Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00404 * 2 1 4 4 H 1.48507 * 109.47142 * 95.35475 * 3 2 1 5 5 H 1.48505 * 109.47446 * 215.35055 * 3 2 1 6 6 H 1.48496 * 109.47010 * 335.35909 * 3 2 1 7 7 C 1.37882 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99767 * 354.96080 * 7 2 1 9 9 C 1.50691 * 120.00565 * 174.95992 * 7 2 1 10 10 H 1.08998 * 109.46931 * 34.68855 * 9 7 2 11 11 N 1.46498 * 109.47403 * 274.68986 * 9 7 2 12 12 C 1.34771 * 120.00419 * 154.99442 * 11 9 7 13 13 O 1.21592 * 119.99926 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00344 * 180.02562 * 12 11 9 15 15 N 1.40096 * 119.99723 * 359.97438 * 14 12 11 16 16 C 1.34780 * 120.00106 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99719 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00258 * 180.02562 * 16 15 14 19 19 C 1.53180 * 109.54211 * 299.55285 * 18 16 15 20 20 C 1.53088 * 109.16564 * 183.15242 * 19 18 16 21 21 O 1.42899 * 109.41573 * 57.61282 * 20 19 18 22 22 C 1.42906 * 114.09557 * 298.84600 * 21 20 19 23 23 C 1.53088 * 109.42114 * 61.15654 * 22 21 20 24 24 C 1.52995 * 109.47552 * 154.68907 * 9 7 2 25 25 F 1.39900 * 109.47134 * 55.85785 * 24 9 7 26 26 F 1.39898 * 109.47487 * 175.85993 * 24 9 7 27 27 F 1.39907 * 109.47117 * 295.86078 * 24 9 7 28 28 H 0.96999 * 119.99483 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99705 * 335.00205 * 11 9 7 30 30 H 0.96998 * 120.00148 * 180.02562 * 14 12 11 31 31 H 0.97005 * 120.00529 * 0.02562 * 15 14 12 32 32 H 1.08996 * 109.54734 * 59.81891 * 18 16 15 33 33 H 1.09002 * 109.52580 * 303.06526 * 19 18 16 34 34 H 1.09005 * 109.51775 * 63.25153 * 19 18 16 35 35 H 1.09001 * 109.48388 * 297.63020 * 20 19 18 36 36 H 1.08998 * 109.48432 * 177.59574 * 20 19 18 37 37 H 1.09001 * 109.47916 * 301.17201 * 22 21 20 38 38 H 1.09002 * 109.48926 * 181.14808 * 22 21 20 39 39 H 1.08990 * 109.52572 * 182.49001 * 23 22 21 40 40 H 1.08994 * 109.52239 * 62.29120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6099 1.9810 1.3940 5 1 3.4857 1.4753 -0.8101 6 1 1.3947 2.6826 -0.5837 7 6 2.0046 -1.1941 -0.0005 8 1 1.4676 -2.1277 0.0812 9 6 3.5071 -1.1967 -0.1152 10 1 3.9125 -0.3277 0.4030 11 7 3.8892 -1.1446 -1.5285 12 6 5.0883 -0.6428 -1.8844 13 8 5.8533 -0.2338 -1.0324 14 7 5.4396 -0.5944 -3.1847 15 7 4.5584 -1.0661 -4.1663 16 6 4.9094 -1.0173 -5.4667 17 8 5.9884 -0.5653 -5.7870 18 6 3.9613 -1.5242 -6.5227 19 6 3.6735 -3.0094 -6.2826 20 6 2.7733 -3.5346 -7.4039 21 8 3.4104 -3.3194 -8.6648 22 6 3.6614 -1.9449 -8.9645 23 6 4.5974 -1.3558 -7.9060 24 6 4.0647 -2.4734 0.5170 25 9 3.4728 -3.5889 -0.0851 26 9 5.4500 -2.5213 0.3274 27 9 3.7812 -2.4777 1.8871 28 1 -0.4849 0.8401 0.0004 29 1 3.2790 -1.4711 -2.2082 30 1 6.3028 -0.2336 -3.4408 31 1 3.6952 -1.4273 -3.9102 32 1 3.0302 -0.9593 -6.4783 33 1 4.6108 -3.5658 -6.2772 34 1 3.1702 -3.1325 -5.3236 35 1 1.8205 -3.0055 -7.3831 36 1 2.6000 -4.6013 -7.2616 37 1 2.7203 -1.3949 -8.9641 38 1 4.1279 -1.8661 -9.9465 39 1 4.7548 -0.2964 -8.1079 40 1 5.5533 -1.8788 -7.9333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467312227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = -238.987445 kcal Electronic energy + Delta-G solvation = -31024.932971 eV Core-core repulsion = 26039.970078 eV Total energy + Delta-G solvation = -4984.962894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.15397 -46.66316 -46.64609 -40.75016 -39.61571 -38.60229 -35.62997 -35.02358 -34.11456 -32.64113 -31.54336 -30.71717 -28.91919 -26.09519 -25.09250 -23.87034 -22.17299 -21.92851 -20.53715 -20.31924 -19.20067 -18.02003 -17.82076 -17.56487 -16.95933 -16.62003 -16.49353 -16.31515 -16.01563 -15.39205 -15.14201 -15.04990 -14.63484 -14.52513 -14.20082 -13.94753 -13.65581 -13.54883 -13.42471 -13.16457 -13.07623 -12.84556 -12.80433 -12.71985 -12.70305 -11.98227 -11.87610 -11.67061 -11.37717 -11.18631 -11.09489 -10.82384 -10.80283 -10.40698 -10.28646 -10.08133 -9.93656 -9.74804 -9.11118 -8.74285 -8.17752 -6.66576 -4.83056 1.90237 2.30670 3.00904 3.12353 3.21694 3.31628 3.42536 3.56674 3.86102 4.00179 4.06273 4.25372 4.38440 4.61568 4.71967 4.81036 4.88329 4.93529 5.07976 5.10708 5.13760 5.18276 5.25961 5.37329 5.38404 5.44811 5.66328 5.73977 5.92979 6.10753 6.46465 6.63441 6.86266 6.87834 7.00293 7.36619 7.68959 7.88309 8.39247 8.45735 8.83262 8.88760 10.40839 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.003598 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.680387 B = 7780.872302 C = 8056.287924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.102 3.898 3 Si 0.869 3.131 4 H -0.265 1.265 5 H -0.253 1.253 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.097 0.903 9 C 0.219 3.781 10 H 0.090 0.910 11 N -0.726 5.726 12 C 0.701 3.299 13 O -0.572 6.572 14 N -0.540 5.540 15 N -0.523 5.523 16 C 0.519 3.481 17 O -0.538 6.538 18 C -0.100 4.100 19 C -0.153 4.153 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.061 3.939 23 C -0.135 4.135 24 C 0.440 3.560 25 F -0.190 7.190 26 F -0.194 7.194 27 F -0.183 7.183 28 H 0.277 0.723 29 H 0.389 0.611 30 H 0.435 0.565 31 H 0.423 0.577 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -3.783 -14.135 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.109 4.109 3 Si 0.693 3.307 4 H -0.190 1.190 5 H -0.177 1.177 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.115 0.885 9 C 0.116 3.884 10 H 0.108 0.892 11 N -0.384 5.384 12 C 0.401 3.599 13 O -0.445 6.445 14 N -0.298 5.298 15 N -0.273 5.273 16 C 0.305 3.695 17 O -0.413 6.413 18 C -0.123 4.123 19 C -0.191 4.191 20 C -0.014 4.014 21 O -0.301 6.301 22 C -0.016 4.016 23 C -0.173 4.173 24 C 0.384 3.616 25 F -0.172 7.172 26 F -0.175 7.175 27 F -0.165 7.165 28 H 0.087 0.913 29 H 0.225 0.775 30 H 0.280 0.720 31 H 0.264 0.736 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.657 -3.274 -13.694 14.548 hybrid contribution -0.019 0.766 0.118 0.776 sum 3.638 -2.508 -13.576 14.277 Atomic orbital electron populations 1.69859 1.06439 1.28584 1.43784 1.24981 0.94788 0.99352 0.91819 0.86926 0.80838 0.82562 0.80332 1.19004 1.17683 1.20651 1.20791 0.86246 0.96560 1.54021 0.88548 1.19953 0.97923 0.90565 0.79951 0.89210 1.47036 1.15643 1.65471 1.10216 1.16299 0.83557 0.79456 0.80590 1.90984 1.52603 1.55014 1.45923 1.44807 1.17540 1.68810 0.98677 1.44971 1.17109 1.63706 1.01558 1.20756 0.88444 0.78978 0.81312 1.90727 1.23339 1.46235 1.80975 1.21346 0.99049 0.97953 0.93930 1.22291 1.02441 0.93776 1.00580 1.22589 0.94293 1.01976 0.82565 1.87957 1.80311 1.25246 1.36616 1.22633 0.98123 0.82457 0.98403 1.22039 1.00133 1.03021 0.92100 1.21549 0.74937 0.88142 0.76938 1.93076 1.83959 1.56645 1.83483 1.93151 1.32412 1.96980 1.94966 1.93111 1.93419 1.96875 1.33069 0.91310 0.77465 0.71957 0.73553 0.87581 0.89986 0.89725 0.92518 0.88174 0.92862 0.88407 0.89907 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.09 13.96 55.43 0.77 -21.31 16 2 C 0.10 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 19.25 26.91 -169.99 -4.58 14.68 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.25 -5.70 6.82 56.52 0.39 -5.32 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.54 -12.85 8.68 -34.44 -0.30 -13.15 16 8 H 0.10 2.49 7.69 -52.48 -0.40 2.08 16 9 C 0.22 4.78 1.45 -69.09 -0.10 4.68 16 10 H 0.09 2.10 5.34 -51.93 -0.28 1.83 16 11 N -0.73 -13.73 4.89 -59.82 -0.29 -14.03 16 12 C 0.70 13.55 7.96 -86.92 -0.69 12.86 16 13 O -0.57 -13.01 15.78 5.28 0.08 -12.93 16 14 N -0.54 -8.60 6.26 27.63 0.17 -8.43 16 15 N -0.52 -6.57 6.17 31.22 0.19 -6.37 16 16 C 0.52 6.30 7.27 -10.99 -0.08 6.22 16 17 O -0.54 -8.30 15.81 5.55 0.09 -8.21 16 18 C -0.10 -0.86 2.61 -91.58 -0.24 -1.10 16 19 C -0.15 -1.17 5.30 -26.59 -0.14 -1.31 16 20 C 0.06 0.45 6.84 37.20 0.25 0.71 16 21 O -0.38 -3.52 10.77 -35.23 -0.38 -3.90 16 22 C 0.06 0.44 6.84 37.20 0.25 0.70 16 23 C -0.13 -1.15 4.74 -26.59 -0.13 -1.28 16 24 C 0.44 9.37 2.83 37.16 0.11 9.48 16 25 F -0.19 -3.87 16.65 2.25 0.04 -3.83 16 26 F -0.19 -4.15 15.56 2.25 0.04 -4.11 16 27 F -0.18 -3.96 17.12 2.25 0.04 -3.93 16 28 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.39 6.31 6.51 -40.82 -0.27 6.05 16 30 H 0.44 6.90 8.10 -182.60 -1.48 5.42 16 31 H 0.42 4.48 6.22 -182.60 -1.14 3.34 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.55 7.70 -51.93 -0.40 0.15 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.83 8.02 -51.93 -0.42 0.42 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -30.58 345.78 -6.26 -36.84 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.49 Total: 10.12 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: -1.16 Total: 20.20 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.85 Total: -50.14 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.21 Total: -25.04 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 0.11 Total: -11.87 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.58 Total: 14.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.58 -6.26 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467312227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.146 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds