Wall clock time and date at job start Tue Mar 31 2020 22:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86796 * 120.00245 * 2 1 4 4 H 1.48506 * 109.47325 * 239.99988 * 3 2 1 5 5 H 1.48503 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47233 * 119.99776 * 3 2 1 7 7 C 1.38949 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00059 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00233 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99621 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00131 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47035 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99797 * 186.11086 * 13 12 10 15 15 H 1.08999 * 109.47208 * 342.69908 * 14 13 12 16 16 C 1.52994 * 109.46957 * 222.69727 * 14 13 12 17 17 N 1.46500 * 109.47217 * 55.00069 * 16 14 13 18 18 C 1.34785 * 119.99685 * 179.97438 * 17 16 14 19 19 O 1.21599 * 120.00330 * 0.02562 * 18 17 16 20 20 C 1.47448 * 119.99634 * 179.72593 * 18 17 16 21 21 C 1.37975 * 124.15408 * 180.27832 * 20 18 17 22 22 S 1.72108 * 104.03276 * 179.97438 * 21 20 18 23 23 N 1.56402 * 96.15380 * 0.02562 * 22 21 20 24 24 N 1.27413 * 109.87705 * 359.74351 * 23 22 21 25 25 C 1.53003 * 109.47245 * 102.69673 * 14 13 12 26 26 C 1.53004 * 117.49345 * 11.53908 * 25 14 13 27 27 C 1.52996 * 117.49611 * 302.88096 * 25 14 13 28 28 H 0.97005 * 119.99901 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00138 * 359.97438 * 9 7 2 30 30 H 1.08990 * 109.47352 * 59.99689 * 12 10 9 31 31 H 1.09008 * 109.46940 * 299.99676 * 12 10 9 32 32 H 1.00897 * 110.99943 * 62.15830 * 13 12 10 33 33 H 1.08999 * 109.47564 * 294.99917 * 16 14 13 34 34 H 1.09003 * 109.47387 * 174.99985 * 16 14 13 35 35 H 0.96991 * 120.00201 * 359.97438 * 17 16 14 36 36 H 1.08000 * 127.98914 * 359.95327 * 21 20 18 37 37 H 1.08989 * 115.55207 * 157.20608 * 25 14 13 38 38 H 1.08993 * 117.50192 * 359.97438 * 26 25 14 39 39 H 1.08998 * 117.49553 * 145.02361 * 26 25 14 40 40 H 1.09002 * 117.49624 * 214.97396 * 27 25 14 41 41 H 1.08999 * 117.50353 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1982 -5.9796 0.0016 14 6 1.5038 -7.2658 -0.1438 15 1 0.4463 -7.1359 0.0865 16 6 2.1138 -8.2864 0.8190 17 7 2.0769 -7.7536 2.1832 18 6 2.5635 -8.4847 3.2056 19 8 3.0336 -9.5864 2.9957 20 6 2.5319 -7.9459 4.5778 21 6 3.0104 -8.6166 5.6845 22 16 2.7196 -7.5313 6.9882 23 7 2.0691 -6.4016 6.1240 24 7 2.0436 -6.7532 4.8996 25 6 1.6547 -7.7673 -1.5814 26 6 2.6652 -7.0486 -2.4778 27 6 1.1642 -6.8511 -2.7043 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6166 -4.9209 -0.8885 31 1 0.6173 -4.9205 0.8915 32 1 2.7675 -5.9681 0.8345 33 1 3.1473 -8.4828 0.5335 34 1 1.5425 -9.2137 0.7756 35 1 1.7023 -6.8747 2.3506 36 1 3.4626 -9.5966 5.7239 37 1 1.5343 -8.8417 -1.7196 38 1 3.2220 -6.2183 -2.0435 39 1 3.2091 -7.6501 -3.2060 40 1 0.7214 -7.3229 -3.5815 41 1 0.7335 -5.8914 -2.4189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480036919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:17 Heat of formation + Delta-G solvation = 11.793721 kcal Electronic energy + Delta-G solvation = -26572.036722 eV Core-core repulsion = 22614.850878 eV Total energy + Delta-G solvation = -3957.185844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20420 -40.77559 -40.12206 -39.08613 -36.33507 -35.96580 -34.62880 -33.31749 -33.20635 -30.92875 -28.31576 -27.74738 -25.93225 -25.25972 -23.54927 -22.97117 -21.94188 -21.11672 -20.96739 -20.29487 -19.88321 -18.21079 -17.59182 -17.37195 -17.23797 -16.93472 -16.77787 -16.39497 -16.32438 -15.85433 -15.75231 -15.45670 -15.23945 -14.81593 -14.65813 -14.09755 -13.69675 -13.62970 -13.47099 -13.14903 -13.05494 -12.87048 -12.79585 -12.42808 -12.33101 -12.13041 -12.08451 -11.63144 -11.49230 -11.30872 -11.21312 -11.01851 -10.94559 -10.78310 -10.31335 -10.30784 -10.00104 -9.34789 -8.45869 -5.94196 -0.96615 -0.06625 0.26133 0.50747 1.39221 1.40734 1.51577 1.88296 1.95999 2.07113 2.28662 2.68677 2.78584 3.10940 3.21360 3.47696 3.58445 3.68159 3.79291 4.02078 4.13184 4.23095 4.32057 4.36657 4.40669 4.43356 4.51727 4.57269 4.72609 4.88263 5.00585 5.09161 5.22617 5.41099 5.41512 5.65594 5.86529 6.06683 6.08513 6.31441 6.45377 6.61254 6.84042 7.13838 7.57753 8.13554 8.71347 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.003293 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.851987 B = 8500.090712 C =11382.202010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.062 3.938 13 N -0.670 5.670 14 C 0.108 3.892 15 H 0.079 0.921 16 C 0.119 3.881 17 N -0.710 5.710 18 C 0.609 3.391 19 O -0.548 6.548 20 C -0.050 4.050 21 C -0.232 4.232 22 S 0.563 5.437 23 N -0.337 5.337 24 N -0.240 5.240 25 C -0.136 4.136 26 C -0.172 4.172 27 C -0.178 4.178 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.344 0.656 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.409 0.591 36 H 0.235 0.765 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -21.266 10.210 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.070 4.070 13 N -0.304 5.304 14 C -0.001 4.001 15 H 0.097 0.903 16 C -0.004 4.004 17 N -0.361 5.361 18 C 0.391 3.609 19 O -0.425 6.425 20 C -0.198 4.198 21 C -0.389 4.389 22 S 0.698 5.302 23 N -0.318 5.318 24 N -0.109 5.109 25 C -0.155 4.155 26 C -0.209 4.209 27 C -0.215 4.215 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.245 0.755 36 H 0.251 0.749 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.262 -20.332 10.458 22.865 hybrid contribution -0.320 0.521 -0.359 0.709 sum -0.058 -19.811 10.098 22.236 Atomic orbital electron populations 1.69662 1.06773 1.29288 1.50369 1.25995 0.96519 1.02293 0.96336 0.85032 0.77815 0.76864 0.78890 1.19735 1.19406 1.19836 1.19603 0.92629 0.84116 1.49946 0.90482 1.41909 1.09242 1.04690 1.65207 1.20838 0.88261 0.86052 0.82142 1.90498 1.15817 1.87922 1.56390 1.21730 0.93841 0.88360 1.03071 1.59993 1.23009 1.00833 1.46520 1.21329 0.97446 0.87353 0.93993 0.90272 1.21764 1.02862 0.97352 0.78440 1.45926 1.61271 1.21370 1.07518 1.16724 0.77746 0.84077 0.82370 1.90816 1.46998 1.20421 1.84300 1.22620 1.06684 0.92538 0.97997 1.29309 1.03706 1.09478 0.96369 1.81157 1.36816 0.98083 1.14137 1.78342 1.23610 1.27257 1.02570 1.71592 1.16478 1.14086 1.08732 1.22274 1.05403 0.98307 0.89531 1.22853 0.92495 1.03462 1.02098 1.22939 0.97655 1.00705 1.00217 0.91333 0.77081 0.87652 0.91501 0.83614 0.90642 0.88364 0.75458 0.74888 0.85135 0.89684 0.88751 0.87657 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.67 5.29 -306.98 -1.62 -31.30 16 10 C 0.44 20.95 7.84 87.66 0.69 21.63 16 11 O -0.62 -34.58 15.91 -3.06 -0.05 -34.63 16 12 C 0.06 2.08 5.75 85.56 0.49 2.57 16 13 N -0.67 -20.01 3.99 -495.58 -1.98 -21.99 16 14 C 0.11 2.34 2.66 44.91 0.12 2.46 16 15 H 0.08 1.54 7.63 -2.39 -0.02 1.52 16 16 C 0.12 2.42 5.17 86.38 0.45 2.87 16 17 N -0.71 -16.18 4.90 -466.35 -2.29 -18.46 16 18 C 0.61 14.96 7.81 86.67 0.68 15.64 16 19 O -0.55 -15.26 16.80 -4.03 -0.07 -15.33 16 20 C -0.05 -1.12 6.87 41.36 0.28 -0.83 16 21 C -0.23 -3.28 11.21 67.76 0.76 -2.52 16 22 S 0.56 6.67 23.38 -56.49 -1.32 5.35 16 23 N -0.34 -7.78 12.49 37.02 0.46 -7.32 16 24 N -0.24 -6.19 11.24 -50.34 -0.57 -6.76 16 25 C -0.14 -2.78 5.69 -10.79 -0.06 -2.84 16 26 C -0.17 -4.40 9.86 30.62 0.30 -4.10 16 27 C -0.18 -4.10 10.07 30.62 0.31 -3.79 16 28 H 0.28 14.22 8.31 -92.70 -0.77 13.44 16 29 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 30 H 0.11 3.22 5.96 -2.39 -0.01 3.21 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.34 11.12 6.88 -89.70 -0.62 10.50 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.41 9.69 7.31 -92.72 -0.68 9.01 16 36 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.13 2.01 8.13 -2.39 -0.02 1.99 16 38 H 0.08 2.87 6.99 -2.39 -0.02 2.85 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.05 5.92 -2.39 -0.01 2.04 16 Total: -1.00 -75.02 366.98 -0.72 -75.74 By element: Atomic # 1 Polarization: 47.33 SS G_CDS: -0.90 Total: 46.43 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.30 Total: 12.52 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -5.71 Total: -135.78 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.12 Total: -49.96 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 6.67 SS G_CDS: -1.32 Total: 5.35 kcal Total: -75.02 -0.72 -75.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480036919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.536 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds