Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00404 * 2 1 4 4 H 1.48507 * 109.47142 * 95.35475 * 3 2 1 5 5 H 1.48505 * 109.47446 * 215.35055 * 3 2 1 6 6 H 1.48496 * 109.47010 * 335.35909 * 3 2 1 7 7 C 1.37882 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99767 * 354.96080 * 7 2 1 9 9 C 1.50691 * 120.00565 * 174.95992 * 7 2 1 10 10 H 1.08998 * 109.46931 * 34.68855 * 9 7 2 11 11 N 1.46498 * 109.47403 * 274.68986 * 9 7 2 12 12 C 1.34771 * 120.00419 * 154.99442 * 11 9 7 13 13 O 1.21592 * 119.99926 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00344 * 180.02562 * 12 11 9 15 15 N 1.40096 * 119.99723 * 359.97438 * 14 12 11 16 16 C 1.34780 * 120.00106 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99719 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00258 * 180.02562 * 16 15 14 19 19 C 1.53180 * 109.54211 * 299.55285 * 18 16 15 20 20 C 1.53088 * 109.16564 * 183.15242 * 19 18 16 21 21 O 1.42899 * 109.41573 * 57.61282 * 20 19 18 22 22 C 1.42906 * 114.09557 * 298.84600 * 21 20 19 23 23 C 1.53088 * 109.42114 * 61.15654 * 22 21 20 24 24 C 1.52995 * 109.47552 * 154.68907 * 9 7 2 25 25 F 1.39900 * 109.47134 * 55.85785 * 24 9 7 26 26 F 1.39898 * 109.47487 * 175.85993 * 24 9 7 27 27 F 1.39907 * 109.47117 * 295.86078 * 24 9 7 28 28 H 0.96999 * 119.99483 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99705 * 335.00205 * 11 9 7 30 30 H 0.96998 * 120.00148 * 180.02562 * 14 12 11 31 31 H 0.97005 * 120.00529 * 0.02562 * 15 14 12 32 32 H 1.08996 * 109.54734 * 59.81891 * 18 16 15 33 33 H 1.09002 * 109.52580 * 303.06526 * 19 18 16 34 34 H 1.09005 * 109.51775 * 63.25153 * 19 18 16 35 35 H 1.09001 * 109.48388 * 297.63020 * 20 19 18 36 36 H 1.08998 * 109.48432 * 177.59574 * 20 19 18 37 37 H 1.09001 * 109.47916 * 301.17201 * 22 21 20 38 38 H 1.09002 * 109.48926 * 181.14808 * 22 21 20 39 39 H 1.08990 * 109.52572 * 182.49001 * 23 22 21 40 40 H 1.08994 * 109.52239 * 62.29120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6099 1.9810 1.3940 5 1 3.4857 1.4753 -0.8101 6 1 1.3947 2.6826 -0.5837 7 6 2.0046 -1.1941 -0.0005 8 1 1.4676 -2.1277 0.0812 9 6 3.5071 -1.1967 -0.1152 10 1 3.9125 -0.3277 0.4030 11 7 3.8892 -1.1446 -1.5285 12 6 5.0883 -0.6428 -1.8844 13 8 5.8533 -0.2338 -1.0324 14 7 5.4396 -0.5944 -3.1847 15 7 4.5584 -1.0661 -4.1663 16 6 4.9094 -1.0173 -5.4667 17 8 5.9884 -0.5653 -5.7870 18 6 3.9613 -1.5242 -6.5227 19 6 3.6735 -3.0094 -6.2826 20 6 2.7733 -3.5346 -7.4039 21 8 3.4104 -3.3194 -8.6648 22 6 3.6614 -1.9449 -8.9645 23 6 4.5974 -1.3558 -7.9060 24 6 4.0647 -2.4734 0.5170 25 9 3.4728 -3.5889 -0.0851 26 9 5.4500 -2.5213 0.3274 27 9 3.7812 -2.4777 1.8871 28 1 -0.4849 0.8401 0.0004 29 1 3.2790 -1.4711 -2.2082 30 1 6.3028 -0.2336 -3.4408 31 1 3.6952 -1.4273 -3.9102 32 1 3.0302 -0.9593 -6.4783 33 1 4.6108 -3.5658 -6.2772 34 1 3.1702 -3.1325 -5.3236 35 1 1.8205 -3.0055 -7.3831 36 1 2.6000 -4.6013 -7.2616 37 1 2.7203 -1.3949 -8.9641 38 1 4.1279 -1.8661 -9.9465 39 1 4.7548 -0.2964 -8.1079 40 1 5.5533 -1.8788 -7.9333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467312227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = -262.182038 kcal Electronic energy + Delta-G solvation = -31025.938764 eV Core-core repulsion = 26039.970078 eV Total energy + Delta-G solvation = -4985.968687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.87573 -48.38747 -48.35931 -41.84442 -40.85255 -39.51890 -36.92062 -36.74743 -34.88433 -34.46215 -32.35169 -31.78069 -30.55632 -26.92221 -26.84726 -24.48065 -23.78358 -22.85613 -22.09893 -21.24870 -20.59110 -19.60383 -19.33398 -18.96007 -18.53959 -18.38418 -17.57783 -17.07532 -16.94010 -16.62929 -16.47541 -16.23520 -15.91140 -15.69343 -15.42947 -15.24391 -15.18053 -14.90224 -14.80362 -14.62294 -14.56236 -14.51098 -14.49005 -14.28168 -13.72538 -13.29481 -13.08272 -12.69112 -12.57572 -12.45941 -12.28480 -12.06696 -11.87560 -11.81940 -11.69119 -11.50754 -11.09896 -11.00276 -10.48913 -10.37623 -9.45702 -8.56129 -6.75116 0.71618 1.26024 1.28744 1.35430 1.44717 1.75765 1.87888 2.15940 2.19825 2.90565 3.00817 3.14904 3.25912 3.35011 3.49610 3.60709 3.73260 3.93279 4.02851 4.22326 4.33395 4.37852 4.51499 4.62538 4.69906 4.81286 4.86757 4.89231 5.08580 5.11896 5.25295 5.27867 5.28321 5.53362 5.90408 6.19456 6.31147 6.45122 6.60301 6.98861 7.14595 7.34126 8.54997 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.003598 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.680387 B = 7780.872302 C = 8056.287924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.258 1.258 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.227 3.773 10 H 0.077 0.923 11 N -0.719 5.719 12 C 0.703 3.297 13 O -0.607 6.607 14 N -0.534 5.534 15 N -0.516 5.516 16 C 0.522 3.478 17 O -0.571 6.571 18 C -0.093 4.093 19 C -0.150 4.150 20 C 0.060 3.940 21 O -0.404 6.404 22 C 0.062 3.938 23 C -0.133 4.133 24 C 0.442 3.558 25 F -0.183 7.183 26 F -0.193 7.193 27 F -0.186 7.186 28 H 0.281 0.719 29 H 0.404 0.596 30 H 0.438 0.562 31 H 0.433 0.567 32 H 0.134 0.866 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 -3.732 -15.419 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.182 1.182 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.092 0.908 9 C 0.122 3.878 10 H 0.095 0.905 11 N -0.377 5.377 12 C 0.402 3.598 13 O -0.484 6.484 14 N -0.289 5.289 15 N -0.269 5.269 16 C 0.310 3.690 17 O -0.448 6.448 18 C -0.116 4.116 19 C -0.189 4.189 20 C -0.016 4.016 21 O -0.323 6.323 22 C -0.015 4.015 23 C -0.171 4.171 24 C 0.386 3.614 25 F -0.165 7.165 26 F -0.174 7.174 27 F -0.167 7.167 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.283 0.717 31 H 0.277 0.723 32 H 0.152 0.848 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.082 -3.243 -15.025 15.677 hybrid contribution 0.207 0.679 0.452 0.842 sum 3.289 -2.563 -14.573 15.158 Atomic orbital electron populations 1.69909 1.07458 1.29424 1.45470 1.25402 0.95093 1.01313 0.91655 0.86196 0.79632 0.80304 0.79824 1.19509 1.18246 1.19867 1.20686 0.87005 0.95630 1.54030 0.90753 1.19661 0.96632 0.90451 0.81016 0.90495 1.46443 1.16095 1.65683 1.09512 1.16185 0.83076 0.79203 0.81286 1.90961 1.53506 1.56376 1.47534 1.44493 1.18051 1.67918 0.98474 1.45129 1.16984 1.63785 1.00986 1.21516 0.88444 0.77803 0.81266 1.90720 1.25016 1.47657 1.81375 1.21450 0.98995 0.98849 0.92288 1.22303 1.02140 0.92661 1.01749 1.22726 0.94561 1.02832 0.81522 1.87936 1.80628 1.26241 1.37500 1.22719 0.98652 0.81854 0.98227 1.22018 0.99604 1.02846 0.92624 1.21448 0.74956 0.88182 0.76828 1.93088 1.83842 1.56230 1.83331 1.93155 1.32351 1.96981 1.94953 1.93106 1.93438 1.96896 1.33305 0.90896 0.75731 0.71686 0.72319 0.84849 0.91472 0.88218 0.90823 0.87355 0.91040 0.87521 0.89907 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.43 13.96 21.45 0.30 -45.13 16 2 C 0.07 3.53 5.47 84.66 0.46 4.00 16 3 Si 0.92 39.03 26.91 68.60 1.85 40.87 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.26 -11.16 6.82 99.48 0.68 -10.49 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -25.20 8.68 25.60 0.22 -24.98 16 8 H 0.07 3.82 7.69 -2.91 -0.02 3.80 16 9 C 0.23 9.70 1.45 44.24 0.06 9.76 16 10 H 0.08 3.54 5.34 -2.39 -0.01 3.53 16 11 N -0.72 -26.15 4.89 -461.44 -2.26 -28.41 16 12 C 0.70 26.28 7.96 179.06 1.43 27.70 16 13 O -0.61 -27.18 15.78 -4.01 -0.06 -27.25 16 14 N -0.53 -16.27 6.26 -184.74 -1.16 -17.43 16 15 N -0.52 -11.96 6.17 -173.52 -1.07 -13.03 16 16 C 0.52 11.79 7.27 87.66 0.64 12.42 16 17 O -0.57 -17.13 15.81 -3.06 -0.05 -17.18 16 18 C -0.09 -1.39 2.61 -11.42 -0.03 -1.42 16 19 C -0.15 -1.96 5.30 30.68 0.16 -1.79 16 20 C 0.06 0.71 6.84 72.01 0.49 1.20 16 21 O -0.40 -6.60 10.77 -148.98 -1.60 -8.20 16 22 C 0.06 0.77 6.84 72.01 0.49 1.26 16 23 C -0.13 -2.06 4.74 30.69 0.15 -1.92 16 24 C 0.44 18.38 2.83 71.98 0.20 18.58 16 25 F -0.18 -7.23 16.65 44.97 0.75 -6.48 16 26 F -0.19 -8.07 15.56 44.97 0.70 -7.37 16 27 F -0.19 -7.91 17.12 44.97 0.77 -7.14 16 28 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 29 H 0.40 12.31 6.51 -92.70 -0.60 11.71 16 30 H 0.44 13.47 8.10 -213.32 -1.73 11.74 16 31 H 0.43 8.06 6.22 -213.32 -1.33 6.74 16 32 H 0.13 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.99 7.70 -2.38 -0.02 0.97 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.22 8.02 -2.39 -0.02 1.20 16 Total: -1.00 -64.41 345.78 -0.10 -64.51 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -2.55 Total: 27.40 kcal Atomic # 6 Polarization: 40.55 SS G_CDS: 4.28 Total: 44.82 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.18 Total: -104.00 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.72 Total: -52.63 kcal Atomic # 9 Polarization: -23.20 SS G_CDS: 2.22 Total: -20.99 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.85 Total: 40.87 kcal Total: -64.41 -0.10 -64.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467312227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.669 kcal (2) G-P(sol) polarization free energy of solvation -64.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds