Wall clock time and date at job start Tue Mar 31 2020 22:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00336 * 2 1 4 4 H 1.48500 * 109.47413 * 240.00640 * 3 2 1 5 5 H 1.48498 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46936 * 120.00306 * 3 2 1 7 7 C 1.38958 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99697 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99553 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00632 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00015 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47364 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99618 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00607 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99266 * 180.02562 * 14 13 12 17 17 C 1.47419 * 125.65221 * 359.97417 * 16 14 13 18 18 C 1.54905 * 104.92834 * 155.83963 * 17 16 14 19 19 C 1.55448 * 101.45165 * 37.00468 * 18 17 16 20 20 C 1.53001 * 110.70643 * 82.89305 * 19 18 17 21 21 O 1.42901 * 109.47055 * 185.00277 * 20 19 18 22 22 C 1.52997 * 110.86081 * 206.07482 * 19 18 17 23 23 F 1.39899 * 109.47413 * 175.09133 * 22 19 18 24 24 F 1.39909 * 109.47288 * 295.08854 * 22 19 18 25 25 F 1.39896 * 109.47507 * 55.08955 * 22 19 18 26 26 C 1.47026 * 125.64203 * 180.02562 * 16 14 13 27 27 H 0.97006 * 119.99640 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00066 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46679 * 59.99649 * 12 10 9 30 30 H 1.09004 * 109.47006 * 300.00404 * 12 10 9 31 31 H 0.96998 * 119.99963 * 0.02562 * 13 12 10 32 32 H 1.09002 * 110.36926 * 274.73432 * 17 16 14 33 33 H 1.08995 * 110.36556 * 36.94716 * 17 16 14 34 34 H 1.09002 * 111.00852 * 155.13877 * 18 17 16 35 35 H 1.09004 * 111.00578 * 278.99532 * 18 17 16 36 36 H 1.09006 * 109.46997 * 304.99894 * 20 19 18 37 37 H 1.08997 * 109.47063 * 64.99503 * 20 19 18 38 38 H 0.96701 * 113.99863 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.88266 * 300.45023 * 26 16 14 40 40 H 1.09000 * 109.88221 * 61.61840 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5580 -0.0030 12 6 1.2436 -4.8630 -0.0010 13 7 2.1956 -5.9766 -0.0030 14 6 1.7462 -7.2472 -0.0023 15 8 0.5509 -7.4694 -0.0006 16 7 2.6221 -8.2716 -0.0036 17 6 4.0909 -8.1463 -0.0063 18 6 4.6058 -9.4728 0.6058 19 6 3.5920 -10.4962 0.0216 20 6 3.9990 -10.9137 -1.3930 21 8 2.9914 -11.7615 -1.9479 22 6 3.4687 -11.7206 0.9307 23 9 2.4707 -12.5684 0.4384 24 9 4.6888 -12.4045 0.9600 25 9 3.1338 -11.3086 2.2250 26 6 2.2707 -9.6993 -0.0036 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 0.0002 29 1 0.6159 -4.9205 -0.8903 30 1 0.6179 -4.9209 0.8897 31 1 3.1492 -5.7993 -0.0040 32 1 4.4600 -8.0302 -1.0254 33 1 4.4005 -7.3001 0.6071 34 1 5.6201 -9.6900 0.2708 35 1 4.5524 -9.4477 1.6942 36 1 4.1104 -10.0261 -2.0159 37 1 4.9461 -11.4518 -1.3546 38 1 3.1834 -12.0649 -2.8458 39 1 1.6787 -9.9353 0.8806 40 1 1.7080 -9.9425 -0.9049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470097011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:09 Heat of formation + Delta-G solvation = -258.557353 kcal Electronic energy + Delta-G solvation = -30138.094536 eV Core-core repulsion = 25152.283028 eV Total energy + Delta-G solvation = -4985.811509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.38096 -47.91036 -47.75893 -40.58030 -38.89402 -38.02432 -36.58667 -34.48399 -33.74067 -32.82569 -31.38923 -29.93214 -28.00679 -26.34583 -25.82309 -24.37143 -23.42903 -20.75344 -20.02932 -19.65441 -18.77436 -18.67886 -18.34112 -18.06128 -17.78369 -17.44176 -16.26944 -15.93668 -15.54335 -15.18647 -14.97558 -14.74339 -14.65200 -14.59249 -14.30358 -14.27295 -14.14115 -14.00959 -13.91800 -13.85810 -13.52449 -13.20787 -13.10832 -12.93293 -12.54015 -12.18925 -11.94770 -11.90772 -11.68474 -11.64554 -11.34710 -11.12090 -10.54038 -10.52451 -10.33602 -10.11295 -9.64577 -9.03847 -8.65424 -8.57179 -8.12073 -6.53060 -3.95292 2.19693 2.62049 3.12024 3.13330 3.20309 3.23779 3.25790 3.37176 3.50717 3.72667 3.80375 3.96712 4.10902 4.14031 4.26984 4.49934 4.58125 4.75403 4.85210 4.86911 4.93962 5.15510 5.16765 5.25893 5.37248 5.47102 5.55015 5.84521 5.97562 5.99095 6.07713 6.68630 6.99572 7.09112 7.44014 7.90067 8.06555 8.42949 8.68600 9.02533 9.37379 9.85040 10.63710 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.002117 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.407817 B =13221.607620 C =13407.463303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.720 5.720 14 C 0.725 3.275 15 O -0.588 6.588 16 N -0.638 5.638 17 C 0.099 3.901 18 C -0.120 4.120 19 C -0.124 4.124 20 C 0.088 3.912 21 O -0.561 6.561 22 C 0.470 3.530 23 F -0.165 7.165 24 F -0.182 7.182 25 F -0.179 7.179 26 C 0.147 3.853 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.388 0.612 39 H 0.076 0.924 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 -23.130 -1.876 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.214 3.786 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.378 5.378 14 C 0.427 3.573 15 O -0.466 6.466 16 N -0.378 5.378 17 C -0.024 4.024 18 C -0.158 4.158 19 C -0.126 4.126 20 C 0.010 3.990 21 O -0.368 6.368 22 C 0.415 3.585 23 F -0.147 7.147 24 F -0.163 7.163 25 F -0.161 7.161 26 C 0.023 3.977 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.236 0.764 39 H 0.095 0.905 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.524 -22.910 -1.276 24.477 hybrid contribution 0.542 0.627 -0.335 0.894 sum 9.066 -22.282 -1.611 24.110 Atomic orbital electron populations 1.69611 1.06015 1.28670 1.49111 1.25333 0.95668 0.99945 0.96746 0.85867 0.78777 0.80145 0.79140 1.19778 1.20843 1.19776 1.19675 0.93418 0.81992 1.48460 0.87728 1.41776 1.09518 1.04431 1.62515 1.19724 0.88272 0.84964 0.85626 1.90482 1.13741 1.86861 1.57529 1.20823 0.91189 0.84757 1.03296 1.44768 1.11356 1.03011 1.78665 1.15258 0.84086 0.79863 0.78099 1.90934 1.13460 1.83779 1.58450 1.47355 1.05741 1.04848 1.79869 1.22326 0.80554 0.98007 1.01521 1.22984 0.98150 0.92225 1.02398 1.23021 1.00877 0.93135 0.95533 1.22036 0.90971 0.95059 0.90912 1.86533 1.46447 1.68456 1.35330 1.19951 0.74045 0.84931 0.79526 1.93250 1.61282 1.72848 1.87281 1.93172 1.44824 1.81797 1.96517 1.93196 1.92373 1.90166 1.40348 1.21526 0.92894 0.78804 1.04449 0.91498 0.76978 0.89889 0.89885 0.75532 0.90628 0.89246 0.87925 0.88339 0.90938 0.91812 0.76410 0.90524 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 13.05 55.50 0.72 -22.99 16 2 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 3 Si 0.93 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 10 C 0.43 9.68 7.85 -10.98 -0.09 9.59 16 11 O -0.60 -14.97 15.24 5.54 0.08 -14.89 16 12 C 0.13 2.36 6.15 -5.19 -0.03 2.32 16 13 N -0.72 -12.09 5.49 -66.41 -0.36 -12.45 16 14 C 0.73 12.04 8.49 -86.91 -0.74 11.31 16 15 O -0.59 -11.81 16.67 5.29 0.09 -11.72 16 16 N -0.64 -7.98 3.33 -176.24 -0.59 -8.56 16 17 C 0.10 0.85 6.25 -2.53 -0.02 0.84 16 18 C -0.12 -0.79 5.90 -24.43 -0.14 -0.94 16 19 C -0.12 -1.01 0.31 -152.52 -0.05 -1.06 16 20 C 0.09 0.54 5.78 37.16 0.21 0.76 16 21 O -0.56 -3.98 11.41 -35.23 -0.40 -4.38 16 22 C 0.47 4.47 2.24 37.16 0.08 4.55 16 23 F -0.17 -1.83 15.61 2.25 0.04 -1.79 16 24 F -0.18 -1.62 16.67 2.25 0.04 -1.59 16 25 F -0.18 -1.90 15.79 2.25 0.04 -1.86 16 26 C 0.15 1.66 5.71 -3.06 -0.02 1.65 16 27 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.41 6.55 5.91 -40.82 -0.24 6.31 16 32 H 0.08 0.54 7.71 -51.93 -0.40 0.14 16 33 H 0.09 0.78 7.29 -51.93 -0.38 0.40 16 34 H 0.10 0.41 8.05 -51.93 -0.42 -0.01 16 35 H 0.10 0.69 7.40 -51.93 -0.38 0.31 16 36 H 0.07 0.39 7.44 -51.93 -0.39 0.00 16 37 H 0.06 0.29 7.79 -51.93 -0.40 -0.11 16 38 H 0.39 1.02 9.12 45.56 0.42 1.43 16 39 H 0.08 0.96 7.31 -51.93 -0.38 0.58 16 40 H 0.09 1.12 7.30 -51.93 -0.38 0.74 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -33.61 348.26 -4.84 -38.45 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -3.63 Total: 13.48 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: -1.02 Total: 21.25 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.28 Total: -57.49 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.23 Total: -30.99 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.61 -4.84 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470097011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.106 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds