Wall clock time and date at job start Tue Mar 31 2020 22:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48496 * 109.46873 * 239.99977 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47271 * 119.99778 * 3 2 1 7 7 C 1.37867 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00258 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47066 * 60.00261 * 9 7 2 11 11 N 1.46504 * 109.47650 * 180.02562 * 9 7 2 12 12 C 1.34773 * 120.00111 * 205.00149 * 11 9 7 13 13 O 1.21585 * 120.00055 * 0.02562 * 12 11 9 14 14 N 1.34779 * 120.00093 * 179.97438 * 12 11 9 15 15 N 1.40102 * 119.99796 * 0.02562 * 14 12 11 16 16 C 1.34767 * 119.99984 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00373 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00220 * 179.97438 * 16 15 14 19 19 C 1.53179 * 109.54556 * 299.55950 * 18 16 15 20 20 C 1.53089 * 109.16482 * 183.14795 * 19 18 16 21 21 O 1.42909 * 109.41456 * 57.60657 * 20 19 18 22 22 C 1.42901 * 114.09743 * 298.84287 * 21 20 19 23 23 C 1.53097 * 109.41496 * 61.15666 * 22 21 20 24 24 C 1.53006 * 109.47239 * 300.00370 * 9 7 2 25 25 F 1.39900 * 109.46764 * 299.99857 * 24 9 7 26 26 F 1.39895 * 109.46931 * 59.99600 * 24 9 7 27 27 F 1.39897 * 109.47129 * 179.97438 * 24 9 7 28 28 H 0.97006 * 120.00645 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99624 * 24.99831 * 11 9 7 30 30 H 0.96994 * 120.00310 * 179.97438 * 14 12 11 31 31 H 0.97008 * 120.00117 * 359.97438 * 15 14 12 32 32 H 1.09005 * 109.54212 * 59.82223 * 18 16 15 33 33 H 1.08997 * 109.51956 * 303.05544 * 19 18 16 34 34 H 1.09007 * 109.52289 * 63.24142 * 19 18 16 35 35 H 1.09007 * 109.48342 * 297.62840 * 20 19 18 36 36 H 1.08998 * 109.48425 * 177.58909 * 20 19 18 37 37 H 1.08993 * 109.48058 * 301.17140 * 22 21 20 38 38 H 1.09001 * 109.48569 * 181.14150 * 22 21 20 39 39 H 1.09000 * 109.51829 * 182.48145 * 23 22 21 40 40 H 1.09001 * 109.52159 * 62.29355 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6241 -2.5575 -0.8880 11 7 2.2031 -3.6126 0.0027 12 6 1.8370 -4.8127 -0.4895 13 8 0.7168 -4.9710 -0.9348 14 7 2.7130 -5.8369 -0.4891 15 7 4.0040 -5.6543 0.0236 16 6 4.8798 -6.6786 0.0245 17 8 4.5506 -7.7585 -0.4188 18 6 6.2687 -6.4821 0.5754 19 6 6.9885 -5.3931 -0.2261 20 6 8.4235 -5.2556 0.2892 21 8 9.0897 -6.5153 0.1815 22 6 8.4885 -7.5607 0.9481 23 6 7.0560 -7.7909 0.4592 24 6 0.3719 -2.5793 1.2513 25 9 1.1766 -2.5044 2.3933 26 9 -0.5372 -1.5160 1.2509 27 9 -0.3280 -3.7907 1.2521 28 1 -0.4851 0.8400 -0.0004 29 1 3.0970 -3.4861 0.3576 30 1 2.4494 -6.7007 -0.8430 31 1 4.2675 -4.7906 0.3779 32 1 6.2070 -6.1854 1.6225 33 1 7.0050 -5.6679 -1.2807 34 1 6.4651 -4.4448 -0.1039 35 1 8.4065 -4.9415 1.3329 36 1 8.9537 -4.5119 -0.3057 37 1 8.4723 -7.2768 2.0002 38 1 9.0653 -8.4777 0.8278 39 1 6.5810 -8.5574 1.0715 40 1 7.0738 -8.1140 -0.5816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467312224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:54 Heat of formation + Delta-G solvation = -214.923402 kcal Electronic energy + Delta-G solvation = -30899.139540 eV Core-core repulsion = 25915.220141 eV Total energy + Delta-G solvation = -4983.919399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.42820 -46.08308 -45.69142 -40.78291 -39.61717 -38.61840 -35.63612 -34.88787 -34.15320 -32.63073 -31.57026 -30.68199 -28.29218 -26.13013 -24.67915 -23.90894 -22.27794 -21.96950 -20.48500 -20.32348 -19.19649 -17.87794 -17.23177 -16.89856 -16.72447 -16.62158 -16.35828 -16.20600 -15.58131 -15.39987 -15.16443 -14.96960 -14.72470 -14.58619 -14.16149 -13.90461 -13.58464 -13.32674 -12.99890 -12.75900 -12.62943 -12.47775 -12.36667 -12.07284 -11.93487 -11.90246 -11.70923 -11.42307 -11.24967 -11.14776 -10.95718 -10.89108 -10.85531 -10.55458 -10.35636 -10.02661 -9.81302 -9.74787 -8.84647 -8.59112 -8.17597 -6.33090 -4.58717 1.87121 2.27590 3.12714 3.17184 3.19659 3.35611 3.48802 3.53085 4.02749 4.11735 4.21542 4.34257 4.48110 4.57708 4.76165 4.84078 4.84463 5.04341 5.08735 5.14373 5.21825 5.33506 5.40844 5.62272 5.70413 5.72179 5.77476 5.89832 6.09199 6.41462 6.50454 6.82470 6.88717 7.06459 7.34102 7.37689 7.52120 7.83250 8.34824 8.46718 8.83754 9.09833 10.58417 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.003350 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.120811 B = 8355.453130 C = 9708.700983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.067 3.933 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.261 3.739 10 H 0.089 0.911 11 N -0.723 5.723 12 C 0.707 3.293 13 O -0.561 6.561 14 N -0.540 5.540 15 N -0.523 5.523 16 C 0.519 3.481 17 O -0.536 6.536 18 C -0.100 4.100 19 C -0.153 4.153 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.061 3.939 23 C -0.135 4.135 24 C 0.415 3.585 25 F -0.210 7.210 26 F -0.136 7.136 27 F -0.216 7.216 28 H 0.270 0.730 29 H 0.388 0.612 30 H 0.438 0.562 31 H 0.421 0.579 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.329 -8.304 3.136 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.593 4.593 8 H 0.095 0.905 9 C 0.155 3.845 10 H 0.106 0.894 11 N -0.377 5.377 12 C 0.406 3.594 13 O -0.433 6.433 14 N -0.298 5.298 15 N -0.274 5.274 16 C 0.305 3.695 17 O -0.411 6.411 18 C -0.122 4.122 19 C -0.191 4.191 20 C -0.014 4.014 21 O -0.301 6.301 22 C -0.016 4.016 23 C -0.173 4.173 24 C 0.359 3.641 25 F -0.192 7.192 26 F -0.117 7.117 27 F -0.198 7.198 28 H 0.081 0.919 29 H 0.222 0.778 30 H 0.283 0.717 31 H 0.263 0.737 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.147 -8.891 2.432 16.885 hybrid contribution 0.286 1.035 0.756 1.313 sum 14.433 -7.857 3.188 16.739 Atomic orbital electron populations 1.70380 1.05885 1.27697 1.43024 1.25068 0.95166 1.00126 0.93930 0.86249 0.79346 0.81233 0.78891 1.19746 1.20801 1.19801 1.20781 0.93680 0.87958 1.56856 0.90505 1.19706 0.88169 0.84694 0.91912 0.89356 1.45316 1.17265 1.09813 1.65321 1.15910 0.83465 0.80329 0.79685 1.91036 1.17814 1.81327 1.53134 1.44737 1.01730 1.15450 1.67895 1.44956 1.04264 1.15244 1.62914 1.20746 0.86081 0.83347 0.79353 1.90732 1.78479 1.25124 1.46780 1.21342 0.90531 0.98732 1.01631 1.22293 0.97116 0.98387 1.01309 1.22590 0.91754 0.86166 1.00911 1.87963 1.53240 1.18840 1.70071 1.22635 0.93025 0.91379 0.94573 1.22044 0.95120 0.95793 1.04381 1.23151 0.80961 0.72908 0.87089 1.92985 1.74395 1.96189 1.55602 1.93408 1.68335 1.53756 1.96179 1.93081 1.81432 1.48335 1.96958 0.91886 0.77763 0.71698 0.73728 0.87663 0.89913 0.89769 0.92597 0.88181 0.92891 0.88380 0.89869 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.07 9.50 55.43 0.53 -21.54 16 2 C 0.07 1.65 5.20 -17.82 -0.09 1.55 16 3 Si 0.92 19.04 29.54 -169.99 -5.02 14.01 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.56 -13.27 8.46 -34.45 -0.29 -13.56 16 8 H 0.08 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.26 6.15 2.21 -69.08 -0.15 6.00 16 10 H 0.09 2.35 7.58 -51.93 -0.39 1.96 16 11 N -0.72 -13.72 4.95 -59.81 -0.30 -14.02 16 12 C 0.71 13.64 8.21 -86.92 -0.71 12.93 16 13 O -0.56 -13.10 15.75 5.29 0.08 -13.02 16 14 N -0.54 -8.30 6.26 27.63 0.17 -8.13 16 15 N -0.52 -6.16 6.17 31.22 0.19 -5.97 16 16 C 0.52 5.95 7.27 -10.99 -0.08 5.87 16 17 O -0.54 -8.00 15.81 5.56 0.09 -7.92 16 18 C -0.10 -0.78 2.61 -91.59 -0.24 -1.02 16 19 C -0.15 -1.06 5.30 -26.59 -0.14 -1.20 16 20 C 0.06 0.41 6.84 37.20 0.25 0.67 16 21 O -0.38 -3.32 10.77 -35.23 -0.38 -3.70 16 22 C 0.06 0.41 6.84 37.21 0.25 0.67 16 23 C -0.14 -1.08 4.73 -26.59 -0.13 -1.21 16 24 C 0.42 10.25 2.81 37.16 0.10 10.36 16 25 F -0.21 -4.92 16.94 2.25 0.04 -4.88 16 26 F -0.14 -3.63 12.91 2.25 0.03 -3.61 16 27 F -0.22 -5.38 15.68 2.25 0.04 -5.34 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.39 6.02 6.46 -40.82 -0.26 5.76 16 30 H 0.44 6.74 8.10 -182.60 -1.48 5.26 16 31 H 0.42 4.03 6.22 -182.59 -1.14 2.90 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 35 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -31.79 343.20 -7.17 -38.96 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.59 Total: 8.94 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: -1.22 Total: 21.05 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.60 Total: -49.66 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.21 Total: -24.64 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 0.10 Total: -13.83 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.79 -7.17 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467312224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.964 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds