Wall clock time and date at job start Tue Mar 31 2020 22:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46903 * 300.00137 * 3 2 1 6 6 H 1.48502 * 109.46930 * 59.99823 * 3 2 1 7 7 C 1.37879 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99638 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00097 * 0.02562 * 7 2 1 10 10 O 1.42898 * 113.25812 * 312.95149 * 9 7 2 11 11 C 1.53512 * 114.17050 * 180.02562 * 9 7 2 12 12 N 1.47485 * 87.93369 * 220.13837 * 11 9 7 13 13 C 1.46902 * 110.99842 * 138.69918 * 12 11 9 14 14 C 1.53006 * 109.46626 * 170.00127 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 O 1.21240 * 120.00223 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00033 * 180.02562 * 15 14 13 18 18 C 1.34775 * 120.00107 * 180.02562 * 17 15 14 19 19 O 1.21545 * 119.99834 * 359.97438 * 18 17 15 20 20 N 1.34779 * 120.00107 * 180.02562 * 18 17 15 21 21 C 1.46497 * 119.99798 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.47006 * 179.97438 * 21 20 18 23 23 F 1.39899 * 109.46685 * 59.99626 * 22 21 20 24 24 F 1.39891 * 109.47280 * 179.97438 * 22 21 20 25 25 F 1.39902 * 109.46875 * 300.00329 * 22 21 20 26 26 C 1.47479 * 87.83288 * 27.01031 * 12 11 9 27 27 H 0.97002 * 120.00034 * 0.02562 * 1 2 3 28 28 H 0.96697 * 114.00159 * 47.05137 * 10 9 7 29 29 H 1.08994 * 113.47881 * 105.37363 * 11 9 7 30 30 H 1.09002 * 113.52975 * 334.90879 * 11 9 7 31 31 H 1.09000 * 109.47263 * 50.00433 * 13 12 11 32 32 H 1.09001 * 109.47582 * 289.99712 * 13 12 11 33 33 H 1.08993 * 109.46955 * 300.00347 * 14 13 12 34 34 H 1.09000 * 109.47050 * 60.00176 * 14 13 12 35 35 H 0.96996 * 119.99850 * 359.97438 * 17 15 14 36 36 H 0.96996 * 119.99850 * 359.97438 * 20 18 17 37 37 H 1.08993 * 109.47637 * 299.99524 * 21 20 18 38 38 H 1.09000 * 109.47357 * 59.99959 * 21 20 18 39 39 H 1.09003 * 113.48076 * 87.75656 * 26 12 11 40 40 H 1.09000 * 113.47438 * 218.22438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.1938 -2.5403 0.9611 11 6 2.1495 -3.7438 0.0018 12 7 1.2056 -4.3607 -0.9488 13 6 1.9220 -5.0911 -2.0030 14 6 0.9253 -5.9175 -2.8183 15 6 1.6602 -6.6673 -3.8993 16 8 2.8623 -6.5517 -4.0074 17 7 0.9812 -7.4655 -4.7468 18 6 1.6385 -8.1365 -5.7133 19 8 2.8437 -8.0213 -5.8210 20 7 0.9594 -8.9344 -6.5610 21 6 1.6739 -9.6632 -7.6119 22 6 0.6772 -10.4892 -8.4277 23 9 -0.2675 -9.6375 -9.0104 24 9 1.3593 -11.1847 -9.4316 25 9 0.0281 -11.3999 -7.5871 26 6 0.8528 -3.0000 -1.3949 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3707 -1.7552 0.9585 29 1 2.1881 -4.2506 0.9660 30 1 3.1384 -3.5670 -0.4213 31 1 2.6585 -5.7542 -1.5493 32 1 2.4269 -4.3811 -2.6581 33 1 0.4203 -6.6273 -2.1632 34 1 0.1888 -5.2543 -3.2719 35 1 0.0195 -7.5577 -4.6606 36 1 -0.0025 -9.0260 -6.4753 37 1 2.1798 -8.9537 -8.2666 38 1 2.4096 -10.3271 -7.1579 39 1 1.4953 -2.6236 -2.1910 40 1 -0.2077 -2.8763 -1.6143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:09 Heat of formation + Delta-G solvation = -252.207372 kcal Electronic energy + Delta-G solvation = -28769.441279 eV Core-core repulsion = 23783.905126 eV Total energy + Delta-G solvation = -4985.536153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.23090 -48.74580 -48.70464 -42.37854 -40.95578 -39.73543 -36.44469 -36.25934 -35.77913 -34.09442 -33.22613 -30.58957 -29.13279 -26.89296 -26.65387 -24.88911 -23.70162 -22.38801 -21.62723 -20.54940 -20.44040 -19.69564 -19.50672 -19.22104 -18.68927 -17.86814 -17.54413 -17.12441 -16.82909 -16.48645 -16.38152 -15.89478 -15.76005 -15.66308 -15.46378 -15.43353 -15.12852 -15.10005 -14.87086 -14.84058 -14.82334 -14.44657 -14.10905 -13.76834 -13.45131 -13.28165 -13.03458 -12.96572 -12.77314 -12.38566 -12.27950 -12.24456 -12.16366 -11.65755 -11.35919 -11.15601 -10.93315 -10.63221 -10.59342 -10.07376 -9.71216 -8.25574 -6.42090 0.88856 0.90031 1.40917 1.44695 1.55465 1.58076 2.06025 2.37229 2.49674 2.59710 2.92306 2.95494 3.14214 3.27310 3.63875 3.82084 3.97542 4.07615 4.21506 4.26355 4.28246 4.37975 4.54416 4.61046 4.77210 4.81190 4.88349 4.92279 5.02308 5.18024 5.33954 5.41706 5.46009 5.76882 5.98222 6.24358 6.29607 6.63227 6.95647 7.11388 7.30774 7.58879 8.79728 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.001730 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.472512 B =16182.835590 C =16306.202780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.558 4.558 8 H 0.061 0.939 9 C 0.217 3.783 10 O -0.581 6.581 11 C 0.010 3.990 12 N -0.464 5.464 13 C 0.029 3.971 14 C -0.113 4.113 15 C 0.528 3.472 16 O -0.520 6.520 17 N -0.670 5.670 18 C 0.703 3.297 19 O -0.577 6.577 20 N -0.720 5.720 21 C 0.094 3.906 22 C 0.461 3.539 23 F -0.180 7.180 24 F -0.175 7.175 25 F -0.179 7.179 26 C -0.010 4.010 27 H 0.275 0.725 28 H 0.384 0.616 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.437 0.563 36 H 0.423 0.577 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.057 0.943 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 -20.595 -16.984 27.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.172 4.172 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.080 0.920 9 C 0.176 3.824 10 O -0.393 6.393 11 C -0.119 4.119 12 N -0.186 5.186 13 C -0.100 4.100 14 C -0.153 4.153 15 C 0.315 3.685 16 O -0.391 6.391 17 N -0.338 5.338 18 C 0.403 3.597 19 O -0.451 6.451 20 N -0.381 5.381 21 C -0.032 4.032 22 C 0.406 3.594 23 F -0.161 7.161 24 F -0.156 7.156 25 F -0.160 7.160 26 C -0.140 4.140 27 H 0.085 0.915 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.153 0.847 34 H 0.138 0.862 35 H 0.277 0.723 36 H 0.261 0.739 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.297 -21.397 -16.814 27.412 hybrid contribution -0.230 1.653 -0.628 1.783 sum -3.527 -19.744 -17.441 26.579 Atomic orbital electron populations 1.69356 1.06988 1.28623 1.50807 1.25771 0.95856 1.02578 0.92963 0.85390 0.78802 0.78835 0.77885 1.19557 1.20188 1.20244 1.21868 0.93769 0.91850 1.52081 0.92032 1.19714 0.85522 0.91558 0.85583 1.86006 1.45609 1.47763 1.59882 1.23976 0.95443 0.95164 0.97289 1.68758 1.26967 1.12636 1.10204 1.22405 0.95859 0.97804 0.93955 1.21480 0.98823 1.00121 0.94871 1.21359 0.87479 0.77820 0.81805 1.90833 1.16612 1.61115 1.70555 1.43878 1.14665 1.44688 1.30538 1.16074 0.84961 0.78971 0.79685 1.91094 1.13948 1.66688 1.73405 1.44576 1.12140 1.48512 1.32844 1.22427 0.93057 0.97224 0.90502 1.20319 0.81125 0.78974 0.78938 1.93244 1.67210 1.70229 1.85431 1.93236 1.79604 1.80333 1.62456 1.93243 1.82999 1.68952 1.70844 1.24526 1.00297 0.88836 1.00325 0.91499 0.76081 0.90832 0.91117 0.91066 0.94702 0.84725 0.86220 0.72255 0.73871 0.86039 0.85905 0.92467 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.23 11.02 21.45 0.24 -47.99 16 2 C 0.03 1.46 5.39 84.65 0.46 1.92 16 3 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.56 -29.63 8.70 25.60 0.22 -29.41 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 9 C 0.22 10.86 1.56 -11.20 -0.02 10.84 16 10 O -0.58 -31.03 13.53 -148.98 -2.02 -33.05 16 11 C 0.01 0.44 7.09 83.57 0.59 1.03 16 12 N -0.46 -17.87 6.33 -928.22 -5.88 -23.75 16 13 C 0.03 0.94 4.11 86.31 0.35 1.29 16 14 C -0.11 -2.47 6.03 29.85 0.18 -2.29 16 15 C 0.53 12.79 7.77 87.66 0.68 13.47 16 16 O -0.52 -18.66 14.38 19.86 0.29 -18.38 16 17 N -0.67 -10.30 5.24 -440.51 -2.31 -12.61 16 18 C 0.70 13.60 8.50 179.05 1.52 15.13 16 19 O -0.58 -17.97 14.74 18.91 0.28 -17.69 16 20 N -0.72 -7.09 5.42 -478.58 -2.59 -9.68 16 21 C 0.09 0.82 5.64 86.38 0.49 1.31 16 22 C 0.46 3.80 3.11 71.98 0.22 4.02 16 23 F -0.18 -1.73 17.18 44.97 0.77 -0.95 16 24 F -0.17 -1.83 17.32 44.97 0.78 -1.05 16 25 F -0.18 -1.67 17.18 44.97 0.77 -0.89 16 26 C -0.01 -0.45 7.13 83.57 0.60 0.14 16 27 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 28 H 0.38 21.00 6.33 -74.06 -0.47 20.53 16 29 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.07 2.94 7.87 -2.39 -0.02 2.92 16 31 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 32 H 0.03 1.24 7.26 -2.39 -0.02 1.22 16 33 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.44 2.07 8.71 -92.71 -0.81 1.26 16 36 H 0.42 1.44 8.37 -92.71 -0.78 0.67 16 37 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 2.53 7.38 -2.39 -0.02 2.51 16 40 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -74.58 357.16 -3.26 -77.85 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.91 Total: 27.39 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 5.30 Total: 17.45 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -10.54 Total: -94.03 kcal Atomic # 8 Polarization: -67.66 SS G_CDS: -1.45 Total: -69.11 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 2.32 Total: -2.90 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -74.58 -3.26 -77.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.362 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds