Wall clock time and date at job start Tue Mar 31 2020 22:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00081 * 2 1 4 4 H 1.48504 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46926 * 300.00001 * 3 2 1 6 6 H 1.48496 * 109.47394 * 59.99749 * 3 2 1 7 7 C 1.37874 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99920 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47111 * 299.99969 * 9 7 2 11 11 N 1.46507 * 109.47139 * 179.97438 * 9 7 2 12 12 C 1.34772 * 119.99927 * 154.99857 * 11 9 7 13 13 O 1.21594 * 120.00111 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99940 * 179.97438 * 12 11 9 15 15 N 1.40101 * 120.00150 * 0.02562 * 14 12 11 16 16 C 1.34771 * 119.99803 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00590 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99568 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.49097 * 54.96985 * 18 16 15 20 20 C 1.53087 * 109.48163 * 294.93911 * 18 16 15 21 21 C 1.53186 * 109.16665 * 182.40725 * 20 18 16 22 22 C 1.53181 * 109.02951 * 56.98173 * 21 20 18 23 23 C 1.53090 * 109.16481 * 303.01710 * 22 21 20 24 24 O 1.42905 * 109.48102 * 174.99554 * 18 16 15 25 25 C 1.52999 * 109.47132 * 60.00269 * 9 7 2 26 26 F 1.39897 * 109.47248 * 180.02562 * 25 9 7 27 27 F 1.39905 * 109.46745 * 299.99810 * 25 9 7 28 28 F 1.39893 * 109.47395 * 59.99537 * 25 9 7 29 29 H 0.96996 * 120.00001 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99589 * 335.00491 * 11 9 7 31 31 H 0.97002 * 119.99611 * 179.97438 * 14 12 11 32 32 H 0.96998 * 119.99703 * 359.97438 * 15 14 12 33 33 H 1.09001 * 109.52122 * 62.50489 * 20 18 16 34 34 H 1.08996 * 109.52817 * 302.31577 * 20 18 16 35 35 H 1.08997 * 109.53990 * 297.12206 * 21 20 18 36 36 H 1.08993 * 109.61724 * 176.88942 * 21 20 18 37 37 H 1.09007 * 109.52008 * 183.11801 * 22 21 20 38 38 H 1.08996 * 109.52389 * 62.92673 * 22 21 20 39 39 H 1.08998 * 109.48371 * 297.63244 * 23 22 21 40 40 H 1.09004 * 109.48242 * 177.59100 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 7 2.2030 -3.6127 0.0015 12 6 1.8373 -4.8121 0.4956 13 8 0.7170 -4.9701 0.9411 14 7 2.7130 -5.8366 0.4949 15 7 4.0036 -5.6547 -0.0190 16 6 4.8790 -6.6795 -0.0201 17 8 4.5498 -7.7588 0.4241 18 6 6.2670 -6.4839 -0.5734 19 1 6.7446 -5.6438 -0.0691 20 6 6.1825 -6.1970 -2.0748 21 6 7.5991 -6.0592 -2.6410 22 6 8.3852 -7.3383 -2.3369 23 6 8.3848 -7.5811 -0.8254 24 8 7.0369 -7.6686 -0.3588 25 6 0.3709 -2.5811 -1.2472 26 9 -0.3290 -3.7923 -1.2458 27 9 -0.5382 -1.5177 -1.2475 28 9 1.1747 -2.5076 -2.3898 29 1 -0.4850 0.8400 0.0004 30 1 3.0966 -3.4867 -0.3542 31 1 2.4498 -6.6997 0.8509 32 1 4.2668 -4.7915 -0.3746 33 1 5.6332 -5.2698 -2.2380 34 1 5.6689 -7.0185 -2.5743 35 1 8.0958 -5.2071 -2.1772 36 1 7.5492 -5.9097 -3.7195 37 1 9.4113 -7.2273 -2.6877 38 1 7.9161 -8.1828 -2.8417 39 1 8.8899 -6.7554 -0.3244 40 1 8.9063 -8.5130 -0.6067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477101742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:45 Heat of formation + Delta-G solvation = -210.546006 kcal Electronic energy + Delta-G solvation = -30936.685168 eV Core-core repulsion = 25952.955587 eV Total energy + Delta-G solvation = -4983.729580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.41415 -46.06918 -45.67611 -40.72089 -39.63182 -38.45751 -35.58273 -34.86991 -34.04455 -32.64411 -32.34023 -30.31630 -28.26484 -25.92780 -24.66937 -24.30513 -22.26567 -21.51567 -20.66202 -20.41113 -19.29771 -17.95040 -17.24383 -16.89608 -16.71321 -16.60985 -16.41378 -15.96362 -15.70319 -15.25924 -15.07380 -14.86005 -14.75030 -14.54880 -14.29435 -13.96455 -13.36978 -13.12886 -13.06617 -12.97859 -12.61915 -12.46337 -12.36291 -12.06733 -11.94244 -11.88776 -11.65329 -11.45389 -11.39819 -11.23110 -10.94516 -10.89429 -10.85025 -10.52871 -10.17976 -9.92817 -9.78265 -9.75841 -8.84472 -8.57989 -8.16462 -6.32505 -4.57720 1.72730 2.28386 3.11648 3.16659 3.21263 3.25389 3.49397 3.56431 4.07266 4.12587 4.33677 4.41125 4.49311 4.53140 4.59309 4.70457 4.84967 5.00599 5.08195 5.14692 5.29094 5.37130 5.51147 5.61815 5.64256 5.73429 5.78832 5.86347 6.10505 6.37045 6.49094 6.76194 6.90126 7.08563 7.35727 7.39600 7.53207 7.85806 8.36398 8.48012 8.85139 9.10826 10.59036 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.003284 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.298899 B = 8525.390375 C = 9452.616750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.260 3.740 10 H 0.089 0.911 11 N -0.723 5.723 12 C 0.708 3.292 13 O -0.560 6.560 14 N -0.536 5.536 15 N -0.522 5.522 16 C 0.520 3.480 17 O -0.516 6.516 18 C 0.087 3.913 19 H 0.091 0.909 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.160 4.160 23 C 0.060 3.940 24 O -0.353 6.353 25 C 0.415 3.585 26 F -0.216 7.216 27 F -0.136 7.136 28 F -0.210 7.210 29 H 0.269 0.731 30 H 0.389 0.611 31 H 0.438 0.562 32 H 0.422 0.578 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.341 -7.847 -4.596 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.154 3.846 10 H 0.107 0.893 11 N -0.377 5.377 12 C 0.407 3.593 13 O -0.432 6.432 14 N -0.295 5.295 15 N -0.275 5.275 16 C 0.304 3.696 17 O -0.389 6.389 18 C 0.024 3.976 19 H 0.109 0.891 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.198 4.198 23 C -0.017 4.017 24 O -0.271 6.271 25 C 0.359 3.641 26 F -0.198 7.198 27 F -0.117 7.117 28 F -0.192 7.192 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.284 0.716 32 H 0.263 0.737 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.946 -8.604 -3.911 17.684 hybrid contribution 0.838 1.205 -0.731 1.639 sum 15.784 -7.399 -4.641 18.039 Atomic orbital electron populations 1.70404 1.05873 1.27443 1.43238 1.25075 0.95168 1.00145 0.93956 0.86137 0.79685 0.81883 0.77970 1.19430 1.20534 1.20505 1.20866 0.93758 0.87928 1.56600 0.90387 1.19718 0.88172 0.84717 0.91951 0.89334 1.45318 1.17308 1.09863 1.65238 1.15898 0.83428 0.80288 0.79687 1.91041 1.17723 1.81267 1.53159 1.44713 1.01442 1.15581 1.67764 1.44697 1.04467 1.15002 1.63307 1.20267 0.85769 0.83732 0.79809 1.90754 1.77796 1.24857 1.45462 1.21695 0.89520 0.90179 0.96208 0.89098 1.22228 0.98928 1.03829 0.93911 1.21590 0.94537 0.97866 1.01869 1.22238 1.01316 0.98920 0.97282 1.22696 0.82827 1.02728 0.93430 1.88058 1.23013 1.34560 1.81467 1.23140 0.80977 0.72918 0.87059 1.93082 1.81421 1.48327 1.96950 1.93411 1.68341 1.53748 1.96181 1.92982 1.74443 1.96197 1.55543 0.92020 0.77735 0.71599 0.73685 0.89691 0.89963 0.91205 0.90644 0.90534 0.90749 0.92740 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.05 9.50 55.43 0.53 -21.52 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.55 -13.24 8.46 -34.44 -0.29 -13.54 16 8 H 0.08 1.72 7.74 -52.48 -0.41 1.32 16 9 C 0.26 6.13 2.21 -69.08 -0.15 5.98 16 10 H 0.09 2.35 7.58 -51.93 -0.39 1.96 16 11 N -0.72 -13.73 4.95 -59.81 -0.30 -14.03 16 12 C 0.71 13.70 8.21 -86.92 -0.71 12.99 16 13 O -0.56 -13.09 15.75 5.28 0.08 -13.00 16 14 N -0.54 -8.37 6.26 27.63 0.17 -8.20 16 15 N -0.52 -6.37 6.22 31.22 0.19 -6.17 16 16 C 0.52 6.63 7.30 -10.99 -0.08 6.54 16 17 O -0.52 -8.70 16.35 -14.29 -0.23 -8.93 16 18 C 0.09 0.81 3.05 -27.84 -0.09 0.73 16 19 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 20 C -0.15 -1.14 5.37 -26.59 -0.14 -1.28 16 21 C -0.12 -0.72 6.03 -26.54 -0.16 -0.88 16 22 C -0.16 -0.95 6.14 -26.59 -0.16 -1.11 16 23 C 0.06 0.42 6.84 37.20 0.25 0.68 16 24 O -0.35 -3.90 9.94 -55.09 -0.55 -4.45 16 25 C 0.42 10.24 2.81 37.16 0.10 10.35 16 26 F -0.22 -5.37 15.67 2.25 0.04 -5.33 16 27 F -0.14 -3.64 12.91 2.25 0.03 -3.61 16 28 F -0.21 -4.90 16.94 2.25 0.04 -4.86 16 29 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.39 6.02 6.46 -40.82 -0.26 5.76 16 31 H 0.44 6.88 8.10 -182.60 -1.48 5.40 16 32 H 0.42 4.07 6.55 -182.60 -1.20 2.88 16 33 H 0.08 0.53 7.99 -51.93 -0.41 0.12 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -32.48 344.84 -8.01 -40.49 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.67 Total: 8.38 kcal Atomic # 6 Polarization: 23.51 SS G_CDS: -1.52 Total: 21.99 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.60 Total: -49.92 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.70 Total: -26.38 kcal Atomic # 9 Polarization: -13.90 SS G_CDS: 0.10 Total: -13.80 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.48 -8.01 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.053 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds