Wall clock time and date at job start Tue Mar 31 2020 22:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86794 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47223 * 270.00246 * 3 2 1 5 5 H 1.48505 * 109.47172 * 30.00027 * 3 2 1 6 6 H 1.48500 * 109.47235 * 150.00071 * 3 2 1 7 7 C 1.38949 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00306 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00087 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99971 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00043 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99905 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47094 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99629 * 180.02562 * 13 12 10 15 15 O 1.21587 * 120.00411 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99687 * 179.97438 * 14 13 12 17 17 C 1.47484 * 127.03376 * 0.02562 * 16 14 13 18 18 C 1.54007 * 107.08285 * 154.51684 * 17 16 14 19 19 C 1.54611 * 105.04344 * 1.30849 * 18 17 16 20 20 C 1.53006 * 110.74064 * 263.50997 * 19 18 17 21 21 O 1.42897 * 109.47292 * 180.02562 * 20 19 18 22 22 C 1.52998 * 110.74013 * 140.18598 * 19 18 17 23 23 F 1.39906 * 109.47211 * 59.99902 * 22 19 18 24 24 F 1.39899 * 109.47555 * 179.97438 * 22 19 18 25 25 F 1.39900 * 109.47082 * 299.99982 * 22 19 18 26 26 C 1.48118 * 127.03167 * 179.97438 * 16 14 13 27 27 H 0.97006 * 119.99876 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99932 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47420 * 59.99647 * 12 10 9 30 30 H 1.09003 * 109.47180 * 300.00051 * 12 10 9 31 31 H 0.96991 * 120.00061 * 359.97438 * 13 12 10 32 32 H 1.09000 * 109.91322 * 35.15492 * 17 16 14 33 33 H 1.08997 * 109.91328 * 273.88125 * 17 16 14 34 34 H 1.09004 * 110.32250 * 120.19906 * 18 17 16 35 35 H 1.08993 * 110.32463 * 242.41201 * 18 17 16 36 36 H 1.09001 * 109.47036 * 300.00255 * 20 19 18 37 37 H 1.09002 * 109.46858 * 59.99628 * 20 19 18 38 38 H 0.96695 * 113.99745 * 179.97438 * 21 20 19 39 39 H 1.08996 * 110.66106 * 100.88924 * 26 16 14 40 40 H 1.08999 * 110.66365 * 337.76922 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3707 0.0000 13 7 6.0489 -3.7520 -0.0006 14 6 7.3740 -3.9982 -0.0002 15 8 8.1641 -3.0741 0.0002 16 7 7.8232 -5.2689 -0.0003 17 6 7.0092 -6.4988 -0.0013 18 6 7.8682 -7.6093 -0.6343 19 6 9.2220 -6.9353 -0.9560 20 6 9.2671 -6.4797 -2.4160 21 8 10.5277 -5.8623 -2.6836 22 6 10.3848 -7.8798 -0.6455 23 9 10.2628 -9.0396 -1.4184 24 9 11.5946 -7.2448 -0.9461 25 9 10.3604 -8.2191 0.7116 26 6 9.2353 -5.7159 -0.0004 27 1 -0.4850 0.8401 0.0004 28 1 3.8648 -0.3634 0.0004 29 1 5.9240 -1.8569 0.8899 30 1 5.9240 -1.8569 -0.8900 31 1 5.4186 -4.4892 -0.0006 32 1 6.1061 -6.3458 -0.5920 33 1 6.7457 -6.7704 1.0209 34 1 8.0108 -8.4269 0.0723 35 1 7.4006 -7.9750 -1.5484 36 1 9.1393 -7.3424 -3.0699 37 1 8.4655 -5.7640 -2.5981 38 1 10.6268 -5.5487 -3.5929 39 1 9.5439 -6.0156 1.0011 40 1 9.8869 -4.9319 -0.3863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470097008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:06 Heat of formation + Delta-G solvation = -250.396414 kcal Electronic energy + Delta-G solvation = -30300.175341 eV Core-core repulsion = 25314.717717 eV Total energy + Delta-G solvation = -4985.457624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.38048 -47.91712 -47.74695 -40.61258 -38.97676 -38.13612 -36.58086 -34.58313 -33.83498 -32.81972 -31.83113 -29.96287 -28.22705 -26.35720 -25.87618 -24.25274 -23.40827 -20.72692 -20.10999 -19.72003 -19.01461 -18.71717 -18.44670 -18.30282 -17.60457 -17.52203 -16.13144 -15.95971 -15.58830 -15.30207 -15.07441 -14.94703 -14.69465 -14.64537 -14.40176 -14.29815 -14.21646 -14.03482 -13.92251 -13.88466 -13.51353 -13.20979 -13.03579 -12.82880 -12.52361 -12.25561 -12.17724 -12.00373 -11.98530 -11.79726 -11.27706 -11.26499 -10.67028 -10.46351 -10.23312 -10.09513 -9.73575 -9.16472 -8.81897 -8.72075 -8.34313 -6.44331 -3.97128 2.15691 2.56858 2.97139 3.01954 3.08586 3.10410 3.26751 3.34134 3.52193 3.55464 3.85090 3.93502 4.00828 4.15862 4.28248 4.48311 4.52226 4.63432 4.69784 4.93563 5.07177 5.10680 5.16987 5.25967 5.29836 5.42905 5.50158 5.60881 5.74042 5.79451 5.87126 6.53428 6.93497 7.16600 7.40898 7.94644 7.98493 8.39917 8.58347 8.77810 9.25945 9.58998 10.67718 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002264 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.991205 B =12365.274331 C =12712.218884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.580 6.580 12 C 0.125 3.875 13 N -0.721 5.721 14 C 0.729 3.271 15 O -0.588 6.588 16 N -0.639 5.639 17 C 0.099 3.901 18 C -0.120 4.120 19 C -0.125 4.125 20 C 0.091 3.909 21 O -0.561 6.561 22 C 0.470 3.530 23 F -0.182 7.182 24 F -0.163 7.163 25 F -0.182 7.182 26 C 0.142 3.858 27 H 0.276 0.724 28 H 0.375 0.625 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.408 0.592 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.387 0.613 39 H 0.083 0.917 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.235 -14.987 -3.768 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.224 3.776 11 O -0.465 6.465 12 C -0.003 4.003 13 N -0.379 5.379 14 C 0.431 3.569 15 O -0.466 6.466 16 N -0.378 5.378 17 C -0.024 4.024 18 C -0.158 4.158 19 C -0.128 4.128 20 C 0.013 3.987 21 O -0.367 6.367 22 C 0.416 3.584 23 F -0.164 7.164 24 F -0.144 7.144 25 F -0.163 7.163 26 C 0.018 3.982 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.246 0.754 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.101 0.899 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.217 -14.890 -3.124 25.302 hybrid contribution 0.222 0.893 -0.503 1.049 sum 20.440 -13.997 -3.627 25.037 Atomic orbital electron populations 1.69617 1.05730 1.27865 1.48030 1.25068 0.95537 0.98203 0.97076 0.86669 0.79939 0.83724 0.79159 1.19375 1.19965 1.19176 1.19433 0.78920 0.96794 1.48759 0.86080 1.42115 1.07710 1.06133 1.65306 1.19615 0.88005 0.84892 0.85094 1.90529 1.69225 1.30921 1.55795 1.20839 0.93475 0.82612 1.03378 1.44749 1.04907 1.09470 1.78747 1.15209 0.82696 0.81073 0.77906 1.90936 1.55239 1.41843 1.58578 1.47643 1.06974 1.03810 1.79361 1.22108 0.94853 0.83571 1.01884 1.22611 0.91785 0.98279 1.03162 1.23028 0.93999 0.96613 0.99161 1.21998 0.87571 0.97591 0.91525 1.86523 1.34676 1.80147 1.35379 1.19975 0.84431 0.79981 0.74057 1.93176 1.96088 1.51744 1.75370 1.93257 1.47030 1.81414 1.92730 1.93179 1.96667 1.92994 1.33496 1.22162 0.83811 0.94372 0.97870 0.91348 0.79198 0.89740 0.89785 0.75371 0.89708 0.90371 0.88633 0.88560 0.92132 0.91095 0.76497 0.89939 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.60 13.96 55.50 0.77 -23.82 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.70 27.74 -169.99 -4.71 13.98 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 7 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 8 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 9 N -0.58 -13.06 5.09 -10.96 -0.06 -13.12 16 10 C 0.44 9.35 7.85 -10.99 -0.09 9.26 16 11 O -0.58 -14.17 15.24 5.55 0.08 -14.09 16 12 C 0.13 2.12 6.15 -5.19 -0.03 2.09 16 13 N -0.72 -11.24 5.50 -66.41 -0.37 -11.60 16 14 C 0.73 11.18 8.54 -86.91 -0.74 10.44 16 15 O -0.59 -10.93 16.55 5.29 0.09 -10.84 16 16 N -0.64 -7.38 3.19 -175.48 -0.56 -7.94 16 17 C 0.10 0.82 6.65 -2.98 -0.02 0.80 16 18 C -0.12 -0.76 5.80 -25.36 -0.15 -0.91 16 19 C -0.13 -1.03 0.35 -152.64 -0.05 -1.08 16 20 C 0.09 0.69 5.76 37.16 0.21 0.90 16 21 O -0.56 -4.64 11.27 -35.23 -0.40 -5.04 16 22 C 0.47 4.25 2.25 37.16 0.08 4.34 16 23 F -0.18 -1.63 16.85 2.25 0.04 -1.59 16 24 F -0.16 -1.75 15.31 2.25 0.03 -1.72 16 25 F -0.18 -1.68 15.79 2.25 0.04 -1.65 16 26 C 0.14 1.47 5.82 -2.13 -0.01 1.46 16 27 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.41 6.20 6.01 -40.82 -0.25 5.95 16 32 H 0.08 0.68 7.30 -51.93 -0.38 0.30 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.52 7.41 -51.93 -0.38 0.14 16 35 H 0.10 0.46 7.86 -51.93 -0.41 0.05 16 36 H 0.06 0.36 8.05 -51.93 -0.42 -0.06 16 37 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.39 1.62 9.12 45.56 0.42 2.03 16 39 H 0.08 0.80 7.30 -51.93 -0.38 0.42 16 40 H 0.11 1.32 7.38 -51.93 -0.38 0.94 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -33.93 346.44 -4.52 -38.45 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -3.66 Total: 13.89 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: -1.04 Total: 19.85 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.21 Total: -56.48 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.22 Total: -29.97 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.11 Total: -4.95 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.93 -4.52 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470097008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.943 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds