Wall clock time and date at job start Tue Mar 31 2020 22:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99805 * 2 1 4 4 H 1.48497 * 109.46738 * 240.00006 * 3 2 1 5 5 H 1.48498 * 109.47255 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47002 * 120.00507 * 3 2 1 7 7 C 1.38941 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00141 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99824 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99889 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99951 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00058 * 183.51168 * 13 12 10 15 15 H 1.09000 * 109.47072 * 176.52800 * 14 13 12 16 16 C 1.52997 * 109.47082 * 296.53352 * 14 13 12 17 17 N 1.46504 * 109.47085 * 304.99780 * 16 14 13 18 18 C 1.34769 * 120.00247 * 179.72655 * 17 16 14 19 19 O 1.21615 * 119.99796 * 0.02562 * 18 17 16 20 20 C 1.47447 * 120.00400 * 179.97438 * 18 17 16 21 21 C 1.37983 * 124.15582 * 180.02562 * 20 18 17 22 22 S 1.72103 * 104.03189 * 179.97438 * 21 20 18 23 23 N 1.56406 * 96.15378 * 359.97438 * 22 21 20 24 24 N 1.27423 * 109.87703 * 359.75562 * 23 22 21 25 25 C 1.53004 * 109.46609 * 56.53030 * 14 13 12 26 26 C 1.52999 * 117.49532 * 134.30954 * 25 14 13 27 27 C 1.53005 * 117.50028 * 65.65263 * 25 14 13 28 28 H 0.97000 * 119.99940 * 359.97438 * 1 2 3 29 29 H 0.96993 * 120.00310 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47165 * 60.00344 * 12 10 9 31 31 H 1.09005 * 109.47078 * 300.00417 * 12 10 9 32 32 H 1.00907 * 110.99846 * 307.46232 * 13 12 10 33 33 H 1.09000 * 109.46976 * 184.99777 * 16 14 13 34 34 H 1.09003 * 109.46836 * 64.99680 * 16 14 13 35 35 H 0.97006 * 119.99502 * 359.97438 * 17 16 14 36 36 H 1.08000 * 127.98469 * 359.95360 * 21 20 18 37 37 H 1.08994 * 115.55246 * 279.97531 * 25 14 13 38 38 H 1.08999 * 117.50164 * 359.97438 * 26 25 14 39 39 H 1.09004 * 117.50074 * 145.01826 * 26 25 14 40 40 H 1.08998 * 117.49478 * 214.97849 * 27 25 14 41 41 H 1.09002 * 117.49649 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 7 2.1983 -5.9794 -0.0017 14 6 1.4999 -7.2692 -0.0852 15 1 2.2313 -8.0751 -0.1461 16 6 0.6323 -7.4608 1.1603 17 7 1.4622 -7.3225 2.3596 18 6 0.9071 -7.4474 3.5813 19 8 -0.2827 -7.6754 3.6882 20 6 1.7425 -7.3088 4.7884 21 6 1.2649 -7.4206 6.0781 22 16 2.6558 -7.1736 7.0611 23 7 3.6604 -6.9645 5.8806 24 7 3.0485 -7.0673 4.7677 25 6 0.6137 -7.2893 -1.3322 26 6 0.6569 -8.5422 -2.2094 27 6 1.3094 -7.2452 -2.6943 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6161 -4.9205 -0.8903 31 1 0.6180 -4.9208 0.8897 32 1 2.8683 -5.8819 -0.7500 33 1 0.1838 -8.4541 1.1413 34 1 -0.1549 -6.7069 1.1742 35 1 2.4106 -7.1374 2.2744 36 1 0.2520 -7.6174 6.3971 37 1 -0.3419 -6.7735 -1.2383 38 1 1.3169 -9.3519 -1.8983 39 1 -0.2702 -8.8504 -2.6928 40 1 0.8113 -6.7006 -3.4963 41 1 2.3985 -7.2014 -2.7018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480036923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:21 Heat of formation + Delta-G solvation = 30.415724 kcal Electronic energy + Delta-G solvation = -26612.190090 eV Core-core repulsion = 22655.811757 eV Total energy + Delta-G solvation = -3956.378333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22834 -39.63691 -38.71666 -37.75302 -35.29513 -34.06952 -33.40432 -32.33039 -31.20634 -29.33505 -27.34807 -26.48788 -24.57969 -23.90046 -22.46937 -22.30727 -20.93406 -20.32417 -19.37753 -18.87179 -17.90448 -17.07015 -16.83732 -16.19167 -16.10495 -15.61847 -15.35814 -15.24505 -14.81838 -14.67632 -14.41513 -13.95287 -13.87914 -13.58309 -13.35162 -12.80023 -12.53128 -12.32838 -12.23078 -11.97285 -11.79235 -11.67129 -11.49911 -11.09993 -10.96498 -10.60937 -10.44648 -10.43349 -10.35339 -10.29262 -10.21256 -10.18769 -10.13100 -9.48672 -9.09664 -8.46522 -8.13076 -7.94778 -6.40280 -3.81127 -0.15367 0.69583 1.29622 1.32746 2.97227 3.07938 3.20888 3.26402 3.30960 3.60506 3.69947 3.93021 4.13580 4.35510 4.42765 4.50808 4.68560 4.76718 4.87293 4.97140 5.11438 5.16101 5.24512 5.27309 5.31678 5.51955 5.59794 5.77799 5.82927 5.88134 5.98698 6.00136 6.10783 6.25869 6.33349 7.13256 7.21049 7.54032 7.56209 7.59912 8.04769 8.07292 8.62403 9.19070 9.55696 10.07038 10.77372 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.003513 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.053622 B = 7967.782835 C =10794.464965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.047 3.953 13 N -0.656 5.656 14 C 0.104 3.896 15 H 0.091 0.909 16 C 0.130 3.870 17 N -0.690 5.690 18 C 0.602 3.398 19 O -0.534 6.534 20 C -0.019 4.019 21 C -0.238 4.238 22 S 0.452 5.548 23 N -0.285 5.285 24 N -0.202 5.202 25 C -0.188 4.188 26 C -0.173 4.173 27 C -0.172 4.172 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.355 0.645 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.421 0.579 36 H 0.208 0.792 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 -19.212 7.519 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.085 4.085 13 N -0.288 5.288 14 C -0.007 4.007 15 H 0.109 0.891 16 C 0.006 3.994 17 N -0.342 5.342 18 C 0.383 3.617 19 O -0.411 6.411 20 C -0.166 4.166 21 C -0.395 4.395 22 S 0.588 5.412 23 N -0.266 5.266 24 N -0.073 5.073 25 C -0.208 4.208 26 C -0.211 4.211 27 C -0.210 4.210 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.176 0.824 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.259 0.741 36 H 0.225 0.775 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.442 -18.875 8.918 20.881 hybrid contribution -1.560 0.889 -1.810 2.549 sum -1.118 -17.987 7.108 19.373 Atomic orbital electron populations 1.69608 1.05923 1.28228 1.50566 1.25249 0.95614 0.99679 0.97323 0.85932 0.78776 0.80523 0.79077 1.19905 1.20976 1.19907 1.19650 0.93328 0.82272 1.47676 0.87999 1.41846 1.09158 1.04612 1.64335 1.19820 0.88378 0.84763 0.84428 1.90525 1.13715 1.87074 1.55509 1.21711 0.94764 0.90741 1.01309 1.60342 1.16071 0.99351 1.53041 1.21474 0.94466 0.93698 0.91036 0.89126 1.21439 0.93302 1.02109 0.82560 1.45663 1.14412 1.69872 1.04203 1.16623 0.85820 0.77655 0.81639 1.90832 1.14131 1.49793 1.86341 1.22695 0.90678 1.07329 0.95931 1.28864 1.08979 1.05495 0.96156 1.81516 0.92029 1.48084 1.19567 1.78719 1.26535 1.22398 0.98928 1.71569 1.06379 1.12035 1.17322 1.23019 1.02212 1.03035 0.92547 1.22963 1.02842 0.91497 1.03799 1.22917 1.00316 1.00899 0.96828 0.91845 0.77524 0.93186 0.89829 0.82400 0.90651 0.90849 0.74085 0.77500 0.87348 0.88725 0.88892 0.88612 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 10 C 0.44 10.36 7.81 -10.98 -0.09 10.27 16 11 O -0.58 -15.70 15.70 5.54 0.09 -15.62 16 12 C 0.05 0.81 5.50 -4.98 -0.03 0.79 16 13 N -0.66 -9.70 5.55 -107.99 -0.60 -10.30 16 14 C 0.10 1.16 2.81 -67.71 -0.19 0.97 16 15 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 16 C 0.13 1.53 4.76 -4.04 -0.02 1.51 16 17 N -0.69 -9.07 5.38 -61.37 -0.33 -9.40 16 18 C 0.60 8.51 7.81 -12.51 -0.10 8.41 16 19 O -0.53 -8.54 16.80 5.26 0.09 -8.45 16 20 C -0.02 -0.24 6.87 -83.78 -0.58 -0.82 16 21 C -0.24 -2.24 11.21 30.64 0.34 -1.89 16 22 S 0.45 3.60 23.38 -107.50 -2.51 1.09 16 23 N -0.29 -3.57 12.49 60.35 0.75 -2.82 16 24 N -0.20 -2.82 11.24 32.74 0.37 -2.45 16 25 C -0.19 -1.92 3.80 -90.62 -0.34 -2.26 16 26 C -0.17 -1.49 10.18 -26.69 -0.27 -1.76 16 27 C -0.17 -1.73 10.04 -26.69 -0.27 -1.99 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 30 H 0.05 0.79 6.58 -51.93 -0.34 0.45 16 31 H 0.08 1.43 6.68 -51.93 -0.35 1.08 16 32 H 0.36 5.54 8.18 -39.29 -0.32 5.22 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.95 6.82 -51.93 -0.35 0.60 16 35 H 0.42 5.72 7.72 -40.82 -0.32 5.40 16 36 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.16 7.70 -51.93 -0.40 0.76 16 38 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -33.67 369.44 -7.57 -41.24 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -4.86 Total: 18.22 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.78 Total: 5.16 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.86 Total: -63.49 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.18 Total: -24.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.51 Total: 1.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.67 -7.57 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480036923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.658 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds