7620 -0.7503 38 1 7.2700 -0.2025 -2.4224 39 1 9.0043 -0.5640 -2.5951 40 1 8.4327 0.4227 -1.2284 41 1 8.8218 2.2112 -7.0172 42 1 8.8026 5.4703 -2.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454934600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:50 Heat of formation + Delta-G solvation = -165.745436 kcal Electronic energy + Delta-G solvation = -30177.834327 eV Core-core repulsion = 25737.904185 eV Total energy + Delta-G solvation = -4439.930142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52678 -41.65285 -40.61650 -39.22816 -38.10814 -37.73162 -36.93053 -35.21932 -34.23432 -33.74369 -32.58391 -30.24882 -28.94976 -28.16004 -26.76976 -25.62616 -24.19064 -23.65135 -21.94305 -20.94083 -20.34980 -19.64064 -19.16383 -19.05486 -18.44750 -18.14628 -17.79998 -17.54431 -16.88697 -16.84842 -16.47179 -16.05214 -15.69094 -15.28082 -15.19107 -14.79609 -14.72950 -14.46728 -14.37791 -14.09513 -13.99987 -13.65039 -13.56209 -13.48906 -13.37971 -13.05237 -12.92630 -12.75807 -12.68569 -12.42982 -12.10516 -11.89263 -11.85159 -11.77573 -11.67848 -11.42869 -11.19207 -10.66029 -10.37046 -10.06115 -9.80053 -8.52578 -6.11708 -0.35914 -0.14750 1.05991 1.19299 1.33162 1.42250 1.58078 1.83543 1.89758 2.17676 2.28985 2.60210 2.72497 2.97531 3.26194 3.65711 3.70912 3.79628 3.86982 4.02612 4.07292 4.26977 4.28218 4.28978 4.34394 4.43565 4.54722 4.66180 4.67903 4.71717 4.83009 4.85905 4.91695 4.99272 5.26234 5.33305 5.38584 5.71188 6.09908 6.23939 6.46457 6.49649 6.61765 6.86350 6.96650 7.40257 7.76197 8.59988 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003980 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.136619 B = 7033.427521 C = 8482.282670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.543 6.543 5 C -0.114 4.114 6 C 0.115 3.885 7 N -0.469 5.469 8 C -0.337 4.337 9 H 0.114 0.886 10 C 0.051 3.949 11 N -0.879 5.879 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.282 1.282 15 H -0.273 1.273 16 C 0.489 3.511 17 O -0.613 6.613 18 C -0.063 4.063 19 C -0.190 4.190 20 C 0.216 3.784 21 C -0.109 4.109 22 N -0.541 5.541 23 C 0.505 3.495 24 O -0.461 6.461 25 N -0.575 5.575 26 C 0.386 3.614 27 O -0.479 6.479 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.279 0.721 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.430 0.570 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -7.467 -6.922 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.434 6.434 5 C -0.152 4.152 6 C -0.009 4.009 7 N -0.190 5.190 8 C -0.464 4.464 9 H 0.131 0.869 10 C -0.156 4.156 11 N -0.516 5.516 12 Si 0.723 3.277 13 H -0.206 1.206 14 H -0.209 1.209 15 H -0.198 1.198 16 C 0.280 3.720 17 O -0.499 6.499 18 C -0.103 4.103 19 C -0.196 4.196 20 C 0.071 3.929 21 C -0.165 4.165 22 N -0.269 5.269 23 C 0.200 3.800 24 O -0.267 6.267 25 N -0.313 5.313 26 C 0.199 3.801 27 O -0.289 6.289 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.293 0.707 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 1.258 -7.266 -8.158 10.997 hybrid contribution -1.381 1.636 0.640 2.234 sum -0.123 -5.630 -7.517 9.393 Atomic orbital electron populations 1.23598 0.74700 1.05964 1.02453 1.86506 1.25172 1.32163 1.83648 1.23905 0.92274 0.81342 0.70899 1.90642 1.68020 1.37572 1.47146 1.21636 0.86712 0.99453 1.07403 1.21286 0.83139 0.95279 1.01192 1.43770 1.03695 1.64968 1.06593 1.19106 1.08598 1.28129 0.90530 0.86882 1.25546 0.97653 0.97547 0.94812 1.69773 1.44160 1.37608 1.00030 0.86658 0.80414 0.81726 0.78924 1.20572 1.20891 1.19780 1.20739 0.90478 0.78517 0.82217 1.90577 1.71524 1.55246 1.32515 1.20214 0.91435 1.07231 0.91448 1.21290 1.05207 0.94053 0.99055 1.21768 0.86885 0.95630 0.88598 1.21006 1.04517 0.92042 0.98964 1.67905 1.18449 1.32816 1.07707 1.19977 0.89068 0.82591 0.88384 1.84652 1.36413 1.93873 1.11743 1.67361 1.18053 1.29136 1.16713 1.19082 0.88290 0.86478 0.86224 1.84752 1.40722 1.27136 1.76315 0.84362 0.92109 0.92082 0.86357 0.85490 0.91849 0.92585 0.91082 0.85243 0.86820 0.89060 0.88006 0.87825 0.70741 0.70921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.36 -10.23 10.56 -51.33 -0.54 -10.77 16 3 C 0.47 16.43 7.96 71.24 0.57 17.00 16 4 O -0.54 -22.25 15.73 21.98 0.35 -21.90 16 5 C -0.11 -3.95 6.09 29.85 0.18 -3.77 16 6 C 0.11 4.89 3.22 86.38 0.28 5.16 16 7 N -0.47 -19.82 2.18 -635.52 -1.39 -21.21 16 8 C -0.34 -14.94 9.05 84.04 0.76 -14.18 16 9 H 0.11 4.91 7.23 -2.91 -0.02 4.89 16 10 C 0.05 2.42 5.26 84.93 0.45 2.87 16 11 N -0.88 -44.09 13.96 21.66 0.30 -43.79 16 12 Si 0.89 40.93 25.05 68.60 1.72 42.65 16 13 H -0.28 -13.08 6.69 99.48 0.67 -12.42 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 16 C 0.49 19.60 7.58 87.66 0.66 20.27 16 17 O -0.61 -27.81 15.72 -3.08 -0.05 -27.86 16 18 C -0.06 -1.98 3.98 29.10 0.12 -1.86 16 19 C -0.19 -5.93 4.42 -19.59 -0.09 -6.01 16 20 C 0.22 6.24 6.82 42.46 0.29 6.53 16 21 C -0.11 -2.35 9.83 71.23 0.70 -1.65 16 22 N -0.54 -16.43 10.40 -301.69 -3.14 -19.57 16 23 C 0.50 15.51 8.71 180.58 1.57 17.09 16 24 O -0.46 -11.32 13.64 -87.60 -1.19 -12.52 16 25 N -0.57 -19.13 10.49 -426.36 -4.47 -23.60 16 26 C 0.39 12.60 7.81 84.83 0.66 13.27 16 27 O -0.48 -14.35 12.74 -88.19 -1.12 -15.47 16 28 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 31 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 32 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 33 H 0.06 2.91 3.61 -2.39 -0.01 2.90 16 34 H 0.06 2.57 7.58 -2.38 -0.02 2.55 16 35 H 0.28 13.36 8.31 -92.70 -0.77 12.59 16 36 H 0.13 3.40 5.60 -2.39 -0.01 3.38 16 37 H 0.11 3.43 7.58 -2.39 -0.02 3.41 16 38 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.10 1.94 6.06 -2.39 -0.01 1.92 16 41 H 0.43 6.09 9.06 -74.06 -0.67 5.42 16 42 H 0.43 7.64 9.06 -74.06 -0.67 6.97 16 Total: -1.00 -71.75 363.71 -2.45 -74.20 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.26 Total: 23.40 kcal Atomic # 6 Polarization: 49.09 SS G_CDS: 7.35 Total: 56.44 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -8.69 Total: -108.17 kcal Atomic # 8 Polarization: -85.96 SS G_CDS: -2.56 Total: -88.52 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.72 Total: 42.65 kcal Total: -71.75 -2.45 -74.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454934600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.546 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds