Wall clock time and date at job start Tue Mar 31 2020 22:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46903 * 300.00137 * 3 2 1 6 6 H 1.48502 * 109.46930 * 59.99823 * 3 2 1 7 7 C 1.37879 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99638 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00097 * 0.02562 * 7 2 1 10 10 O 1.42898 * 113.25812 * 312.95149 * 9 7 2 11 11 C 1.53512 * 114.17050 * 180.02562 * 9 7 2 12 12 N 1.47485 * 87.93369 * 220.13837 * 11 9 7 13 13 C 1.46902 * 110.99842 * 138.69918 * 12 11 9 14 14 C 1.53006 * 109.46626 * 170.00127 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 O 1.21240 * 120.00223 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00033 * 180.02562 * 15 14 13 18 18 C 1.34775 * 120.00107 * 180.02562 * 17 15 14 19 19 O 1.21545 * 119.99834 * 359.97438 * 18 17 15 20 20 N 1.34779 * 120.00107 * 180.02562 * 18 17 15 21 21 C 1.46497 * 119.99798 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.47006 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.46685 * 59.99626 * 22 21 20 24 24 F 1.39891 * 109.47280 * 179.97438 * 22 21 20 25 25 F 1.39902 * 109.46875 * 300.00329 * 22 21 20 26 26 C 1.47479 * 87.83288 * 27.01031 * 12 11 9 27 27 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 28 28 H 0.96697 * 114.00159 * 47.05137 * 10 9 7 29 29 H 1.08994 * 113.47881 * 105.37363 * 11 9 7 30 30 H 1.09002 * 113.52975 * 334.90879 * 11 9 7 31 31 H 1.09000 * 109.47263 * 50.00433 * 13 12 11 32 32 H 1.09001 * 109.47582 * 289.99712 * 13 12 11 33 33 H 1.08993 * 109.46955 * 300.00347 * 14 13 12 34 34 H 1.09000 * 109.47050 * 60.00176 * 14 13 12 35 35 H 0.96996 * 119.99850 * 359.97438 * 17 15 14 36 36 H 0.96996 * 119.99850 * 359.97438 * 20 18 17 37 37 H 1.08993 * 109.47637 * 299.99524 * 21 20 18 38 38 H 1.09000 * 109.47357 * 59.99959 * 21 20 18 39 39 H 1.09003 * 113.48076 * 87.75656 * 26 12 11 40 40 H 1.09000 * 113.47438 * 218.22438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.1938 -2.5403 0.9611 11 6 2.1495 -3.7438 0.0018 12 7 1.2056 -4.3607 -0.9488 13 6 1.9220 -5.0911 -2.0030 14 6 0.9253 -5.9175 -2.8183 15 6 1.6602 -6.6673 -3.8993 16 8 2.8623 -6.5517 -4.0074 17 7 0.9812 -7.4655 -4.7468 18 6 1.6385 -8.1365 -5.7133 19 8 2.8437 -8.0213 -5.8210 20 7 0.9594 -8.9344 -6.5610 21 6 1.6739 -9.6632 -7.6119 22 6 0.6772 -10.4892 -8.4277 23 9 -0.2675 -9.6375 -9.0104 24 9 1.3593 -11.1847 -9.4316 25 9 0.0281 -11.3999 -7.5871 26 6 0.8528 -3.0000 -1.3949 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3707 -1.7552 0.9585 29 1 2.1881 -4.2506 0.9660 30 1 3.1384 -3.5670 -0.4213 31 1 2.6585 -5.7542 -1.5493 32 1 2.4269 -4.3811 -2.6581 33 1 0.4203 -6.6273 -2.1632 34 1 0.1888 -5.2543 -3.2719 35 1 0.0195 -7.5577 -4.6606 36 1 -0.0025 -9.0260 -6.4753 37 1 2.1798 -8.9537 -8.2666 38 1 2.4096 -10.3271 -7.1579 39 1 1.4953 -2.6236 -2.1910 40 1 -0.2077 -2.8763 -1.6143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:10 Heat of formation + Delta-G solvation = -223.151209 kcal Electronic energy + Delta-G solvation = -28768.181309 eV Core-core repulsion = 23783.905126 eV Total energy + Delta-G solvation = -4984.276183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.78366 -48.29165 -48.26003 -41.47108 -39.36196 -38.64277 -35.58188 -34.85005 -34.54575 -32.13471 -31.82826 -29.97339 -27.49201 -25.35471 -24.91779 -24.11189 -22.71265 -21.26752 -20.61240 -19.75346 -19.25608 -19.01788 -18.69313 -17.95224 -17.35458 -16.94684 -16.64682 -15.87637 -15.55244 -15.24614 -15.16381 -15.00886 -14.93623 -14.73682 -14.67847 -14.40408 -14.39051 -14.27726 -14.13234 -13.79959 -13.59859 -13.24083 -12.73436 -12.57755 -11.96720 -11.90786 -11.47509 -11.38577 -11.25410 -11.06368 -10.76160 -10.56378 -10.40566 -10.29181 -9.98261 -9.94877 -9.85889 -9.29289 -8.67167 -8.23984 -7.94387 -6.29486 -4.38567 1.57960 1.84718 2.06358 2.92104 3.01447 3.17723 3.19581 3.26764 3.31317 3.35222 3.64263 4.23608 4.39695 4.49814 4.62795 4.85983 4.93032 5.11520 5.29941 5.38979 5.60488 5.65700 5.85085 5.93602 5.97884 6.13149 6.23716 6.31449 6.41110 6.67295 6.91041 6.99763 7.10584 7.33557 7.74754 7.80500 7.87323 7.91952 7.99805 8.64301 9.31782 9.65829 10.76647 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.001730 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.472512 B =16182.835590 C =16306.202780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.246 3.754 10 O -0.570 6.570 11 C 0.006 3.994 12 N -0.474 5.474 13 C 0.030 3.970 14 C -0.125 4.125 15 C 0.519 3.481 16 O -0.464 6.464 17 N -0.690 5.690 18 C 0.703 3.297 19 O -0.523 6.523 20 N -0.741 5.741 21 C 0.096 3.904 22 C 0.450 3.550 23 F -0.177 7.177 24 F -0.171 7.171 25 F -0.177 7.177 26 C -0.024 4.024 27 H 0.271 0.729 28 H 0.390 0.610 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.413 0.587 36 H 0.406 0.594 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.060 0.940 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -19.862 -16.125 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.086 0.914 9 C 0.205 3.795 10 O -0.383 6.383 11 C -0.123 4.123 12 N -0.197 5.197 13 C -0.100 4.100 14 C -0.165 4.165 15 C 0.305 3.695 16 O -0.331 6.331 17 N -0.356 5.356 18 C 0.403 3.597 19 O -0.394 6.394 20 N -0.402 5.402 21 C -0.031 4.031 22 C 0.395 3.605 23 F -0.159 7.159 24 F -0.152 7.152 25 F -0.159 7.159 26 C -0.153 4.153 27 H 0.081 0.919 28 H 0.246 0.754 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.248 0.752 36 H 0.242 0.758 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.194 -20.613 -15.931 26.144 hybrid contribution -0.495 1.496 -0.870 1.800 sum -2.688 -19.117 -16.801 25.592 Atomic orbital electron populations 1.69298 1.06106 1.27725 1.50871 1.25069 0.95005 0.99734 0.93390 0.86340 0.80134 0.82597 0.77789 1.19537 1.20766 1.20650 1.21634 0.93787 0.90513 1.51167 0.91450 1.19362 0.85110 0.90694 0.84365 1.86025 1.45212 1.48090 1.58934 1.24052 0.95387 0.96327 0.96512 1.68817 1.27144 1.13905 1.09799 1.22413 0.94866 0.98020 0.94661 1.21591 0.99977 0.99862 0.95079 1.21325 0.88283 0.78123 0.81736 1.90839 1.14204 1.59076 1.69009 1.44259 1.13527 1.46054 1.31786 1.15948 0.85541 0.78854 0.79371 1.91115 1.11389 1.64875 1.71989 1.44806 1.11403 1.50043 1.33939 1.22340 0.92963 0.97080 0.90701 1.20499 0.81482 0.79266 0.79246 1.93244 1.67100 1.70159 1.85361 1.93241 1.79484 1.80251 1.62265 1.93242 1.82972 1.68850 1.70823 1.24792 1.00835 0.87676 1.02001 0.91892 0.75418 0.90968 0.91600 0.90961 0.93161 0.87500 0.88061 0.75201 0.75836 0.86415 0.86433 0.92147 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 11.02 55.43 0.61 -23.07 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.06 8.70 -34.44 -0.30 -14.36 16 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.25 6.13 1.56 -91.24 -0.14 5.99 16 10 O -0.57 -15.13 13.53 -35.23 -0.48 -15.61 16 11 C 0.01 0.13 7.09 -7.55 -0.05 0.07 16 12 N -0.47 -9.39 6.33 -244.62 -1.55 -10.93 16 13 C 0.03 0.50 4.11 -3.82 -0.02 0.48 16 14 C -0.12 -1.51 6.03 -27.88 -0.17 -1.68 16 15 C 0.52 6.68 7.77 -10.99 -0.09 6.59 16 16 O -0.46 -8.33 14.38 -18.21 -0.26 -8.59 16 17 N -0.69 -6.08 5.24 -15.78 -0.08 -6.17 16 18 C 0.70 7.33 8.50 -86.92 -0.74 6.59 16 19 O -0.52 -8.20 14.74 -18.48 -0.27 -8.47 16 20 N -0.74 -4.44 5.42 -65.24 -0.35 -4.79 16 21 C 0.10 0.49 5.64 -4.04 -0.02 0.47 16 22 C 0.45 2.26 3.11 37.16 0.12 2.37 16 23 F -0.18 -1.03 17.18 2.25 0.04 -0.99 16 24 F -0.17 -1.02 17.32 2.25 0.04 -0.98 16 25 F -0.18 -1.01 17.18 2.25 0.04 -0.97 16 26 C -0.02 -0.53 7.13 -7.55 -0.05 -0.58 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.39 10.51 6.33 45.56 0.29 10.80 16 29 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.07 1.37 7.87 -51.93 -0.41 0.96 16 31 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 32 H 0.05 0.90 7.26 -51.93 -0.38 0.52 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.41 1.69 8.71 -40.82 -0.36 1.34 16 36 H 0.41 1.29 8.37 -40.82 -0.34 0.95 16 37 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 40 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -34.12 357.16 -7.55 -41.66 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.08 Total: 10.64 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.56 Total: 7.67 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -1.37 Total: -44.96 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.01 Total: -32.67 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.12 Total: -2.93 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.12 -7.55 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.488 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds