Wall clock time and date at job start Tue Mar 31 2020 22:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00336 * 2 1 4 4 H 1.48500 * 109.47413 * 240.00640 * 3 2 1 5 5 H 1.48498 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46936 * 120.00306 * 3 2 1 7 7 C 1.38958 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99697 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99553 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00632 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00015 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47364 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99618 * 179.97438 * 13 12 10 15 15 O 1.21582 * 120.00607 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99266 * 180.02562 * 14 13 12 17 17 C 1.47419 * 125.65221 * 359.97417 * 16 14 13 18 18 C 1.54905 * 104.92834 * 155.83963 * 17 16 14 19 19 C 1.55448 * 101.45165 * 37.00468 * 18 17 16 20 20 C 1.53001 * 110.70643 * 82.89305 * 19 18 17 21 21 O 1.42901 * 109.47055 * 185.00277 * 20 19 18 22 22 C 1.52997 * 110.86081 * 206.07482 * 19 18 17 23 23 F 1.39899 * 109.47413 * 175.09133 * 22 19 18 24 24 F 1.39909 * 109.47288 * 295.08854 * 22 19 18 25 25 F 1.39896 * 109.47507 * 55.08955 * 22 19 18 26 26 C 1.47026 * 125.64203 * 180.02562 * 16 14 13 27 27 H 0.97006 * 119.99640 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00066 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46679 * 59.99649 * 12 10 9 30 30 H 1.09004 * 109.47006 * 300.00404 * 12 10 9 31 31 H 0.96998 * 119.99963 * 0.02562 * 13 12 10 32 32 H 1.09002 * 110.36926 * 274.73432 * 17 16 14 33 33 H 1.08995 * 110.36556 * 36.94716 * 17 16 14 34 34 H 1.09002 * 111.00852 * 155.13877 * 18 17 16 35 35 H 1.09004 * 111.00578 * 278.99532 * 18 17 16 36 36 H 1.09006 * 109.46997 * 304.99894 * 20 19 18 37 37 H 1.08997 * 109.47063 * 64.99503 * 20 19 18 38 38 H 0.96701 * 113.99863 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.88266 * 300.45023 * 26 16 14 40 40 H 1.09000 * 109.88221 * 61.61840 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5580 -0.0030 12 6 1.2436 -4.8630 -0.0010 13 7 2.1956 -5.9766 -0.0030 14 6 1.7462 -7.2472 -0.0023 15 8 0.5509 -7.4694 -0.0006 16 7 2.6221 -8.2716 -0.0036 17 6 4.0909 -8.1463 -0.0063 18 6 4.6058 -9.4728 0.6058 19 6 3.5920 -10.4962 0.0216 20 6 3.9990 -10.9137 -1.3930 21 8 2.9914 -11.7615 -1.9479 22 6 3.4687 -11.7206 0.9307 23 9 2.4707 -12.5684 0.4384 24 9 4.6888 -12.4045 0.9600 25 9 3.1338 -11.3086 2.2250 26 6 2.2707 -9.6993 -0.0036 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 0.0002 29 1 0.6159 -4.9205 -0.8903 30 1 0.6179 -4.9209 0.8897 31 1 3.1492 -5.7993 -0.0040 32 1 4.4600 -8.0302 -1.0254 33 1 4.4005 -7.3001 0.6071 34 1 5.6201 -9.6900 0.2708 35 1 4.5524 -9.4477 1.6942 36 1 4.1104 -10.0261 -2.0159 37 1 4.9461 -11.4518 -1.3546 38 1 3.1834 -12.0649 -2.8458 39 1 1.6787 -9.9353 0.8806 40 1 1.7080 -9.9425 -0.9049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470097011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:08 Heat of formation + Delta-G solvation = -285.776611 kcal Electronic energy + Delta-G solvation = -30139.274852 eV Core-core repulsion = 25152.283028 eV Total energy + Delta-G solvation = -4986.991824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.14739 -48.66788 -48.55393 -41.65385 -40.32096 -39.38690 -37.22897 -36.25367 -35.35405 -33.76585 -33.33099 -30.67266 -29.47331 -27.15857 -26.85646 -25.94843 -24.29077 -21.58495 -21.30931 -21.18864 -20.14938 -19.67209 -19.44915 -19.12275 -18.44608 -18.18911 -17.50015 -17.36491 -16.98181 -16.54437 -16.23953 -15.94002 -15.83147 -15.49512 -15.34352 -15.28879 -15.15024 -15.04529 -14.77659 -14.70906 -14.61416 -14.34067 -14.07111 -13.84171 -13.65425 -13.54260 -13.52127 -13.06934 -12.88354 -12.64204 -12.45863 -12.37306 -12.13115 -11.93612 -11.54994 -11.50567 -10.97438 -10.55261 -10.38486 -10.09186 -9.67583 -8.49960 -6.00255 1.22017 1.39054 1.44190 1.55034 1.71239 1.89386 2.00923 2.28400 2.50753 2.61444 2.84365 2.86602 3.17034 3.17386 3.20117 3.43312 3.52348 3.91943 3.99596 4.13378 4.20002 4.38850 4.42563 4.44650 4.47160 4.52555 4.56363 4.65286 4.75181 4.91307 5.07636 5.25461 5.39238 5.84076 5.92608 6.48353 6.81540 6.86391 7.04003 7.36528 7.46487 7.94497 8.66744 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.002117 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.407817 B =13221.607620 C =13407.463303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.140 3.860 13 N -0.718 5.718 14 C 0.723 3.277 15 O -0.629 6.629 16 N -0.633 5.633 17 C 0.091 3.909 18 C -0.110 4.110 19 C -0.116 4.116 20 C 0.089 3.911 21 O -0.585 6.585 22 C 0.468 3.532 23 F -0.177 7.177 24 F -0.175 7.175 25 F -0.189 7.189 26 C 0.146 3.854 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.411 0.589 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.405 0.595 39 H 0.057 0.943 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.938 -23.518 -2.398 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.510 6.510 12 C 0.012 3.988 13 N -0.376 5.376 14 C 0.424 3.576 15 O -0.510 6.510 16 N -0.372 5.372 17 C -0.030 4.030 18 C -0.147 4.147 19 C -0.118 4.118 20 C 0.011 3.989 21 O -0.395 6.395 22 C 0.414 3.586 23 F -0.159 7.159 24 F -0.156 7.156 25 F -0.170 7.170 26 C 0.022 3.978 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.250 0.750 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.158 0.842 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.257 0.743 39 H 0.075 0.925 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.380 -23.342 -1.811 25.610 hybrid contribution -0.010 0.628 -0.167 0.650 sum 10.370 -22.714 -1.978 25.048 Atomic orbital electron populations 1.69683 1.07065 1.29697 1.49256 1.26145 0.96519 1.02736 0.95791 0.84921 0.77701 0.76191 0.79151 1.19365 1.19803 1.19448 1.19713 0.93014 0.83450 1.50408 0.89370 1.41828 1.09612 1.04595 1.63391 1.20319 0.88103 0.85744 0.83595 1.90459 1.14999 1.87507 1.58029 1.20622 0.90997 0.83080 1.04127 1.44637 1.11171 1.02795 1.78990 1.15349 0.84037 0.80252 0.77932 1.90900 1.15432 1.84395 1.60279 1.47343 1.07210 1.04399 1.78208 1.22662 0.77905 0.99263 1.03217 1.23051 0.99448 0.90136 1.02092 1.23041 0.99404 0.92336 0.97000 1.22142 0.91477 0.95856 0.89400 1.86492 1.47297 1.68746 1.36929 1.20152 0.73909 0.85270 0.79309 1.93227 1.61918 1.73322 1.87386 1.93181 1.44256 1.81732 1.96476 1.93179 1.92492 1.90240 1.41136 1.21518 0.94733 0.78554 1.03009 0.91086 0.76725 0.88941 0.89120 0.75007 0.88316 0.89242 0.84151 0.88762 0.89720 0.89408 0.74325 0.92454 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.48 13.05 21.67 0.28 -48.19 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.15 29.55 68.60 2.03 43.17 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.34 -18.24 9.68 84.04 0.81 -17.43 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.70 5.29 -306.98 -1.62 -29.32 16 10 C 0.44 19.71 7.85 87.66 0.69 20.39 16 11 O -0.62 -31.06 15.24 -3.07 -0.05 -31.10 16 12 C 0.14 5.14 6.15 85.63 0.53 5.67 16 13 N -0.72 -23.68 5.49 -482.27 -2.65 -26.33 16 14 C 0.72 23.81 8.49 179.05 1.52 25.33 16 15 O -0.63 -25.53 16.67 -3.98 -0.07 -25.60 16 16 N -0.63 -15.27 3.33 -829.78 -2.76 -18.03 16 17 C 0.09 1.36 6.25 86.85 0.54 1.90 16 18 C -0.11 -1.13 5.90 32.09 0.19 -0.95 16 19 C -0.12 -1.68 0.31 -50.89 -0.02 -1.69 16 20 C 0.09 0.84 5.78 71.98 0.42 1.26 16 21 O -0.58 -7.27 11.41 -148.98 -1.70 -8.97 16 22 C 0.47 8.29 2.24 71.98 0.16 8.46 16 23 F -0.18 -3.82 15.61 44.97 0.70 -3.12 16 24 F -0.18 -2.74 16.67 44.97 0.75 -1.99 16 25 F -0.19 -3.89 15.79 44.97 0.71 -3.18 16 26 C 0.15 3.23 5.71 86.73 0.50 3.73 16 27 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 28 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 29 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 30 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 31 H 0.41 12.86 5.91 -92.71 -0.55 12.32 16 32 H 0.10 1.08 7.71 -2.39 -0.02 1.06 16 33 H 0.09 1.38 7.29 -2.39 -0.02 1.36 16 34 H 0.14 0.47 8.05 -2.39 -0.02 0.45 16 35 H 0.09 1.11 7.40 -2.38 -0.02 1.09 16 36 H 0.08 0.61 7.44 -2.38 -0.02 0.59 16 37 H 0.09 0.44 7.79 -2.39 -0.02 0.43 16 38 H 0.41 1.34 9.12 -74.06 -0.68 0.66 16 39 H 0.06 1.49 7.31 -2.39 -0.02 1.47 16 40 H 0.08 1.99 7.30 -2.39 -0.02 1.97 16 Total: -1.00 -72.86 348.26 0.63 -72.24 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.81 Total: 33.87 kcal Atomic # 6 Polarization: 40.75 SS G_CDS: 5.80 Total: 46.55 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -6.75 Total: -121.87 kcal Atomic # 8 Polarization: -63.86 SS G_CDS: -1.81 Total: -65.67 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 2.16 Total: -8.29 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -72.86 0.63 -72.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470097011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.540 kcal (2) G-P(sol) polarization free energy of solvation -72.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds