Wall clock time and date at job start Tue Mar 31 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35231 * 107.86649 * 179.83718 * 11 10 9 13 13 C 1.40428 * 107.87011 * 0.42675 * 12 11 10 14 14 N 1.40060 * 125.98252 * 179.73722 * 13 12 11 15 15 C 1.34784 * 119.99682 * 0.02562 * 14 13 12 16 16 O 1.21537 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.48120 * 120.00128 * 180.02562 * 15 14 13 18 18 C 1.39256 * 119.69079 * 179.73106 * 17 15 14 19 19 C 1.38694 * 119.18697 * 179.71160 * 18 17 15 20 20 C 1.38426 * 118.55720 * 0.54510 * 19 18 17 21 21 C 1.39247 * 119.30341 * 359.73756 * 20 19 18 22 22 N 1.39847 * 119.62156 * 179.97438 * 21 20 19 23 23 C 1.34810 * 126.85168 * 179.97438 * 22 21 20 24 24 N 1.30809 * 108.01846 * 179.97438 * 23 22 21 25 25 C 1.33297 * 109.84802 * 0.02562 * 24 23 22 26 26 N 1.30709 * 109.01702 * 359.70870 * 25 24 23 27 27 N 1.31986 * 120.76402 * 359.97243 * 21 20 19 28 28 N 1.31240 * 108.04229 * 359.73425 * 13 12 11 29 29 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 31 31 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 32 32 H 1.08000 * 126.06444 * 0.02562 * 11 10 9 33 33 H 1.08000 * 126.06812 * 180.16297 * 12 11 10 34 34 H 0.97000 * 120.00309 * 180.02562 * 14 13 12 35 35 H 1.07999 * 120.40654 * 359.97438 * 18 17 15 36 36 H 1.08004 * 120.72475 * 180.28217 * 19 18 17 37 37 H 1.08004 * 120.34991 * 179.70691 * 20 19 18 38 38 H 1.07997 * 125.98653 * 0.02562 * 23 22 21 39 39 H 1.08004 * 125.48996 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0539 -4.4044 -0.5779 13 6 4.2969 -4.6708 0.5745 14 7 4.2287 -5.8964 1.2490 15 6 4.9325 -6.9538 0.7983 16 8 5.6267 -6.8436 -0.1932 17 6 4.8599 -8.2500 1.5113 18 6 5.5854 -9.3399 1.0367 19 6 5.5145 -10.5470 1.7159 20 6 4.7115 -10.6274 2.8405 21 6 4.0076 -9.5005 3.2574 22 7 3.1940 -9.5744 4.3924 23 6 2.4536 -8.5804 4.9225 24 7 1.8385 -9.0518 5.9763 25 6 2.1584 -10.3339 6.1513 26 7 2.9807 -10.7008 5.2038 27 7 4.0996 -8.3634 2.5937 28 7 3.6647 -3.5705 0.9089 29 1 -0.4850 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9023 31 1 3.8785 -0.6824 0.8776 32 1 5.2842 -2.6013 -1.7657 33 1 5.6858 -5.1075 -1.1002 34 1 3.6749 -5.9842 2.0405 35 1 6.1991 -9.2450 0.1531 36 1 6.0704 -11.4070 1.3723 37 1 4.6312 -11.5546 3.3887 38 1 2.3804 -7.5719 4.5431 39 1 1.7928 -10.9687 6.9449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456662936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:47 Heat of formation + Delta-G solvation = 182.692735 kcal Electronic energy + Delta-G solvation = -26996.552737 eV Core-core repulsion = 22943.626430 eV Total energy + Delta-G solvation = -4052.926307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.47902 -42.38300 -41.64458 -40.16927 -36.40079 -35.45898 -35.26563 -34.05659 -33.04924 -32.41061 -31.29667 -31.00820 -29.09357 -26.57571 -25.74323 -24.56757 -23.53199 -22.87218 -22.61109 -21.80306 -21.09521 -19.80302 -19.11435 -18.79354 -18.19760 -17.26963 -17.19365 -17.17712 -16.69886 -16.66956 -16.43077 -16.16875 -15.69118 -15.40833 -15.17880 -14.85862 -14.81298 -14.54309 -14.38014 -13.88010 -13.80963 -13.44785 -13.32322 -13.01300 -12.66991 -12.23142 -12.14864 -11.82954 -11.78842 -11.62940 -11.44669 -11.28138 -11.21127 -11.05595 -10.91674 -10.87472 -9.92942 -9.79489 -9.15128 -8.37190 -6.47763 -0.77851 -0.44117 0.68007 0.71935 0.97391 1.22128 1.37828 1.39940 1.44922 1.49548 1.78163 2.12035 2.17969 2.29233 2.60916 2.71362 2.95609 3.21043 3.31639 3.54912 3.74295 3.80755 3.91358 4.02608 4.14936 4.21155 4.29588 4.59188 4.71025 4.76866 4.84600 4.88047 4.92562 4.95318 5.07652 5.16993 5.24625 5.29468 5.66722 5.81723 5.99062 6.00840 6.24734 6.40080 6.58351 6.79360 6.87696 6.98784 7.15263 8.79924 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.002465 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.944580 B =11358.554522 C =13219.157253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.227 1.227 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.238 3.762 10 N -0.342 5.342 11 C 0.063 3.937 12 C -0.291 4.291 13 C 0.261 3.739 14 N -0.611 5.611 15 C 0.583 3.417 16 O -0.520 6.520 17 C 0.101 3.899 18 C -0.101 4.101 19 C -0.035 4.035 20 C -0.125 4.125 21 C 0.344 3.656 22 N -0.342 5.342 23 C 0.286 3.714 24 N -0.561 5.561 25 C 0.217 3.783 26 N -0.324 5.324 27 N -0.494 5.494 28 N -0.346 5.346 29 H 0.272 0.728 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.214 0.786 33 H 0.175 0.825 34 H 0.425 0.575 35 H 0.176 0.824 36 H 0.203 0.797 37 H 0.170 0.830 38 H 0.238 0.762 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.875 -23.424 5.217 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.150 1.150 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.085 4.085 12 C -0.321 4.321 13 C 0.006 3.994 14 N -0.259 5.259 15 C 0.368 3.632 16 O -0.394 6.394 17 C -0.038 4.038 18 C -0.123 4.123 19 C -0.060 4.060 20 C -0.147 4.147 21 C 0.114 3.886 22 N -0.127 5.127 23 C -0.010 4.010 24 N -0.287 5.287 25 C -0.085 4.085 26 N -0.149 5.149 27 N -0.210 5.210 28 N -0.176 5.176 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.231 0.769 33 H 0.192 0.808 34 H 0.263 0.737 35 H 0.193 0.807 36 H 0.220 0.780 37 H 0.188 0.812 38 H 0.254 0.746 39 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 13.996 -22.379 5.744 27.014 hybrid contribution -0.107 0.149 -0.223 0.289 sum 13.889 -22.231 5.521 26.788 Atomic orbital electron populations 1.70054 1.08634 1.28806 1.50688 1.25934 0.95762 1.03585 0.93222 0.85619 0.79968 0.77191 0.79597 1.19147 1.14980 1.20413 1.21239 0.90570 0.93704 1.53022 0.95599 1.19923 0.94097 0.74304 0.99795 1.48552 1.34251 1.09978 1.19626 1.23302 0.94175 0.94653 0.96347 1.21788 1.11713 0.97355 1.01267 1.19439 0.98071 0.86914 0.94949 1.42347 1.46967 1.06268 1.30289 1.18059 0.78953 0.82586 0.83566 1.90723 1.40139 1.83195 1.25364 1.20334 0.97146 0.94015 0.92302 1.22476 0.97161 0.91385 1.01249 1.22092 0.94417 0.98442 0.91075 1.22206 0.95725 0.98555 0.98254 1.17779 0.92918 0.91219 0.86723 1.47643 1.34683 1.09502 1.20909 1.26807 0.87388 0.97280 0.89501 1.70791 1.27806 1.11649 1.18461 1.27069 0.92401 0.91598 0.97437 1.78088 1.23854 1.06064 1.06930 1.66417 1.20059 1.26285 1.08233 1.77347 1.25630 0.96811 1.17853 0.91898 0.89650 0.93719 0.76942 0.80769 0.73723 0.80674 0.77970 0.81235 0.74589 0.72175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.96 40.53 27.47 68.60 1.88 42.42 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.23 -8.22 6.54 99.48 0.65 -7.57 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -31.52 9.79 25.60 0.25 -31.27 16 8 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 9 C 0.24 10.89 5.33 85.63 0.46 11.35 16 10 N -0.34 -15.09 3.67 -351.85 -1.29 -16.38 16 11 C 0.06 2.24 11.43 83.52 0.95 3.19 16 12 C -0.29 -10.52 9.60 22.11 0.21 -10.31 16 13 C 0.26 10.27 8.10 133.36 1.08 11.35 16 14 N -0.61 -19.41 5.44 -309.88 -1.68 -21.09 16 15 C 0.58 16.02 7.78 86.87 0.68 16.70 16 16 O -0.52 -15.76 13.44 -3.83 -0.05 -15.82 16 17 C 0.10 2.07 6.75 41.87 0.28 2.35 16 18 C -0.10 -1.32 9.63 22.62 0.22 -1.10 16 19 C -0.03 -0.26 10.16 22.42 0.23 -0.03 16 20 C -0.13 -1.50 9.72 22.56 0.22 -1.28 16 21 C 0.34 6.39 7.56 132.92 1.01 7.40 16 22 N -0.34 -6.89 3.81 -196.08 -0.75 -7.64 16 23 C 0.29 5.94 12.26 180.25 2.21 8.15 16 24 N -0.56 -12.07 11.19 -203.69 -2.28 -14.34 16 25 C 0.22 3.58 13.03 180.75 2.35 5.94 16 26 N -0.32 -6.05 12.01 -61.21 -0.74 -6.79 16 27 N -0.49 -10.31 9.07 -181.91 -1.65 -11.96 16 28 N -0.35 -16.04 12.42 -54.49 -0.68 -16.72 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.09 3.35 7.12 -2.39 -0.02 3.34 16 31 H 0.04 1.98 7.57 -2.39 -0.02 1.96 16 32 H 0.21 5.37 8.06 -2.91 -0.02 5.34 16 33 H 0.18 5.83 5.91 -2.91 -0.02 5.81 16 34 H 0.42 12.38 8.15 -92.71 -0.76 11.63 16 35 H 0.18 1.82 7.63 -2.91 -0.02 1.80 16 36 H 0.20 -0.30 8.06 -2.91 -0.02 -0.33 16 37 H 0.17 1.56 7.72 -2.91 -0.02 1.54 16 38 H 0.24 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.26 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -82.10 352.54 4.00 -78.10 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.32 Total: 24.57 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 10.61 Total: 23.68 kcal Atomic # 7 Polarization: -144.19 SS G_CDS: -8.76 Total: -152.95 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.05 Total: -15.82 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.88 Total: 42.42 kcal Total: -82.10 4.00 -78.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456662936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.791 kcal (2) G-P(sol) polarization free energy of solvation -82.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds