Wall clock time and date at job start Tue Mar 31 2020 22:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00488 * 2 1 4 4 H 1.48503 * 109.47363 * 270.00310 * 3 2 1 5 5 H 1.48502 * 109.47207 * 29.99861 * 3 2 1 6 6 H 1.48498 * 109.47384 * 149.99964 * 3 2 1 7 7 C 1.38816 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00283 * 163.06376 * 7 2 1 9 9 N 1.36938 * 119.99950 * 343.06973 * 7 2 1 10 10 C 1.46935 * 120.62598 * 331.83532 * 9 7 2 11 11 C 1.53198 * 108.77188 * 233.63189 * 10 9 7 12 12 C 1.53035 * 109.31412 * 305.36702 * 11 10 9 13 13 N 1.46499 * 109.46143 * 181.38796 * 12 11 10 14 14 C 1.34773 * 120.00383 * 154.96806 * 13 12 11 15 15 O 1.21585 * 119.99657 * 0.02562 * 14 13 12 16 16 N 1.34768 * 120.00342 * 179.97438 * 14 13 12 17 17 C 1.39053 * 120.00462 * 180.02562 * 16 14 13 18 18 C 1.35268 * 125.50725 * 180.02562 * 17 16 14 19 19 N 1.30465 * 115.57924 * 180.02562 * 18 17 16 20 20 C 1.30632 * 116.02841 * 359.97438 * 19 18 17 21 21 C 1.46804 * 125.47595 * 179.97438 * 20 19 18 22 22 N 1.34780 * 119.99497 * 0.31207 * 21 20 19 23 23 O 1.21684 * 120.00208 * 180.02562 * 21 20 19 24 24 S 1.71075 * 125.50104 * 0.31011 * 17 16 14 25 25 C 1.53038 * 109.52870 * 61.37346 * 12 11 10 26 26 C 1.46917 * 120.63669 * 151.85934 * 9 7 2 27 27 H 0.97000 * 119.99323 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.58494 * 113.85102 * 10 9 7 29 29 H 1.09001 * 109.70547 * 353.48649 * 10 9 7 30 30 H 1.08999 * 109.49346 * 185.41116 * 11 10 9 31 31 H 1.08999 * 109.49600 * 65.31628 * 11 10 9 32 32 H 1.09001 * 109.46270 * 301.35743 * 12 11 10 33 33 H 0.97001 * 119.99864 * 334.97016 * 13 12 11 34 34 H 0.97001 * 119.99905 * 0.02562 * 16 14 13 35 35 H 1.08000 * 122.20734 * 0.02562 * 18 17 16 36 36 H 0.97000 * 119.99950 * 179.72137 * 22 21 20 37 37 H 0.97001 * 120.00217 * 359.71390 * 22 21 20 38 38 H 1.08993 * 109.49979 * 58.57954 * 25 12 11 39 39 H 1.09000 * 109.49993 * 178.68166 * 25 12 11 40 40 H 1.08997 * 109.58991 * 246.15812 * 26 9 7 41 41 H 1.09008 * 109.58551 * 6.43730 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3700 -2.3626 0.3443 10 6 0.2262 -2.3408 1.2663 11 6 0.4982 -3.3201 2.4126 12 6 0.8132 -4.7015 1.8341 13 7 1.0414 -5.6484 2.9284 14 6 0.8379 -6.9663 2.7327 15 8 0.4653 -7.3693 1.6478 16 7 1.0483 -7.8374 3.7392 17 6 0.8389 -9.1971 3.5372 18 6 1.0144 -10.1655 4.4652 19 7 0.7613 -11.3813 4.0655 20 6 0.3717 -11.5075 2.8250 21 6 0.0341 -12.7733 2.1625 22 7 0.1093 -13.9325 2.8460 23 8 -0.3185 -12.7754 0.9979 24 16 0.3241 -9.9162 2.0727 25 6 2.0685 -4.6172 0.9628 26 6 1.8140 -3.6529 -0.2001 27 1 -0.4849 0.8401 0.0004 28 1 -0.6769 -2.6417 0.7353 29 1 0.0965 -1.3357 1.6675 30 1 -0.3822 -3.3854 3.0519 31 1 1.3480 -2.9684 2.9976 32 1 -0.0269 -5.0419 1.2287 33 1 1.3389 -5.3269 3.7938 34 1 1.3459 -7.5159 4.6047 35 1 1.3423 -9.9466 5.4707 36 1 -0.1176 -14.7685 2.4096 37 1 0.3904 -13.9308 3.7744 38 1 2.9032 -4.2531 1.5616 39 1 2.3058 -5.6058 0.5699 40 1 1.0405 -4.0607 -0.8508 41 1 2.7333 -3.5126 -0.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467273685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:07 Heat of formation + Delta-G solvation = 3.558502 kcal Electronic energy + Delta-G solvation = -26234.294572 eV Core-core repulsion = 22276.751622 eV Total energy + Delta-G solvation = -3957.542950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91688 -40.12230 -38.99516 -37.75617 -35.39707 -34.74353 -33.88466 -32.29411 -30.40475 -29.83168 -29.03840 -26.37481 -24.99442 -22.83432 -22.65825 -22.27184 -21.26274 -20.51523 -19.78788 -18.83406 -18.64392 -17.53368 -16.98485 -16.62924 -16.13769 -16.01737 -15.44572 -15.30905 -14.95391 -14.64810 -14.35257 -14.10191 -14.06645 -13.83999 -13.64331 -13.11032 -12.86348 -12.49688 -11.69341 -11.66557 -11.54914 -11.24277 -11.06115 -10.80507 -10.77164 -10.72534 -10.60281 -10.37655 -10.15020 -10.01794 -9.89633 -9.80726 -9.67449 -9.40682 -9.02803 -8.54686 -8.42258 -6.76364 -5.86561 -3.28836 0.07300 0.79613 1.51512 1.99183 2.20076 2.80561 3.05769 3.27729 3.32802 3.40238 3.41901 3.85404 4.08394 4.43678 4.62559 4.90254 5.17465 5.28862 5.37568 5.44864 5.45760 5.70919 5.87447 5.92731 6.03551 6.13818 6.19604 6.42145 6.42503 6.44115 6.48279 6.69052 6.73609 6.90653 6.92934 7.21104 7.29521 7.47927 7.56149 7.73399 7.92128 8.07653 8.37394 9.13540 9.76473 10.32975 11.22546 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.002040 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.381775 B =13721.138160 C =14085.504026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.165 3.835 13 N -0.720 5.720 14 C 0.691 3.309 15 O -0.554 6.554 16 N -0.640 5.640 17 C 0.012 3.988 18 C -0.038 4.038 19 N -0.399 5.399 20 C -0.121 4.121 21 C 0.612 3.388 22 N -0.834 5.834 23 O -0.537 6.537 24 S 0.386 5.614 25 C -0.141 4.141 26 C 0.147 3.853 27 H 0.255 0.745 28 H 0.023 0.977 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.397 0.603 34 H 0.417 0.583 35 H 0.175 0.825 36 H 0.407 0.593 37 H 0.410 0.590 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -21.084 13.217 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.062 3.938 13 N -0.372 5.372 14 C 0.391 3.609 15 O -0.431 6.431 16 N -0.288 5.288 17 C -0.212 4.212 18 C -0.200 4.200 19 N -0.117 5.117 20 C -0.393 4.393 21 C 0.394 3.606 22 N -0.398 5.398 23 O -0.413 6.413 24 S 0.636 5.364 25 C -0.181 4.181 26 C 0.020 3.980 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.231 0.769 34 H 0.255 0.745 35 H 0.192 0.808 36 H 0.238 0.762 37 H 0.240 0.760 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.834 -21.110 10.711 23.687 hybrid contribution 1.165 1.115 2.432 2.918 sum 1.999 -19.995 13.144 24.012 Atomic orbital electron populations 1.70017 1.05263 1.25633 1.53772 1.25064 0.95306 0.98491 1.00770 0.86299 0.79113 0.83558 0.77801 1.21327 1.21549 1.20508 1.19167 0.92600 0.84682 1.41884 0.91622 1.44097 1.35787 1.01705 1.49905 1.20754 0.89015 0.97885 0.87583 1.22580 1.00677 0.94330 1.01083 1.21141 0.98899 0.87419 0.86323 1.45558 1.70927 1.03819 1.16940 1.16113 0.79220 0.82042 0.83557 1.90894 1.52540 1.76216 1.23444 1.41935 1.68848 1.02111 1.15856 1.23517 1.06139 0.88938 1.02621 1.21351 1.11631 0.85452 1.01606 1.66591 1.09408 1.23160 1.12499 1.27522 1.15187 1.01068 0.95533 1.16591 0.76567 0.82325 0.85085 1.43503 1.70901 1.08290 1.17143 1.90922 1.47761 1.86805 1.15809 1.85475 1.54850 0.92637 1.03453 1.22421 0.96947 0.99804 0.98942 1.20877 0.98123 0.86462 0.92518 0.93531 0.95933 0.88863 0.92571 0.92013 0.89477 0.76862 0.74538 0.80800 0.76186 0.76018 0.92219 0.92549 0.95990 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.12 2.99 -172.31 -0.52 -14.64 16 10 C 0.17 3.86 5.30 -3.70 -0.02 3.84 16 11 C -0.15 -2.42 5.55 -26.61 -0.15 -2.57 16 12 C 0.17 2.55 2.42 -67.89 -0.16 2.39 16 13 N -0.72 -8.36 5.08 -58.64 -0.30 -8.66 16 14 C 0.69 8.64 8.49 -86.93 -0.74 7.90 16 15 O -0.55 -8.93 13.53 5.29 0.07 -8.86 16 16 N -0.64 -5.77 5.41 -16.20 -0.09 -5.85 16 17 C 0.01 0.12 7.06 -15.33 -0.11 0.01 16 18 C -0.04 -0.35 11.28 -19.19 -0.22 -0.56 16 19 N -0.40 -4.11 10.21 -11.44 -0.12 -4.23 16 20 C -0.12 -1.39 7.43 -14.60 -0.11 -1.50 16 21 C 0.61 7.01 8.06 -12.80 -0.10 6.91 16 22 N -0.83 -5.91 8.87 30.29 0.27 -5.64 16 23 O -0.54 -7.93 17.77 5.20 0.09 -7.84 16 24 S 0.39 4.80 20.09 -107.50 -2.16 2.64 16 25 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 26 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 27 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 33 H 0.40 3.33 8.62 -40.82 -0.35 2.98 16 34 H 0.42 2.13 8.83 -40.82 -0.36 1.77 16 35 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.41 2.05 8.93 -40.82 -0.36 1.69 16 37 H 0.41 2.21 8.47 -40.82 -0.35 1.87 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.17 7.93 -51.92 -0.41 0.75 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -33.35 357.84 -8.82 -42.17 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.05 Total: 4.24 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -2.01 Total: 10.02 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.13 Total: -63.74 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.16 Total: -16.70 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -2.16 Total: 2.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.35 -8.82 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467273685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.727 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds