Wall clock time and date at job start Tue Mar 31 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86792 * 120.00383 * 2 1 4 4 H 1.48497 * 109.47343 * 239.99873 * 3 2 1 5 5 H 1.48503 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47187 * 119.99533 * 3 2 1 7 7 C 1.38957 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99819 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00122 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00202 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00278 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47226 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99990 * 180.02562 * 13 12 10 15 15 H 1.09002 * 112.84869 * 25.33402 * 14 13 12 16 16 C 1.53786 * 113.61608 * 156.52978 * 14 13 12 17 17 C 1.53783 * 87.08050 * 140.06254 * 16 14 13 18 18 H 1.08993 * 113.61424 * 220.01734 * 17 16 14 19 19 C 1.53005 * 113.61139 * 89.20025 * 17 16 14 20 20 N 1.46495 * 109.46741 * 174.99756 * 19 17 16 21 21 C 1.34780 * 119.99845 * 180.02562 * 20 19 17 22 22 O 1.21614 * 119.99649 * 0.02562 * 21 20 19 23 23 C 1.47440 * 120.00288 * 180.02562 * 21 20 19 24 24 C 1.37980 * 124.15808 * 179.72533 * 23 21 20 25 25 S 1.72097 * 104.03573 * 179.89796 * 24 23 21 26 26 N 1.56403 * 96.15454 * 0.32706 * 25 24 23 27 27 N 1.27421 * 109.87620 * 359.80002 * 26 25 24 28 28 C 1.53781 * 113.61428 * 254.13870 * 14 13 12 29 29 H 0.97005 * 119.99213 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00261 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46553 * 59.99991 * 12 10 9 32 32 H 1.08994 * 109.47173 * 300.00423 * 12 10 9 33 33 H 1.00904 * 110.99967 * 56.04919 * 13 12 10 34 34 H 1.08992 * 113.61675 * 254.61513 * 16 14 13 35 35 H 1.09005 * 113.61030 * 25.43163 * 16 14 13 36 36 H 1.08994 * 109.47390 * 295.00239 * 19 17 16 37 37 H 1.09006 * 109.46643 * 55.00304 * 19 17 16 38 38 H 0.97000 * 120.00343 * 0.02562 * 20 19 17 39 39 H 1.08011 * 127.98104 * 0.02562 * 24 23 21 40 40 H 1.08999 * 113.61567 * 334.48132 * 28 14 13 41 41 H 1.08998 * 113.61196 * 105.38486 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9796 0.0027 14 6 1.4977 -7.2709 0.0026 15 1 0.4980 -7.2101 -0.4275 16 6 2.3403 -8.4287 -0.5581 17 6 1.7474 -9.2989 0.5627 18 1 2.4691 -9.9783 1.0161 19 6 0.4410 -9.9936 0.1731 20 7 0.0211 -10.8866 1.2558 21 6 -1.1106 -11.6083 1.1335 22 8 -1.7828 -11.5185 0.1240 23 6 -1.5335 -12.5067 2.2233 24 6 -2.6765 -13.2790 2.1913 25 16 -2.6611 -14.1102 3.6981 26 7 -1.3329 -13.4752 4.2263 27 7 -0.8639 -12.6678 3.3592 28 6 1.5421 -7.9958 1.3581 29 1 -0.4849 0.8402 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6173 -4.9212 -0.8880 32 1 0.6165 -4.9201 0.8919 33 1 2.8329 -5.9122 0.7841 34 1 2.0414 -8.7417 -1.5584 35 1 3.4150 -8.2704 -0.4676 36 1 -0.3314 -9.2443 -0.0001 37 1 0.5952 -10.5734 -0.7370 38 1 0.5575 -10.9585 2.0608 39 1 -3.4103 -13.3477 1.4017 40 1 2.3988 -7.7200 1.9729 41 1 0.5991 -7.9595 1.9037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479384208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:07 Heat of formation + Delta-G solvation = -5.603423 kcal Electronic energy + Delta-G solvation = -25194.250835 eV Core-core repulsion = 21236.310595 eV Total energy + Delta-G solvation = -3957.940241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.17201 -40.91912 -40.20111 -39.67741 -36.26608 -35.83058 -34.47039 -33.27023 -33.18666 -29.50423 -28.28602 -27.51576 -26.56937 -25.90225 -24.39343 -23.33423 -21.91086 -21.19251 -20.64870 -19.96243 -19.54165 -18.03528 -17.70771 -17.22935 -17.16345 -16.88819 -16.68918 -16.37118 -16.20699 -15.99783 -15.65010 -15.61594 -15.00561 -14.59298 -14.47720 -14.19382 -13.69050 -13.63342 -13.51287 -13.25348 -13.07569 -13.04717 -12.86574 -12.66585 -12.44078 -12.15845 -12.07289 -11.55965 -11.50835 -11.37309 -11.29886 -11.19422 -11.17824 -10.92536 -10.33243 -10.20264 -10.02377 -9.21351 -8.47001 -5.96066 -0.95542 -0.06220 0.28748 0.51869 1.39763 1.41493 1.52702 1.96406 1.99171 2.04712 2.29204 2.72118 2.96922 3.20072 3.49705 3.54832 3.61658 3.68165 3.75917 3.91426 4.03873 4.28649 4.33186 4.34843 4.45247 4.51719 4.61948 4.67866 4.80012 4.90651 5.01414 5.10671 5.20641 5.28876 5.39422 5.40987 5.93390 6.16774 6.19405 6.45366 6.51052 6.59628 6.93742 7.11767 7.55528 8.10766 8.70141 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.001575 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.579659 B =17777.961370 C =18332.020899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.056 3.944 15 H 0.101 0.899 16 C -0.112 4.112 17 C -0.107 4.107 18 H 0.102 0.898 19 C 0.138 3.862 20 N -0.699 5.699 21 C 0.602 3.398 22 O -0.557 6.557 23 C -0.046 4.046 24 C -0.238 4.238 25 S 0.561 5.439 26 N -0.333 5.333 27 N -0.233 5.233 28 C -0.160 4.160 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.346 0.654 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.418 0.582 39 H 0.228 0.772 40 H 0.087 0.913 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 -31.795 6.520 33.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.303 5.303 14 C -0.053 4.053 15 H 0.119 0.881 16 C -0.150 4.150 17 C -0.126 4.126 18 H 0.120 0.880 19 C 0.015 3.985 20 N -0.349 5.349 21 C 0.384 3.616 22 O -0.435 6.435 23 C -0.194 4.194 24 C -0.395 4.395 25 S 0.697 5.303 26 N -0.314 5.314 27 N -0.102 5.102 28 C -0.199 4.199 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.255 0.745 39 H 0.245 0.755 40 H 0.106 0.894 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.367 -32.178 6.852 33.947 hybrid contribution -0.246 1.799 -0.201 1.827 sum -8.612 -30.379 6.651 32.269 Atomic orbital electron populations 1.69675 1.06855 1.29379 1.50218 1.26067 0.96571 1.02477 0.96213 0.84969 0.77742 0.76533 0.78967 1.19720 1.19454 1.19639 1.19654 0.92751 0.84078 1.50106 0.90273 1.41941 1.09323 1.04754 1.65025 1.20928 0.88283 0.86212 0.82167 1.90483 1.15854 1.87990 1.56703 1.21564 0.94175 0.88264 1.02754 1.60050 1.18537 1.00614 1.51063 1.23331 0.97884 0.87243 0.96889 0.88070 1.23014 1.00393 0.93354 0.98285 1.22312 0.96254 0.95717 0.98322 0.87956 1.21285 0.95465 0.92247 0.89482 1.45815 1.24244 1.42755 1.22130 1.16836 0.81213 0.79225 0.84333 1.90844 1.55178 1.67149 1.30364 1.22567 0.96391 1.04637 0.95833 1.29302 1.01875 1.00154 1.08125 1.81268 1.17588 1.32050 0.99430 1.78335 1.13574 1.13984 1.25467 1.71562 1.26966 1.12494 0.99183 1.23784 1.02594 0.96534 0.96994 0.91280 0.77004 0.88070 0.91810 0.83443 0.90334 0.89417 0.91337 0.90290 0.74532 0.75502 0.89442 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.22 13.05 21.67 0.28 -49.94 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.34 -19.39 9.68 84.04 0.81 -18.57 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 10 C 0.44 21.14 7.82 87.66 0.69 21.82 16 11 O -0.62 -35.07 15.78 -3.07 -0.05 -35.12 16 12 C 0.06 2.26 6.02 85.56 0.52 2.77 16 13 N -0.67 -21.00 6.24 -492.85 -3.07 -24.07 16 14 C 0.06 1.25 3.81 45.44 0.17 1.43 16 15 H 0.10 2.15 7.46 -2.39 -0.02 2.13 16 16 C -0.11 -2.05 7.47 31.12 0.23 -1.82 16 17 C -0.11 -1.55 3.94 -10.17 -0.04 -1.59 16 18 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 19 C 0.14 2.18 5.36 86.38 0.46 2.64 16 20 N -0.70 -11.27 5.55 -466.34 -2.59 -13.86 16 21 C 0.60 11.76 7.81 86.67 0.68 12.43 16 22 O -0.56 -13.96 16.80 -4.08 -0.07 -14.02 16 23 C -0.05 -0.75 6.87 41.36 0.28 -0.46 16 24 C -0.24 -2.28 11.21 67.76 0.76 -1.52 16 25 S 0.56 3.49 23.38 -56.49 -1.32 2.17 16 26 N -0.33 -5.04 12.49 37.02 0.46 -4.58 16 27 N -0.23 -4.07 11.24 -50.35 -0.57 -4.64 16 28 C -0.16 -2.87 7.26 31.21 0.23 -2.64 16 29 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 30 H 0.40 19.65 7.90 -92.70 -0.73 18.92 16 31 H 0.10 3.22 8.13 -2.39 -0.02 3.20 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.35 11.32 7.91 -89.69 -0.71 10.61 16 34 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.07 1.22 7.39 -2.39 -0.02 1.21 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.42 5.75 8.06 -92.71 -0.75 5.00 16 39 H 0.23 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.09 1.62 7.83 -2.39 -0.02 1.60 16 41 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 Total: -1.00 -75.28 370.41 -2.33 -77.61 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -1.07 Total: 38.43 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.26 Total: 14.23 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -7.11 Total: -128.65 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.12 Total: -49.15 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.32 Total: 2.17 kcal Total: -75.28 -2.33 -77.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479384208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.006 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds