Wall clock time and date at job start Tue Mar 31 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48506 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47303 * 299.99420 * 3 2 1 6 6 H 1.48500 * 109.47483 * 59.99487 * 3 2 1 7 7 C 1.37877 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46951 * 60.00293 * 9 7 2 11 11 N 1.46505 * 109.47031 * 180.02562 * 9 7 2 12 12 C 1.34774 * 119.99963 * 205.00120 * 11 9 7 13 13 O 1.21583 * 119.99861 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00103 * 179.97438 * 12 11 9 15 15 N 1.40105 * 119.99633 * 0.02562 * 14 12 11 16 16 C 1.34777 * 119.99775 * 179.72021 * 15 14 12 17 17 O 1.21283 * 120.00222 * 0.28016 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27576 * 16 15 14 19 19 H 1.08997 * 109.47628 * 304.98512 * 18 16 15 20 20 C 1.53096 * 109.47703 * 64.99838 * 18 16 15 21 21 C 1.53176 * 109.16115 * 177.59046 * 20 18 16 22 22 C 1.53175 * 109.04143 * 303.02488 * 21 20 18 23 23 C 1.53102 * 109.16334 * 56.97777 * 22 21 20 24 24 O 1.42897 * 109.48339 * 184.94615 * 18 16 15 25 25 C 1.52997 * 109.47511 * 300.00033 * 9 7 2 26 26 F 1.39903 * 109.47122 * 300.00478 * 25 9 7 27 27 F 1.39896 * 109.47026 * 59.99841 * 25 9 7 28 28 F 1.39895 * 109.47706 * 180.02562 * 25 9 7 29 29 H 0.96999 * 120.00044 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99500 * 25.00228 * 11 9 7 31 31 H 0.97000 * 120.00523 * 179.97438 * 14 12 11 32 32 H 0.97001 * 120.00437 * 0.02562 * 15 14 12 33 33 H 1.08992 * 109.52620 * 297.49900 * 20 18 16 34 34 H 1.08996 * 109.52054 * 57.69406 * 20 18 16 35 35 H 1.09001 * 109.54184 * 62.89038 * 21 20 18 36 36 H 1.09000 * 109.54527 * 183.15602 * 21 20 18 37 37 H 1.08998 * 109.52711 * 176.88370 * 22 21 20 38 38 H 1.08995 * 109.52347 * 297.00989 * 22 21 20 39 39 H 1.08995 * 109.47742 * 62.37543 * 23 22 21 40 40 H 1.08993 * 109.47841 * 182.41122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8897 11 7 2.2030 -3.6127 0.0018 12 6 1.8372 -4.8125 -0.4913 13 8 0.7173 -4.9706 -0.9375 14 7 2.7131 -5.8368 -0.4906 15 7 4.0038 -5.6544 0.0231 16 6 4.8779 -6.6803 0.0289 17 8 4.5490 -7.7598 -0.4152 18 6 6.2642 -6.4859 0.5872 19 1 6.7448 -5.6476 0.0829 20 6 6.1741 -6.1954 2.0876 21 6 7.5887 -6.0588 2.6591 22 6 8.3739 -7.3398 2.3610 23 6 8.3789 -7.5861 0.8499 24 8 7.0328 -7.6723 0.3783 25 6 0.3708 -2.5799 1.2494 26 9 1.1747 -2.5055 2.3920 27 9 -0.5382 -1.5166 1.2488 28 9 -0.3283 -3.7917 1.2497 29 1 -0.4850 0.8400 -0.0004 30 1 3.0965 -3.4864 0.3575 31 1 2.4498 -6.7005 -0.8451 32 1 4.2668 -4.7911 0.3787 33 1 5.6258 -5.2669 2.2467 34 1 5.6573 -7.0149 2.5869 35 1 8.0888 -5.2085 2.1954 36 1 7.5335 -5.9076 3.7371 37 1 9.3987 -7.2298 2.7155 38 1 7.9021 -8.1822 2.8667 39 1 8.8875 -6.7623 0.3491 40 1 8.8998 -8.5192 0.6355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477101739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:36 Heat of formation + Delta-G solvation = -234.050349 kcal Electronic energy + Delta-G solvation = -30939.156019 eV Core-core repulsion = 25954.407214 eV Total energy + Delta-G solvation = -4984.748805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.39300 -48.02601 -47.70350 -41.82363 -40.85562 -39.46650 -36.89079 -36.63085 -34.66420 -34.39622 -33.24425 -31.36926 -29.99438 -26.65580 -26.57097 -24.87434 -23.98812 -22.52839 -22.05767 -21.24477 -20.72072 -19.12850 -18.98472 -18.73196 -18.61706 -17.99723 -17.32500 -17.17985 -16.83164 -16.70930 -16.38547 -16.20858 -15.84399 -15.50966 -15.33557 -15.11623 -14.93931 -14.71514 -14.54201 -14.43222 -14.27090 -14.01386 -13.88016 -13.81222 -13.61252 -13.09768 -12.82998 -12.64195 -12.59619 -12.48502 -12.21582 -12.17212 -11.92920 -11.72105 -11.55155 -11.38560 -10.95931 -10.68862 -10.49571 -10.29526 -9.47678 -8.18948 -6.50202 0.58461 1.24532 1.50592 1.52010 1.64193 1.83504 1.94374 2.39965 2.55271 2.71600 2.97432 3.26727 3.71216 3.74716 3.82375 3.88965 3.94480 4.03716 4.06665 4.19215 4.21851 4.52120 4.66980 4.80493 4.82377 4.88917 5.05632 5.13126 5.20845 5.22509 5.25034 5.38799 5.41441 5.65694 5.70466 6.04974 6.25240 6.53613 6.62768 7.13666 7.21673 7.35715 8.73936 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.003284 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.922246 B = 8524.016267 C = 9448.441469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.249 1.249 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.268 3.732 10 H 0.052 0.948 11 N -0.711 5.711 12 C 0.709 3.291 13 O -0.604 6.604 14 N -0.528 5.528 15 N -0.509 5.509 16 C 0.520 3.480 17 O -0.561 6.561 18 C 0.092 3.908 19 H 0.125 0.875 20 C -0.150 4.150 21 C -0.119 4.119 22 C -0.158 4.158 23 C 0.053 3.947 24 O -0.389 6.389 25 C 0.411 3.589 26 F -0.201 7.201 27 F -0.150 7.150 28 F -0.220 7.220 29 H 0.268 0.732 30 H 0.408 0.592 31 H 0.440 0.560 32 H 0.435 0.565 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.528 -6.727 5.444 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.595 4.595 8 H 0.118 0.882 9 C 0.161 3.839 10 H 0.070 0.930 11 N -0.367 5.367 12 C 0.408 3.592 13 O -0.480 6.480 14 N -0.284 5.284 15 N -0.264 5.264 16 C 0.307 3.693 17 O -0.436 6.436 18 C 0.029 3.971 19 H 0.142 0.858 20 C -0.188 4.188 21 C -0.156 4.156 22 C -0.196 4.196 23 C -0.023 4.023 24 O -0.308 6.308 25 C 0.355 3.645 26 F -0.183 7.183 27 F -0.131 7.131 28 F -0.202 7.202 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.285 0.715 32 H 0.280 0.720 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.217 -7.498 4.782 20.272 hybrid contribution -0.124 0.747 0.495 0.905 sum 18.094 -6.751 5.277 20.020 Atomic orbital electron populations 1.70541 1.07601 1.28146 1.44571 1.25993 0.95835 1.03701 0.93467 0.85097 0.79414 0.77373 0.77341 1.17256 1.20809 1.20985 1.21249 0.94801 0.87745 1.55716 0.88173 1.19328 0.88347 0.86281 0.89973 0.93030 1.44946 1.17525 1.08807 1.65392 1.15876 0.83235 0.80701 0.79345 1.91007 1.20009 1.82161 1.54835 1.44383 1.02659 1.14472 1.66900 1.44773 1.02739 1.15833 1.63030 1.21129 0.86802 0.82779 0.78571 1.90739 1.78690 1.26699 1.47517 1.21826 0.87138 0.90713 0.97390 0.85817 1.22265 1.00392 1.03815 0.92348 1.21622 0.93299 0.98351 1.02353 1.22228 1.02432 0.98530 0.96367 1.22934 0.81183 1.03901 0.94233 1.88008 1.25089 1.35519 1.82136 1.23359 0.80971 0.72387 0.87822 1.92987 1.74049 1.96137 1.55097 1.93383 1.68971 1.54463 1.96302 1.93072 1.81671 1.48449 1.97017 0.92194 0.75470 0.71462 0.72011 0.88075 0.91853 0.89405 0.89921 0.88511 0.92166 0.90869 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.43 9.50 21.45 0.20 -46.23 16 2 C 0.02 0.75 5.20 84.65 0.44 1.19 16 3 Si 0.98 37.80 29.54 68.60 2.03 39.83 16 4 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -25.85 8.46 25.60 0.22 -25.64 16 8 H 0.10 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.27 12.61 2.21 44.24 0.10 12.71 16 10 H 0.05 2.83 7.58 -2.39 -0.02 2.82 16 11 N -0.71 -26.29 4.95 -461.41 -2.28 -28.57 16 12 C 0.71 27.35 8.21 179.06 1.47 28.82 16 13 O -0.60 -28.91 15.75 -3.98 -0.06 -28.98 16 14 N -0.53 -16.20 6.26 -184.75 -1.16 -17.36 16 15 N -0.51 -11.56 6.22 -173.53 -1.08 -12.64 16 16 C 0.52 12.61 7.30 87.66 0.64 13.25 16 17 O -0.56 -18.89 16.35 15.95 0.26 -18.63 16 18 C 0.09 1.51 3.05 29.88 0.09 1.60 16 19 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 20 C -0.15 -1.89 5.37 30.69 0.16 -1.73 16 21 C -0.12 -1.01 6.03 30.71 0.19 -0.82 16 22 C -0.16 -1.47 6.14 30.69 0.19 -1.28 16 23 C 0.05 0.63 6.84 72.02 0.49 1.12 16 24 O -0.39 -8.01 9.94 -129.99 -1.29 -9.30 16 25 C 0.41 20.32 2.81 71.98 0.20 20.52 16 26 F -0.20 -9.16 16.94 44.97 0.76 -8.39 16 27 F -0.15 -8.16 12.91 44.97 0.58 -7.58 16 28 F -0.22 -11.08 15.67 44.97 0.70 -10.38 16 29 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.41 11.65 6.46 -92.71 -0.60 11.05 16 31 H 0.44 13.86 8.10 -213.32 -1.73 12.14 16 32 H 0.44 7.19 6.55 -213.32 -1.40 5.80 16 33 H 0.10 0.92 7.99 -2.39 -0.02 0.90 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.59 344.83 0.26 -71.32 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -2.59 Total: 27.16 kcal Atomic # 6 Polarization: 45.55 SS G_CDS: 4.19 Total: 49.74 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -4.32 Total: -104.80 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -1.09 Total: -56.91 kcal Atomic # 9 Polarization: -28.39 SS G_CDS: 2.05 Total: -26.35 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -71.59 0.26 -71.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.728 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds