Wall clock time and date at job start Tue Mar 31 2020 22:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00488 * 2 1 4 4 H 1.48503 * 109.47363 * 270.00310 * 3 2 1 5 5 H 1.48502 * 109.47207 * 29.99861 * 3 2 1 6 6 H 1.48498 * 109.47384 * 149.99964 * 3 2 1 7 7 C 1.38816 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00283 * 163.06376 * 7 2 1 9 9 N 1.36938 * 119.99950 * 343.06973 * 7 2 1 10 10 C 1.46935 * 120.62598 * 331.83532 * 9 7 2 11 11 C 1.53198 * 108.77188 * 233.63189 * 10 9 7 12 12 C 1.53035 * 109.31412 * 305.36702 * 11 10 9 13 13 N 1.46499 * 109.46143 * 181.38796 * 12 11 10 14 14 C 1.34773 * 120.00383 * 154.96806 * 13 12 11 15 15 O 1.21585 * 119.99657 * 0.02562 * 14 13 12 16 16 N 1.34768 * 120.00342 * 179.97438 * 14 13 12 17 17 C 1.39053 * 120.00462 * 180.02562 * 16 14 13 18 18 C 1.35268 * 125.50725 * 180.02562 * 17 16 14 19 19 N 1.30465 * 115.57924 * 180.02562 * 18 17 16 20 20 C 1.30632 * 116.02841 * 359.97438 * 19 18 17 21 21 C 1.46804 * 125.47595 * 179.97438 * 20 19 18 22 22 N 1.34780 * 119.99497 * 0.31207 * 21 20 19 23 23 O 1.21684 * 120.00208 * 180.02562 * 21 20 19 24 24 S 1.71075 * 125.50104 * 0.31011 * 17 16 14 25 25 C 1.53038 * 109.52870 * 61.37346 * 12 11 10 26 26 C 1.46917 * 120.63669 * 151.85934 * 9 7 2 27 27 H 0.97000 * 119.99323 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.58494 * 113.85102 * 10 9 7 29 29 H 1.09001 * 109.70547 * 353.48649 * 10 9 7 30 30 H 1.08999 * 109.49346 * 185.41116 * 11 10 9 31 31 H 1.08999 * 109.49600 * 65.31628 * 11 10 9 32 32 H 1.09001 * 109.46270 * 301.35743 * 12 11 10 33 33 H 0.97001 * 119.99864 * 334.97016 * 13 12 11 34 34 H 0.97001 * 119.99905 * 0.02562 * 16 14 13 35 35 H 1.08000 * 122.20734 * 0.02562 * 18 17 16 36 36 H 0.97000 * 119.99950 * 179.72137 * 22 21 20 37 37 H 0.97001 * 120.00217 * 359.71390 * 22 21 20 38 38 H 1.08993 * 109.49979 * 58.57954 * 25 12 11 39 39 H 1.09000 * 109.49993 * 178.68166 * 25 12 11 40 40 H 1.08997 * 109.58991 * 246.15812 * 26 9 7 41 41 H 1.09008 * 109.58551 * 6.43730 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3700 -2.3626 0.3443 10 6 0.2262 -2.3408 1.2663 11 6 0.4982 -3.3201 2.4126 12 6 0.8132 -4.7015 1.8341 13 7 1.0414 -5.6484 2.9284 14 6 0.8379 -6.9663 2.7327 15 8 0.4653 -7.3693 1.6478 16 7 1.0483 -7.8374 3.7392 17 6 0.8389 -9.1971 3.5372 18 6 1.0144 -10.1655 4.4652 19 7 0.7613 -11.3813 4.0655 20 6 0.3717 -11.5075 2.8250 21 6 0.0341 -12.7733 2.1625 22 7 0.1093 -13.9325 2.8460 23 8 -0.3185 -12.7754 0.9979 24 16 0.3241 -9.9162 2.0727 25 6 2.0685 -4.6172 0.9628 26 6 1.8140 -3.6529 -0.2001 27 1 -0.4849 0.8401 0.0004 28 1 -0.6769 -2.6417 0.7353 29 1 0.0965 -1.3357 1.6675 30 1 -0.3822 -3.3854 3.0519 31 1 1.3480 -2.9684 2.9976 32 1 -0.0269 -5.0419 1.2287 33 1 1.3389 -5.3269 3.7938 34 1 1.3459 -7.5159 4.6047 35 1 1.3423 -9.9466 5.4707 36 1 -0.1176 -14.7685 2.4096 37 1 0.3904 -13.9308 3.7744 38 1 2.9032 -4.2531 1.5616 39 1 2.3058 -5.6058 0.5699 40 1 1.0405 -4.0607 -0.8508 41 1 2.7333 -3.5126 -0.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467273685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:07 Heat of formation + Delta-G solvation = -24.322718 kcal Electronic energy + Delta-G solvation = -26235.503592 eV Core-core repulsion = 22276.751622 eV Total energy + Delta-G solvation = -3958.751970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87782 -40.99661 -39.91566 -39.18484 -36.44652 -36.08619 -34.67928 -33.97770 -31.90411 -31.33783 -30.11005 -27.42633 -26.61180 -24.12624 -23.79440 -23.63994 -22.41939 -21.36685 -21.17591 -19.94190 -19.52401 -18.75370 -18.25045 -17.64124 -17.14441 -17.02809 -16.75663 -16.31982 -16.21377 -15.92160 -15.45063 -15.34214 -15.16902 -14.95135 -14.91983 -14.76001 -14.36397 -14.10377 -13.23246 -13.02019 -12.66461 -12.57145 -12.52962 -12.48800 -12.25400 -12.02977 -11.88185 -11.81969 -11.69994 -11.57023 -11.31206 -10.77621 -10.71675 -10.56704 -10.41056 -10.09211 -9.23837 -8.70589 -7.88202 -5.33322 -0.79751 -0.05103 0.66195 1.17938 1.28238 1.48534 1.49979 1.59464 1.85508 2.20560 2.50083 2.52078 2.96485 3.28780 3.35856 3.66444 3.85536 3.88699 4.01987 4.22754 4.31122 4.45630 4.64540 4.67219 4.76118 4.84100 4.97231 5.05003 5.13559 5.15001 5.29610 5.38668 5.47306 5.58560 5.65466 5.74991 5.78208 6.21285 6.39209 6.51263 6.69430 7.14865 7.15126 7.20051 7.84457 8.36493 9.18882 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.002040 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.381775 B =13721.138160 C =14085.504026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.177 3.823 11 C -0.128 4.128 12 C 0.180 3.820 13 N -0.705 5.705 14 C 0.691 3.309 15 O -0.592 6.592 16 N -0.618 5.618 17 C 0.015 3.985 18 C -0.024 4.024 19 N -0.393 5.393 20 C -0.122 4.122 21 C 0.606 3.394 22 N -0.809 5.809 23 O -0.579 6.579 24 S 0.321 5.679 25 C -0.125 4.125 26 C 0.143 3.857 27 H 0.251 0.749 28 H -0.005 1.005 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.439 0.561 35 H 0.215 0.785 36 H 0.418 0.582 37 H 0.421 0.579 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -22.169 16.324 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.359 5.359 14 C 0.390 3.610 15 O -0.471 6.471 16 N -0.268 5.268 17 C -0.209 4.209 18 C -0.187 4.187 19 N -0.110 5.110 20 C -0.394 4.394 21 C 0.389 3.611 22 N -0.374 5.374 23 O -0.459 6.459 24 S 0.571 5.429 25 C -0.165 4.165 26 C 0.017 3.983 27 H 0.060 0.940 28 H 0.013 0.987 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.281 0.719 35 H 0.232 0.768 36 H 0.252 0.748 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.400 -22.259 13.926 26.366 hybrid contribution 0.693 1.336 1.491 2.119 sum 3.093 -20.923 15.417 26.173 Atomic orbital electron populations 1.70176 1.06644 1.25938 1.55327 1.25804 0.96034 1.01501 1.01194 0.85286 0.78175 0.79569 0.77436 1.21555 1.21814 1.19316 1.19491 0.92853 0.85812 1.41070 0.91526 1.44358 1.35954 1.02170 1.50764 1.20583 0.87710 0.97854 0.88791 1.22267 1.02289 0.93219 0.98957 1.20649 0.97407 0.87561 0.86912 1.45023 1.70919 1.03095 1.16850 1.16161 0.78901 0.82324 0.83608 1.90903 1.53900 1.76926 1.25363 1.41577 1.68044 1.01147 1.16039 1.23469 1.06408 0.89501 1.01532 1.21930 1.09683 0.84371 1.02672 1.66651 1.08987 1.23799 1.11601 1.27461 1.15763 1.00409 0.95778 1.16709 0.76456 0.83245 0.84734 1.43335 1.69041 1.07600 1.17411 1.90901 1.49997 1.87400 1.17591 1.85774 1.56434 0.94614 1.06128 1.22199 0.97817 0.98760 0.97741 1.20971 0.97403 0.85963 0.93950 0.94030 0.98705 0.91805 0.90149 0.90737 0.91794 0.74426 0.71875 0.76843 0.74813 0.74695 0.91228 0.92010 0.97449 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.93 11.19 21.65 0.24 -53.69 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 3 Si 0.97 43.53 29.59 68.60 2.03 45.56 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.26 -13.97 9.58 84.03 0.81 -13.16 16 8 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 9 N -0.61 -29.45 2.99 -699.07 -2.09 -31.54 16 10 C 0.18 7.98 5.30 86.36 0.46 8.44 16 11 C -0.13 -4.02 5.55 30.67 0.17 -3.85 16 12 C 0.18 5.30 2.42 45.02 0.11 5.41 16 13 N -0.71 -14.40 5.08 -457.71 -2.33 -16.72 16 14 C 0.69 15.80 8.49 179.06 1.52 17.32 16 15 O -0.59 -18.77 13.53 -3.98 -0.05 -18.83 16 16 N -0.62 -9.19 5.41 -323.43 -1.75 -10.94 16 17 C 0.01 0.27 7.06 82.86 0.58 0.85 16 18 C -0.02 -0.35 11.28 84.21 0.95 0.60 16 19 N -0.39 -7.07 10.21 -190.10 -1.94 -9.01 16 20 C -0.12 -2.70 7.43 87.11 0.65 -2.05 16 21 C 0.61 13.59 8.06 86.48 0.70 14.29 16 22 N -0.81 -10.20 8.87 -176.30 -1.56 -11.77 16 23 O -0.58 -17.50 17.77 -4.30 -0.08 -17.58 16 24 S 0.32 7.96 20.09 -56.49 -1.13 6.82 16 25 C -0.12 -4.04 5.65 30.67 0.17 -3.86 16 26 C 0.14 5.91 6.52 86.37 0.56 6.47 16 27 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 28 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.06 3.26 6.06 -2.39 -0.01 3.24 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 33 H 0.42 5.27 8.62 -92.71 -0.80 4.47 16 34 H 0.44 2.51 8.83 -92.71 -0.82 1.69 16 35 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.42 3.59 8.93 -92.71 -0.83 2.76 16 37 H 0.42 3.57 8.47 -92.71 -0.79 2.78 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.06 2.30 7.93 -2.38 -0.02 2.28 16 Total: -1.00 -75.46 357.84 -3.66 -79.12 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -2.09 Total: 10.41 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: 7.10 Total: 28.16 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -9.43 Total: -133.66 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.13 Total: -36.40 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 7.96 SS G_CDS: -1.13 Total: 6.82 kcal Total: -75.46 -3.66 -79.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467273685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.800 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds