Wall clock time and date at job start Tue Mar 31 2020 22:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86794 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47223 * 270.00246 * 3 2 1 5 5 H 1.48505 * 109.47172 * 30.00027 * 3 2 1 6 6 H 1.48500 * 109.47235 * 150.00071 * 3 2 1 7 7 C 1.38949 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00306 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00087 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99971 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00043 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99905 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47094 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99629 * 180.02562 * 13 12 10 15 15 O 1.21587 * 120.00411 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99687 * 179.97438 * 14 13 12 17 17 C 1.47484 * 127.03376 * 0.02562 * 16 14 13 18 18 C 1.54007 * 107.08285 * 154.51684 * 17 16 14 19 19 C 1.54611 * 105.04344 * 1.30849 * 18 17 16 20 20 C 1.53006 * 110.74064 * 263.50997 * 19 18 17 21 21 O 1.42897 * 109.47292 * 180.02562 * 20 19 18 22 22 C 1.52998 * 110.74013 * 140.18598 * 19 18 17 23 23 F 1.39906 * 109.47211 * 59.99902 * 22 19 18 24 24 F 1.39899 * 109.47555 * 179.97438 * 22 19 18 25 25 F 1.39900 * 109.47082 * 299.99982 * 22 19 18 26 26 C 1.48118 * 127.03167 * 179.97438 * 16 14 13 27 27 H 0.97006 * 119.99876 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99932 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47420 * 59.99647 * 12 10 9 30 30 H 1.09003 * 109.47180 * 300.00051 * 12 10 9 31 31 H 0.96991 * 120.00061 * 359.97438 * 13 12 10 32 32 H 1.09000 * 109.91322 * 35.15492 * 17 16 14 33 33 H 1.08997 * 109.91328 * 273.88125 * 17 16 14 34 34 H 1.09004 * 110.32250 * 120.19906 * 18 17 16 35 35 H 1.08993 * 110.32463 * 242.41201 * 18 17 16 36 36 H 1.09001 * 109.47036 * 300.00255 * 20 19 18 37 37 H 1.09002 * 109.46858 * 59.99628 * 20 19 18 38 38 H 0.96695 * 113.99745 * 179.97438 * 21 20 19 39 39 H 1.08996 * 110.66106 * 100.88924 * 26 16 14 40 40 H 1.08999 * 110.66365 * 337.76922 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3707 0.0000 13 7 6.0489 -3.7520 -0.0006 14 6 7.3740 -3.9982 -0.0002 15 8 8.1641 -3.0741 0.0002 16 7 7.8232 -5.2689 -0.0003 17 6 7.0092 -6.4988 -0.0013 18 6 7.8682 -7.6093 -0.6343 19 6 9.2220 -6.9353 -0.9560 20 6 9.2671 -6.4797 -2.4160 21 8 10.5277 -5.8623 -2.6836 22 6 10.3848 -7.8798 -0.6455 23 9 10.2628 -9.0396 -1.4184 24 9 11.5946 -7.2448 -0.9461 25 9 10.3604 -8.2191 0.7116 26 6 9.2353 -5.7159 -0.0004 27 1 -0.4850 0.8401 0.0004 28 1 3.8648 -0.3634 0.0004 29 1 5.9240 -1.8569 0.8899 30 1 5.9240 -1.8569 -0.8900 31 1 5.4186 -4.4892 -0.0006 32 1 6.1061 -6.3458 -0.5920 33 1 6.7457 -6.7704 1.0209 34 1 8.0108 -8.4269 0.0723 35 1 7.4006 -7.9750 -1.5484 36 1 9.1393 -7.3424 -3.0699 37 1 8.4655 -5.7640 -2.5981 38 1 10.6268 -5.5487 -3.5929 39 1 9.5439 -6.0156 1.0011 40 1 9.8869 -4.9319 -0.3863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470097008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:06 Heat of formation + Delta-G solvation = -278.487256 kcal Electronic energy + Delta-G solvation = -30301.393452 eV Core-core repulsion = 25314.717717 eV Total energy + Delta-G solvation = -4986.675734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.10319 -48.62379 -48.50274 -41.62732 -40.43331 -39.36279 -37.26759 -36.29235 -35.36856 -33.86931 -33.63752 -30.65370 -29.62316 -27.24977 -26.82438 -25.79890 -24.23723 -21.55468 -21.37176 -21.18850 -20.59048 -19.64795 -19.40041 -19.15327 -18.38359 -18.20970 -17.57728 -17.16943 -16.93845 -16.75701 -16.18445 -15.96073 -15.74438 -15.49076 -15.35309 -15.25093 -15.02818 -14.93365 -14.86502 -14.68597 -14.67024 -14.44982 -14.32169 -14.05498 -13.77003 -13.68298 -13.44430 -12.96242 -12.73197 -12.69526 -12.46983 -12.43853 -11.99929 -11.86547 -11.57313 -11.48436 -11.03433 -10.65101 -10.39070 -10.30325 -9.72681 -8.44965 -6.06768 1.21420 1.32317 1.34775 1.44788 1.73527 1.78875 1.99504 2.21064 2.55225 2.61861 2.72766 2.89936 3.05440 3.11650 3.23375 3.48281 3.57367 3.92189 3.97441 4.04119 4.08840 4.37717 4.38726 4.42919 4.45370 4.49790 4.59044 4.65574 4.72537 4.92625 5.06041 5.23905 5.49273 5.86234 5.89951 6.49151 6.78297 6.78661 6.82535 7.28135 7.40204 7.78253 8.71322 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002264 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.991205 B =12365.274331 C =12712.218884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.233 1.233 7 C -0.330 4.330 8 H 0.065 0.935 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.613 6.613 12 C 0.137 3.863 13 N -0.722 5.722 14 C 0.729 3.271 15 O -0.623 6.623 16 N -0.635 5.635 17 C 0.094 3.906 18 C -0.112 4.112 19 C -0.120 4.120 20 C 0.092 3.908 21 O -0.580 6.580 22 C 0.472 3.528 23 F -0.179 7.179 24 F -0.175 7.175 25 F -0.183 7.183 26 C 0.140 3.860 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.410 0.590 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.402 0.598 39 H 0.088 0.912 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.192 -14.916 -4.074 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.156 1.156 7 C -0.459 4.459 8 H 0.083 0.917 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.499 6.499 12 C 0.009 3.991 13 N -0.380 5.380 14 C 0.431 3.569 15 O -0.504 6.504 16 N -0.372 5.372 17 C -0.029 4.029 18 C -0.149 4.149 19 C -0.123 4.123 20 C 0.014 3.986 21 O -0.390 6.390 22 C 0.417 3.583 23 F -0.161 7.161 24 F -0.156 7.156 25 F -0.165 7.165 26 C 0.017 3.983 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.249 0.751 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.106 0.894 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.202 -14.875 -3.440 26.945 hybrid contribution -0.374 0.690 -0.410 0.885 sum 21.828 -14.185 -3.850 26.315 Atomic orbital electron populations 1.69777 1.08019 1.29431 1.49324 1.26045 0.96404 1.02550 0.95761 0.85462 0.79589 0.77127 0.80063 1.18080 1.19974 1.15598 1.19024 0.80908 0.95265 1.50669 0.91701 1.41921 1.06146 1.07434 1.66265 1.20435 0.89896 0.83889 0.82326 1.90518 1.70728 1.32240 1.56375 1.20723 0.89401 0.83883 1.05083 1.44675 1.05205 1.08963 1.79126 1.15233 0.82049 0.81888 0.77716 1.90908 1.55867 1.43411 1.60251 1.47598 1.08069 1.03586 1.77960 1.22356 0.94960 0.82608 1.02928 1.22662 0.90208 0.97616 1.04456 1.23008 0.94616 0.95554 0.99098 1.22048 0.87097 0.98145 0.91348 1.86491 1.35040 1.80421 1.37003 1.20044 0.84175 0.80092 0.73972 1.93182 1.96038 1.51559 1.75279 1.93235 1.47888 1.81685 1.92822 1.93177 1.96648 1.93014 1.33643 1.22181 0.82713 0.94691 0.98761 0.90944 0.77231 0.88092 0.87840 0.75142 0.89358 0.89356 0.87227 0.86319 0.90024 0.91778 0.74703 0.89374 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.63 13.96 21.66 0.30 -53.33 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 3 Si 0.96 37.46 27.74 68.60 1.90 39.36 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 7 C -0.33 -18.30 10.16 84.04 0.85 -17.45 16 8 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 9 N -0.58 -25.84 5.09 -306.99 -1.56 -27.40 16 10 C 0.45 18.80 7.85 87.66 0.69 19.48 16 11 O -0.61 -30.30 15.24 -3.05 -0.05 -30.35 16 12 C 0.14 4.37 6.15 85.63 0.53 4.90 16 13 N -0.72 -21.46 5.50 -482.30 -2.65 -24.11 16 14 C 0.73 21.43 8.54 179.05 1.53 22.96 16 15 O -0.62 -22.54 16.55 -3.99 -0.07 -22.60 16 16 N -0.63 -13.76 3.19 -827.37 -2.64 -16.40 16 17 C 0.09 1.35 6.65 86.53 0.58 1.92 16 18 C -0.11 -1.10 5.80 31.48 0.18 -0.91 16 19 C -0.12 -1.73 0.35 -50.97 -0.02 -1.75 16 20 C 0.09 1.20 5.76 71.98 0.41 1.62 16 21 O -0.58 -8.90 11.27 -148.98 -1.68 -10.57 16 22 C 0.47 7.69 2.25 71.98 0.16 7.85 16 23 F -0.18 -2.78 16.85 44.97 0.76 -2.02 16 24 F -0.18 -3.57 15.31 44.97 0.69 -2.88 16 25 F -0.18 -3.07 15.79 44.97 0.71 -2.36 16 26 C 0.14 2.76 5.82 86.73 0.50 3.26 16 27 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 28 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 29 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.41 12.00 6.01 -92.71 -0.56 11.44 16 32 H 0.09 1.24 7.30 -2.39 -0.02 1.22 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 0.83 7.41 -2.38 -0.02 0.81 16 35 H 0.12 0.70 7.86 -2.39 -0.02 0.68 16 36 H 0.08 0.73 8.05 -2.39 -0.02 0.71 16 37 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 38 H 0.40 2.87 9.12 -74.06 -0.68 2.20 16 39 H 0.09 1.62 7.30 -2.39 -0.02 1.60 16 40 H 0.09 2.09 7.38 -2.39 -0.02 2.08 16 Total: -1.00 -76.41 346.44 0.92 -75.49 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.68 Total: 35.23 kcal Atomic # 6 Polarization: 36.05 SS G_CDS: 5.89 Total: 41.94 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -6.55 Total: -121.24 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: -1.79 Total: -63.52 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 2.16 Total: -7.26 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.90 Total: 39.36 kcal Total: -76.41 0.92 -75.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470097008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.998 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds