Wall clock time and date at job start Tue Mar 31 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99734 * 2 1 4 4 H 1.48510 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47222 * 299.99552 * 3 2 1 6 6 H 1.48499 * 109.47270 * 59.99904 * 3 2 1 7 7 C 1.37872 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00334 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47042 * 299.99982 * 9 7 2 11 11 N 1.46504 * 109.47198 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99854 * 154.99672 * 11 9 7 13 13 O 1.21593 * 119.99953 * 0.02562 * 12 11 9 14 14 N 1.34773 * 120.00097 * 180.27545 * 12 11 9 15 15 N 1.40105 * 119.99844 * 359.72967 * 14 12 11 16 16 C 1.34781 * 119.99635 * 179.97438 * 15 14 12 17 17 O 1.21273 * 120.00186 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99493 * 179.97438 * 16 15 14 19 19 H 1.08996 * 109.47745 * 304.98163 * 18 16 15 20 20 C 1.53093 * 109.47716 * 65.00295 * 18 16 15 21 21 C 1.53179 * 109.15870 * 177.58827 * 20 18 16 22 22 C 1.53182 * 109.03935 * 303.02010 * 21 20 18 23 23 C 1.53093 * 109.16150 * 56.98152 * 22 21 20 24 24 O 1.42903 * 109.47731 * 184.94712 * 18 16 15 25 25 C 1.52997 * 109.47132 * 59.99764 * 9 7 2 26 26 F 1.39898 * 109.47297 * 180.02562 * 25 9 7 27 27 F 1.39899 * 109.47209 * 300.00306 * 25 9 7 28 28 F 1.39909 * 109.47143 * 60.00286 * 25 9 7 29 29 H 0.96993 * 120.00125 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00410 * 335.00397 * 11 9 7 31 31 H 0.96998 * 120.00525 * 179.72346 * 14 12 11 32 32 H 0.96990 * 119.99929 * 0.02562 * 15 14 12 33 33 H 1.08992 * 109.52653 * 297.49173 * 20 18 16 34 34 H 1.08999 * 109.51967 * 57.68813 * 20 18 16 35 35 H 1.09003 * 109.54257 * 62.88637 * 21 20 18 36 36 H 1.08995 * 109.54477 * 183.15372 * 21 20 18 37 37 H 1.09002 * 109.52414 * 176.88626 * 22 21 20 38 38 H 1.08996 * 109.52192 * 297.01679 * 22 21 20 39 39 H 1.09002 * 109.48503 * 62.37256 * 23 22 21 40 40 H 1.08999 * 109.48081 * 182.41453 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2032 -3.6127 0.0005 12 6 1.8371 -4.8123 0.4939 13 8 0.7164 -4.9704 0.9385 14 7 2.7146 -5.8351 0.4990 15 7 4.0057 -5.6529 -0.0137 16 6 4.8835 -6.6757 -0.0081 17 8 4.5556 -7.7538 0.4403 18 6 6.2720 -6.4799 -0.5602 19 1 6.2075 -6.1080 -1.5827 20 6 7.0272 -5.4673 0.3048 21 6 8.4562 -5.3191 -0.2266 22 6 9.1312 -6.6941 -0.2353 23 6 8.2948 -7.6592 -1.0794 24 8 6.9693 -7.7273 -0.5496 25 6 0.3719 -2.5805 -1.2490 26 9 -0.3280 -3.7918 -1.2487 27 9 -0.5372 -1.5171 -1.2496 28 9 1.1767 -2.5066 -2.3911 29 1 -0.4850 0.8400 -0.0004 30 1 3.0970 -3.4866 -0.3544 31 1 2.4525 -6.6974 0.8577 32 1 4.2680 -4.7907 -0.3720 33 1 6.5210 -4.5030 0.2625 34 1 7.0567 -5.8195 1.3359 35 1 8.4286 -4.9200 -1.2406 36 1 9.0164 -4.6419 0.4180 37 1 10.1297 -6.6070 -0.6637 38 1 9.2042 -7.0705 0.7850 39 1 8.2569 -7.3028 -2.1088 40 1 8.7476 -8.6504 -1.0540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477101741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:42 Heat of formation + Delta-G solvation = -234.080723 kcal Electronic energy + Delta-G solvation = -30903.196792 eV Core-core repulsion = 25918.446670 eV Total energy + Delta-G solvation = -4984.750122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.39243 -48.02789 -47.70211 -41.82332 -40.85403 -39.46588 -36.89092 -36.62996 -34.65964 -34.39475 -33.24322 -31.36735 -29.99378 -26.65440 -26.57080 -24.86957 -23.98813 -22.52777 -22.05747 -21.24072 -20.72029 -19.12877 -18.98456 -18.72812 -18.61899 -17.99922 -17.34768 -17.14055 -16.84268 -16.71258 -16.42676 -16.07912 -15.95974 -15.46632 -15.34839 -15.10493 -14.94316 -14.69645 -14.55892 -14.43400 -14.27063 -14.01639 -13.89359 -13.79189 -13.60698 -13.10001 -12.82167 -12.65023 -12.60273 -12.47143 -12.21385 -12.16831 -11.92462 -11.72012 -11.55097 -11.38224 -10.95920 -10.68753 -10.49467 -10.29464 -9.47651 -8.18905 -6.50089 0.58494 1.24620 1.50676 1.52013 1.64230 1.83717 1.94148 2.40025 2.55260 2.71616 2.97525 3.26720 3.71401 3.75244 3.82552 3.88949 3.94857 4.03900 4.06915 4.19331 4.21982 4.52384 4.67354 4.80531 4.83075 4.89439 5.06191 5.13610 5.21146 5.22768 5.25073 5.38875 5.41916 5.65790 5.70491 6.04954 6.25232 6.53690 6.62803 7.13707 7.21758 7.35751 8.74079 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.003344 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.409839 B = 8372.366266 C = 9681.737847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.984 3.016 4 H -0.249 1.249 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.268 3.732 10 H 0.052 0.948 11 N -0.711 5.711 12 C 0.709 3.291 13 O -0.605 6.605 14 N -0.528 5.528 15 N -0.509 5.509 16 C 0.521 3.479 17 O -0.561 6.561 18 C 0.091 3.909 19 H 0.123 0.877 20 C -0.149 4.149 21 C -0.119 4.119 22 C -0.158 4.158 23 C 0.053 3.947 24 O -0.389 6.389 25 C 0.411 3.589 26 F -0.220 7.220 27 F -0.150 7.150 28 F -0.201 7.201 29 H 0.268 0.732 30 H 0.408 0.592 31 H 0.440 0.560 32 H 0.435 0.565 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.096 -6.239 -3.833 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.172 1.172 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.119 0.881 9 C 0.161 3.839 10 H 0.070 0.930 11 N -0.367 5.367 12 C 0.408 3.592 13 O -0.480 6.480 14 N -0.284 5.284 15 N -0.264 5.264 16 C 0.307 3.693 17 O -0.436 6.436 18 C 0.029 3.971 19 H 0.140 0.860 20 C -0.187 4.187 21 C -0.156 4.156 22 C -0.195 4.195 23 C -0.023 4.023 24 O -0.308 6.308 25 C 0.354 3.646 26 F -0.202 7.202 27 F -0.131 7.131 28 F -0.183 7.183 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.285 0.715 32 H 0.280 0.720 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.778 -7.015 -3.191 20.298 hybrid contribution -0.074 0.784 -0.367 0.869 sum 18.704 -6.232 -3.559 20.033 Atomic orbital electron populations 1.70541 1.07609 1.28146 1.44589 1.25994 0.95833 1.03707 0.93471 0.85098 0.79437 0.77370 0.77329 1.17209 1.21007 1.20819 1.21250 0.94812 0.87724 1.55691 0.88140 1.19331 0.88356 0.86290 0.89948 0.93015 1.44946 1.17488 1.08805 1.65425 1.15880 0.83250 0.80694 0.79341 1.91010 1.19978 1.82127 1.54905 1.44381 1.02534 1.14679 1.66814 1.44773 1.02529 1.16088 1.62991 1.21126 0.86632 0.82721 0.78788 1.90736 1.78904 1.26742 1.47252 1.21834 0.86501 0.87134 1.01669 0.86008 1.22262 0.97936 0.99003 0.99521 1.21626 0.93611 0.97315 1.03097 1.22227 1.00444 0.95715 1.01155 1.22935 0.80486 1.01734 0.97124 1.88010 1.28622 1.29183 1.84953 1.23372 0.80960 0.72388 0.87845 1.93072 1.81626 1.48497 1.97015 1.93383 1.68958 1.54479 1.96307 1.92989 1.74000 1.96140 1.55161 0.92199 0.75468 0.71464 0.72014 0.87936 0.91699 0.89519 0.89816 0.88546 0.92084 0.90977 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.45 9.50 21.45 0.20 -46.24 16 2 C 0.02 0.75 5.20 84.65 0.44 1.19 16 3 Si 0.98 37.75 29.54 68.60 2.03 39.78 16 4 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.56 -25.80 8.46 25.60 0.22 -25.58 16 8 H 0.10 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.27 12.61 2.21 44.24 0.10 12.70 16 10 H 0.05 2.84 7.58 -2.39 -0.02 2.82 16 11 N -0.71 -26.27 4.95 -461.40 -2.28 -28.56 16 12 C 0.71 27.34 8.21 179.06 1.47 28.81 16 13 O -0.60 -28.91 15.75 -4.01 -0.06 -28.98 16 14 N -0.53 -16.19 6.26 -184.75 -1.16 -17.35 16 15 N -0.51 -11.55 6.22 -173.53 -1.08 -12.63 16 16 C 0.52 12.61 7.30 87.66 0.64 13.25 16 17 O -0.56 -18.89 16.35 15.98 0.26 -18.62 16 18 C 0.09 1.50 3.05 29.88 0.09 1.59 16 19 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 20 C -0.15 -1.81 5.37 30.69 0.16 -1.65 16 21 C -0.12 -0.98 6.03 30.72 0.19 -0.80 16 22 C -0.16 -1.44 6.14 30.69 0.19 -1.25 16 23 C 0.05 0.63 6.84 72.01 0.49 1.12 16 24 O -0.39 -8.04 9.94 -129.99 -1.29 -9.33 16 25 C 0.41 20.34 2.81 71.98 0.20 20.54 16 26 F -0.22 -11.10 15.67 44.97 0.70 -10.40 16 27 F -0.15 -8.17 12.91 44.97 0.58 -7.59 16 28 F -0.20 -9.20 16.94 44.97 0.76 -8.43 16 29 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.41 11.64 6.46 -92.71 -0.60 11.04 16 31 H 0.44 13.86 8.10 -213.32 -1.73 12.13 16 32 H 0.44 7.18 6.54 -213.33 -1.40 5.79 16 33 H 0.10 0.87 7.98 -2.39 -0.02 0.85 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -71.59 344.83 0.26 -71.33 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -2.59 Total: 27.10 kcal Atomic # 6 Polarization: 45.73 SS G_CDS: 4.19 Total: 49.92 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.32 Total: -104.78 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -1.09 Total: -56.93 kcal Atomic # 9 Polarization: -28.46 SS G_CDS: 2.05 Total: -26.42 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -71.59 0.26 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.752 kcal (2) G-P(sol) polarization free energy of solvation -71.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds