Wall clock time and date at job start Tue Mar 31 2020 22:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48495 * 109.46868 * 95.24683 * 3 2 1 5 5 H 1.48500 * 109.47038 * 215.24689 * 3 2 1 6 6 H 1.48499 * 109.46898 * 335.24945 * 3 2 1 7 7 C 1.40053 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99827 * 357.97546 * 7 2 1 9 9 C 1.46377 * 119.99680 * 177.97977 * 7 2 1 10 10 O 1.21686 * 120.00027 * 25.93584 * 9 7 2 11 11 N 1.34773 * 119.99395 * 205.93754 * 9 7 2 12 12 C 1.46961 * 120.59759 * 354.77930 * 11 9 7 13 13 C 1.53819 * 108.39929 * 124.76034 * 12 11 9 14 14 N 1.46964 * 108.57979 * 49.63238 * 13 12 11 15 15 C 1.34784 * 120.58887 * 124.66864 * 14 13 12 16 16 O 1.21606 * 119.99610 * 185.91897 * 15 14 13 17 17 C 1.47427 * 119.99894 * 5.91996 * 15 14 13 18 18 C 1.39823 * 120.18538 * 47.79500 * 17 15 14 19 19 C 1.37906 * 119.93529 * 179.97438 * 18 17 15 20 20 F 1.35104 * 119.83980 * 179.97438 * 19 18 17 21 21 C 1.38799 * 120.31852 * 359.97438 * 19 18 17 22 22 C 1.38098 * 120.38018 * 0.02562 * 21 19 18 23 23 F 1.35099 * 119.97718 * 179.97438 * 22 21 19 24 24 C 1.39141 * 120.05084 * 359.67419 * 22 21 19 25 25 N 1.39145 * 120.15745 * 180.31681 * 24 22 21 26 26 C 1.46957 * 118.81544 * 304.65581 * 14 13 12 27 27 C 1.46966 * 120.59306 * 175.06076 * 11 9 7 28 28 H 0.97003 * 119.99950 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.61575 * 244.53808 * 12 11 9 30 30 H 1.09001 * 109.61282 * 5.05553 * 12 11 9 31 31 H 1.09003 * 109.73920 * 289.85110 * 13 12 11 32 32 H 1.09000 * 109.53687 * 169.30687 * 13 12 11 33 33 H 1.08000 * 120.03128 * 359.97438 * 18 17 15 34 34 H 1.08009 * 119.81268 * 180.02562 * 21 19 18 35 35 H 0.97001 * 119.99833 * 185.71393 * 25 24 22 36 36 H 0.96996 * 119.99925 * 5.72688 * 25 24 22 37 37 H 1.09003 * 109.60801 * 295.47611 * 26 14 13 38 38 H 1.09005 * 109.61288 * 174.97025 * 26 14 13 39 39 H 1.09001 * 109.60752 * 354.94519 * 27 11 9 40 40 H 1.09001 * 109.61393 * 115.45561 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5992 1.9823 1.3942 5 1 3.4785 1.4747 -0.8080 6 1 1.3872 2.6821 -0.5862 7 6 2.0070 -1.2129 -0.0005 8 1 1.4675 -2.1479 0.0321 9 6 3.4701 -1.2132 -0.0452 10 8 4.0920 -0.2579 0.3805 11 7 4.1283 -2.2717 -0.5580 12 6 3.3980 -3.4784 -0.9705 13 6 3.7452 -3.7779 -2.4388 14 7 5.2068 -3.7482 -2.5897 15 6 5.8651 -4.8067 -3.1024 16 8 7.0809 -4.8146 -3.1233 17 6 5.1110 -5.9548 -3.6379 18 6 4.0424 -5.7466 -4.5153 19 6 3.3410 -6.8243 -5.0135 20 9 2.3084 -6.6208 -5.8607 21 6 3.6906 -8.1171 -4.6487 22 6 4.7437 -8.3378 -3.7830 23 9 5.0767 -9.5995 -3.4330 24 6 5.4661 -7.2622 -3.2759 25 7 6.5317 -7.4824 -2.4088 26 6 5.9377 -2.5437 -2.1719 27 6 5.5899 -2.2421 -0.7089 28 1 -0.4850 0.8401 0.0004 29 1 3.6953 -4.3185 -0.3430 30 1 2.3257 -3.3080 -0.8741 31 1 3.2955 -3.0238 -3.0847 32 1 3.3696 -4.7650 -2.7081 33 1 3.7667 -4.7426 -4.8025 34 1 3.1359 -8.9552 -5.0441 35 1 6.9809 -6.7307 -1.9916 36 1 6.8255 -8.3877 -2.2215 37 1 5.6440 -1.7017 -2.7988 38 1 7.0101 -2.7156 -2.2650 39 1 5.9655 -1.2549 -0.4396 40 1 6.0397 -2.9961 -0.0630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465872635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:55 Heat of formation + Delta-G solvation = -143.969385 kcal Electronic energy + Delta-G solvation = -29736.388678 eV Core-core repulsion = 25186.315301 eV Total energy + Delta-G solvation = -4550.073377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.98491 -49.81400 -41.83698 -40.34082 -39.21881 -37.81360 -35.65781 -34.97943 -34.79149 -33.04641 -31.69516 -29.62059 -29.25719 -28.02706 -25.59753 -24.81559 -23.56176 -23.35090 -21.72428 -20.41685 -19.43165 -19.00642 -18.43340 -18.33892 -18.03275 -17.45096 -17.08846 -16.97666 -16.87951 -16.57096 -16.28802 -16.25815 -16.21369 -16.04660 -15.69079 -15.39643 -15.04612 -14.67484 -14.48770 -14.24585 -14.04459 -13.87667 -13.61133 -13.40161 -13.30418 -13.01834 -12.91542 -12.69968 -12.50966 -12.37331 -12.28394 -11.59778 -11.57376 -11.15772 -11.12567 -10.18719 -10.12233 -10.03785 -9.17794 -8.74536 -8.66980 -6.95344 -0.39886 0.06184 1.33542 1.38431 1.40528 1.61756 1.71502 2.09616 2.29337 2.34123 2.57437 2.61598 2.85096 3.26190 3.26580 3.33390 3.62033 3.82691 3.88214 3.90938 4.14097 4.19373 4.32677 4.39506 4.48026 4.56255 4.65276 4.69251 4.73943 4.81915 4.84552 4.89632 5.00128 5.10796 5.33310 5.56484 5.69878 5.93213 6.14187 6.17079 6.25122 6.59051 6.64795 6.90196 7.09202 7.93926 8.30887 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.003271 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.304766 B = 8557.370954 C = 9463.339793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.073 3.927 3 Si 0.994 3.006 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.300 1.300 7 C -0.548 4.548 8 H 0.089 0.911 9 C 0.556 3.444 10 O -0.640 6.640 11 N -0.630 5.630 12 C 0.104 3.896 13 C 0.093 3.907 14 N -0.595 5.595 15 C 0.574 3.426 16 O -0.565 6.565 17 C -0.179 4.179 18 C -0.072 4.072 19 C 0.057 3.943 20 F -0.137 7.137 21 C -0.102 4.102 22 C 0.036 3.964 23 F -0.131 7.131 24 C 0.234 3.766 25 N -0.846 5.846 26 C 0.108 3.892 27 C 0.106 3.894 28 H 0.290 0.710 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.410 0.590 36 H 0.414 0.586 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -18.008 -10.534 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.142 4.142 3 Si 0.826 3.174 4 H -0.219 1.219 5 H -0.203 1.203 6 H -0.229 1.229 7 C -0.585 4.585 8 H 0.107 0.893 9 C 0.362 3.638 10 O -0.532 6.532 11 N -0.363 5.363 12 C -0.019 4.019 13 C -0.030 4.030 14 N -0.326 5.326 15 C 0.364 3.636 16 O -0.445 6.445 17 C -0.188 4.188 18 C -0.092 4.092 19 C 0.035 3.965 20 F -0.115 7.115 21 C -0.122 4.122 22 C 0.012 3.988 23 F -0.110 7.110 24 C 0.122 3.878 25 N -0.384 5.384 26 C -0.015 4.015 27 C -0.018 4.018 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.174 0.826 34 H 0.192 0.808 35 H 0.242 0.758 36 H 0.245 0.755 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.360 -17.526 -10.327 21.993 hybrid contribution 0.247 0.636 0.461 0.823 sum 8.607 -16.890 -9.866 21.370 Atomic orbital electron populations 1.69530 1.08075 1.30816 1.40022 1.26089 0.95228 1.03165 0.89705 0.84916 0.76918 0.76899 0.78646 1.21904 1.20317 1.22905 1.20888 0.89024 0.95399 1.53185 0.89288 1.18356 0.88800 0.80416 0.76189 1.90277 1.70213 1.37285 1.55468 1.47711 1.06290 1.16547 1.65791 1.22137 0.99044 0.86438 0.94325 1.22574 0.78763 1.04611 0.97020 1.48013 1.08513 1.15225 1.60857 1.18097 0.86627 0.81870 0.77026 1.90763 1.14160 1.80769 1.58839 1.18694 1.02071 0.90972 1.07082 1.21210 0.92591 1.00301 0.95089 1.16754 0.90236 0.92796 0.96686 1.91534 1.55862 1.95674 1.68466 1.21164 0.96393 0.97899 0.96791 1.16486 0.99678 0.78243 1.04439 1.91497 1.92009 1.36412 1.91089 1.17647 0.88567 0.91277 0.90326 1.42488 1.34143 1.12838 1.48951 1.21969 0.98462 0.86422 0.94636 1.21726 0.81641 1.02554 0.95841 0.89965 0.91343 0.88088 0.90028 0.86243 0.82585 0.80803 0.75819 0.75518 0.91023 0.87406 0.90095 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.24 13.92 21.84 0.30 -45.94 16 2 C 0.07 3.97 5.52 85.30 0.47 4.44 16 3 Si 0.99 49.90 26.12 68.60 1.79 51.69 16 4 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 5 H -0.28 -14.66 6.38 99.48 0.63 -14.03 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.55 -28.99 9.15 24.83 0.23 -28.76 16 8 H 0.09 4.65 6.33 -2.91 -0.02 4.63 16 9 C 0.56 27.68 7.17 86.36 0.62 28.30 16 10 O -0.64 -35.41 11.90 -4.30 -0.05 -35.46 16 11 N -0.63 -24.40 2.94 -822.24 -2.42 -26.82 16 12 C 0.10 3.19 6.53 86.57 0.57 3.75 16 13 C 0.09 2.24 5.44 86.57 0.47 2.71 16 14 N -0.59 -14.87 2.95 -821.01 -2.42 -17.29 16 15 C 0.57 14.13 6.67 86.66 0.58 14.71 16 16 O -0.56 -16.45 14.92 -4.05 -0.06 -16.51 16 17 C -0.18 -3.64 4.87 -19.99 -0.10 -3.74 16 18 C -0.07 -1.28 7.48 22.57 0.17 -1.11 16 19 C 0.06 0.96 7.28 22.33 0.16 1.12 16 20 F -0.14 -2.54 17.26 44.97 0.78 -1.76 16 21 C -0.10 -1.50 9.98 22.37 0.22 -1.27 16 22 C 0.04 0.60 7.30 22.45 0.16 0.76 16 23 F -0.13 -2.18 16.64 44.97 0.75 -1.43 16 24 C 0.23 4.39 6.75 38.68 0.26 4.65 16 25 N -0.85 -14.28 8.87 -50.74 -0.45 -14.73 16 26 C 0.11 2.97 6.60 86.42 0.57 3.54 16 27 C 0.11 3.49 6.58 86.41 0.57 4.06 16 28 H 0.29 14.49 8.29 -92.71 -0.77 13.72 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 3.42 5.46 -2.39 -0.01 3.41 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.12 2.26 5.04 -2.39 -0.01 2.25 16 33 H 0.16 2.52 7.29 -2.91 -0.02 2.50 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.41 7.78 6.74 -92.71 -0.62 7.15 16 36 H 0.41 5.29 8.32 -92.71 -0.77 4.52 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.11 2.78 6.99 -2.38 -0.02 2.76 16 39 H 0.08 2.98 7.02 -2.39 -0.02 2.97 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -66.24 335.51 2.86 -63.38 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -0.32 Total: 11.71 kcal Atomic # 6 Polarization: 28.20 SS G_CDS: 4.95 Total: 33.15 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.98 Total: -104.77 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.11 Total: -51.97 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 1.52 Total: -3.19 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 1.79 Total: 51.69 kcal Total: -66.24 2.86 -63.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465872635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.588 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds