Wall clock time and date at job start Tue Mar 31 2020 22:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00081 * 2 1 4 4 H 1.48504 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46926 * 300.00001 * 3 2 1 6 6 H 1.48496 * 109.47394 * 59.99749 * 3 2 1 7 7 C 1.37874 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99920 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47111 * 299.99969 * 9 7 2 11 11 N 1.46507 * 109.47139 * 179.97438 * 9 7 2 12 12 C 1.34772 * 119.99927 * 154.99857 * 11 9 7 13 13 O 1.21594 * 120.00111 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99940 * 179.97438 * 12 11 9 15 15 N 1.40101 * 120.00150 * 0.02562 * 14 12 11 16 16 C 1.34771 * 119.99803 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00590 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99568 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.49097 * 54.96985 * 18 16 15 20 20 C 1.53087 * 109.48163 * 294.93911 * 18 16 15 21 21 C 1.53186 * 109.16665 * 182.40725 * 20 18 16 22 22 C 1.53181 * 109.02951 * 56.98173 * 21 20 18 23 23 C 1.53090 * 109.16481 * 303.01710 * 22 21 20 24 24 O 1.42905 * 109.48102 * 174.99554 * 18 16 15 25 25 C 1.52999 * 109.47132 * 60.00269 * 9 7 2 26 26 F 1.39897 * 109.47248 * 180.02562 * 25 9 7 27 27 F 1.39905 * 109.46745 * 299.99810 * 25 9 7 28 28 F 1.39893 * 109.47395 * 59.99537 * 25 9 7 29 29 H 0.96996 * 120.00001 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99589 * 335.00491 * 11 9 7 31 31 H 0.97002 * 119.99611 * 179.97438 * 14 12 11 32 32 H 0.96998 * 119.99703 * 359.97438 * 15 14 12 33 33 H 1.09001 * 109.52122 * 62.50489 * 20 18 16 34 34 H 1.08996 * 109.52817 * 302.31577 * 20 18 16 35 35 H 1.08997 * 109.53990 * 297.12206 * 21 20 18 36 36 H 1.08993 * 109.61724 * 176.88942 * 21 20 18 37 37 H 1.09007 * 109.52008 * 183.11801 * 22 21 20 38 38 H 1.08996 * 109.52389 * 62.92673 * 22 21 20 39 39 H 1.08998 * 109.48371 * 297.63244 * 23 22 21 40 40 H 1.09004 * 109.48242 * 177.59100 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 7 2.2030 -3.6127 0.0015 12 6 1.8373 -4.8121 0.4956 13 8 0.7170 -4.9701 0.9411 14 7 2.7130 -5.8366 0.4949 15 7 4.0036 -5.6547 -0.0190 16 6 4.8790 -6.6795 -0.0201 17 8 4.5498 -7.7588 0.4241 18 6 6.2670 -6.4839 -0.5734 19 1 6.7446 -5.6438 -0.0691 20 6 6.1825 -6.1970 -2.0748 21 6 7.5991 -6.0592 -2.6410 22 6 8.3852 -7.3383 -2.3369 23 6 8.3848 -7.5811 -0.8254 24 8 7.0369 -7.6686 -0.3588 25 6 0.3709 -2.5811 -1.2472 26 9 -0.3290 -3.7923 -1.2458 27 9 -0.5382 -1.5177 -1.2475 28 9 1.1747 -2.5076 -2.3898 29 1 -0.4850 0.8400 0.0004 30 1 3.0966 -3.4867 -0.3542 31 1 2.4498 -6.6997 0.8509 32 1 4.2668 -4.7915 -0.3746 33 1 5.6332 -5.2698 -2.2380 34 1 5.6689 -7.0185 -2.5743 35 1 8.0958 -5.2071 -2.1772 36 1 7.5492 -5.9097 -3.7195 37 1 9.4113 -7.2273 -2.6877 38 1 7.9161 -8.1828 -2.8417 39 1 8.8899 -6.7554 -0.3244 40 1 8.9063 -8.5130 -0.6067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477101742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:45 Heat of formation + Delta-G solvation = -234.058514 kcal Electronic energy + Delta-G solvation = -30937.704747 eV Core-core repulsion = 25952.955587 eV Total energy + Delta-G solvation = -4984.749159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.39259 -48.02810 -47.70075 -41.82402 -40.85488 -39.46683 -36.89120 -36.63048 -34.66287 -34.39677 -33.24452 -31.36948 -29.99449 -26.65560 -26.57086 -24.87335 -23.98806 -22.52892 -22.05767 -21.24541 -20.72065 -19.12833 -18.98494 -18.73169 -18.61696 -17.99718 -17.32459 -17.17920 -16.83168 -16.70911 -16.38519 -16.20868 -15.84321 -15.50988 -15.33455 -15.11601 -14.93942 -14.71537 -14.54143 -14.43245 -14.27040 -14.01373 -13.87964 -13.81259 -13.61301 -13.09777 -12.82989 -12.64188 -12.59582 -12.48512 -12.21550 -12.17179 -11.92873 -11.72067 -11.55130 -11.38516 -10.95952 -10.68892 -10.49617 -10.29521 -9.47670 -8.18912 -6.50206 0.58475 1.24553 1.50597 1.52002 1.64198 1.83382 1.94480 2.39974 2.55243 2.71605 2.97464 3.26697 3.71277 3.74745 3.82535 3.88973 3.94464 4.03681 4.06696 4.19168 4.21812 4.52129 4.66950 4.80543 4.82389 4.88977 5.05655 5.13065 5.20848 5.22496 5.24999 5.38809 5.41476 5.65700 5.70471 6.04959 6.25227 6.53605 6.62769 7.13674 7.21692 7.35707 8.73965 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.003284 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.298899 B = 8525.390375 C = 9452.616750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.249 1.249 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.268 3.732 10 H 0.052 0.948 11 N -0.711 5.711 12 C 0.709 3.291 13 O -0.604 6.604 14 N -0.528 5.528 15 N -0.509 5.509 16 C 0.521 3.479 17 O -0.561 6.561 18 C 0.092 3.908 19 H 0.124 0.876 20 C -0.150 4.150 21 C -0.119 4.119 22 C -0.158 4.158 23 C 0.053 3.947 24 O -0.389 6.389 25 C 0.411 3.589 26 F -0.220 7.220 27 F -0.150 7.150 28 F -0.201 7.201 29 H 0.268 0.732 30 H 0.408 0.592 31 H 0.440 0.560 32 H 0.435 0.565 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.544 -6.725 -5.405 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.118 0.882 9 C 0.161 3.839 10 H 0.070 0.930 11 N -0.367 5.367 12 C 0.408 3.592 13 O -0.480 6.480 14 N -0.284 5.284 15 N -0.264 5.264 16 C 0.307 3.693 17 O -0.436 6.436 18 C 0.029 3.971 19 H 0.142 0.858 20 C -0.188 4.188 21 C -0.156 4.156 22 C -0.196 4.196 23 C -0.023 4.023 24 O -0.308 6.308 25 C 0.355 3.645 26 F -0.202 7.202 27 F -0.131 7.131 28 F -0.183 7.183 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.285 0.715 32 H 0.280 0.720 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.232 -7.496 -4.747 20.276 hybrid contribution -0.121 0.748 -0.490 0.903 sum 18.111 -6.748 -5.237 20.024 Atomic orbital electron populations 1.70539 1.07602 1.28145 1.44571 1.25991 0.95835 1.03701 0.93467 0.85097 0.79415 0.77375 0.77340 1.17255 1.20987 1.20809 1.21250 0.94801 0.87743 1.55720 0.88173 1.19329 0.88346 0.86278 0.89976 0.93031 1.44945 1.17525 1.08847 1.65349 1.15879 0.83243 0.80695 0.79345 1.91011 1.19970 1.82158 1.54880 1.44382 1.02681 1.14489 1.66861 1.44771 1.02683 1.15920 1.63000 1.21123 0.86812 0.82790 0.78548 1.90737 1.78753 1.26684 1.47463 1.21827 0.87087 0.90752 0.97404 0.85820 1.22264 1.00384 1.03828 0.92337 1.21622 0.93270 0.98361 1.02375 1.22230 1.02424 0.98546 0.96354 1.22936 0.81133 1.03898 0.94291 1.88010 1.24904 1.35662 1.82183 1.23357 0.80972 0.72389 0.87820 1.93072 1.81625 1.48498 1.97012 1.93385 1.68963 1.54475 1.96306 1.92985 1.74040 1.96138 1.55093 0.92194 0.75469 0.71463 0.72012 0.88074 0.91847 0.89419 0.89915 0.88505 0.92163 0.90875 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.44 9.50 21.45 0.20 -46.23 16 2 C 0.02 0.76 5.20 84.65 0.44 1.20 16 3 Si 0.98 37.80 29.54 68.60 2.03 39.83 16 4 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.56 -25.86 8.46 25.60 0.22 -25.64 16 8 H 0.10 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.27 12.61 2.21 44.24 0.10 12.71 16 10 H 0.05 2.83 7.58 -2.39 -0.02 2.81 16 11 N -0.71 -26.28 4.95 -461.40 -2.28 -28.57 16 12 C 0.71 27.34 8.21 179.06 1.47 28.81 16 13 O -0.60 -28.92 15.75 -4.01 -0.06 -28.98 16 14 N -0.53 -16.20 6.26 -184.74 -1.16 -17.36 16 15 N -0.51 -11.55 6.22 -173.54 -1.08 -12.63 16 16 C 0.52 12.61 7.30 87.66 0.64 13.25 16 17 O -0.56 -18.89 16.35 15.97 0.26 -18.63 16 18 C 0.09 1.50 3.05 29.88 0.09 1.60 16 19 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 20 C -0.15 -1.89 5.37 30.69 0.16 -1.72 16 21 C -0.12 -1.01 6.03 30.72 0.19 -0.82 16 22 C -0.16 -1.46 6.14 30.68 0.19 -1.28 16 23 C 0.05 0.63 6.84 72.01 0.49 1.12 16 24 O -0.39 -8.01 9.94 -130.00 -1.29 -9.31 16 25 C 0.41 20.32 2.81 71.98 0.20 20.52 16 26 F -0.22 -11.08 15.67 44.97 0.70 -10.38 16 27 F -0.15 -8.16 12.91 44.97 0.58 -7.58 16 28 F -0.20 -9.15 16.94 44.97 0.76 -8.39 16 29 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.41 11.65 6.46 -92.71 -0.60 11.05 16 31 H 0.44 13.86 8.10 -213.32 -1.73 12.13 16 32 H 0.44 7.19 6.55 -213.32 -1.40 5.79 16 33 H 0.10 0.92 7.99 -2.39 -0.02 0.90 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -71.59 344.84 0.26 -71.33 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -2.59 Total: 27.16 kcal Atomic # 6 Polarization: 45.55 SS G_CDS: 4.19 Total: 49.74 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -4.32 Total: -104.79 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -1.09 Total: -56.91 kcal Atomic # 9 Polarization: -28.40 SS G_CDS: 2.05 Total: -26.35 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -71.59 0.26 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.733 kcal (2) G-P(sol) polarization free energy of solvation -71.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds