Wall clock time and date at job start Tue Mar 31 2020 22:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99805 * 2 1 4 4 H 1.48497 * 109.46738 * 240.00006 * 3 2 1 5 5 H 1.48498 * 109.47255 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47002 * 120.00507 * 3 2 1 7 7 C 1.38941 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00141 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99824 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99889 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99951 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00058 * 183.51168 * 13 12 10 15 15 H 1.09000 * 109.47072 * 176.52800 * 14 13 12 16 16 C 1.52997 * 109.47082 * 296.53352 * 14 13 12 17 17 N 1.46504 * 109.47085 * 304.99780 * 16 14 13 18 18 C 1.34769 * 120.00247 * 179.72655 * 17 16 14 19 19 O 1.21615 * 119.99796 * 0.02562 * 18 17 16 20 20 C 1.47447 * 120.00400 * 179.97438 * 18 17 16 21 21 C 1.37983 * 124.15582 * 180.02562 * 20 18 17 22 22 S 1.72103 * 104.03189 * 179.97438 * 21 20 18 23 23 N 1.56406 * 96.15378 * 359.97438 * 22 21 20 24 24 N 1.27423 * 109.87703 * 359.75562 * 23 22 21 25 25 C 1.53004 * 109.46609 * 56.53030 * 14 13 12 26 26 C 1.52999 * 117.49532 * 134.30954 * 25 14 13 27 27 C 1.53005 * 117.50028 * 65.65263 * 25 14 13 28 28 H 0.97000 * 119.99940 * 359.97438 * 1 2 3 29 29 H 0.96993 * 120.00310 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47165 * 60.00344 * 12 10 9 31 31 H 1.09005 * 109.47078 * 300.00417 * 12 10 9 32 32 H 1.00907 * 110.99846 * 307.46232 * 13 12 10 33 33 H 1.09000 * 109.46976 * 184.99777 * 16 14 13 34 34 H 1.09003 * 109.46836 * 64.99680 * 16 14 13 35 35 H 0.97006 * 119.99502 * 359.97438 * 17 16 14 36 36 H 1.08000 * 127.98469 * 359.95360 * 21 20 18 37 37 H 1.08994 * 115.55246 * 279.97531 * 25 14 13 38 38 H 1.08999 * 117.50164 * 359.97438 * 26 25 14 39 39 H 1.09004 * 117.50074 * 145.01826 * 26 25 14 40 40 H 1.08998 * 117.49478 * 214.97849 * 27 25 14 41 41 H 1.09002 * 117.49649 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 7 2.1983 -5.9794 -0.0017 14 6 1.4999 -7.2692 -0.0852 15 1 2.2313 -8.0751 -0.1461 16 6 0.6323 -7.4608 1.1603 17 7 1.4622 -7.3225 2.3596 18 6 0.9071 -7.4474 3.5813 19 8 -0.2827 -7.6754 3.6882 20 6 1.7425 -7.3088 4.7884 21 6 1.2649 -7.4206 6.0781 22 16 2.6558 -7.1736 7.0611 23 7 3.6604 -6.9645 5.8806 24 7 3.0485 -7.0673 4.7677 25 6 0.6137 -7.2893 -1.3322 26 6 0.6569 -8.5422 -2.2094 27 6 1.3094 -7.2452 -2.6943 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6161 -4.9205 -0.8903 31 1 0.6180 -4.9208 0.8897 32 1 2.8683 -5.8819 -0.7500 33 1 0.1838 -8.4541 1.1413 34 1 -0.1549 -6.7069 1.1742 35 1 2.4106 -7.1374 2.2744 36 1 0.2520 -7.6174 6.3971 37 1 -0.3419 -6.7735 -1.2383 38 1 1.3169 -9.3519 -1.8983 39 1 -0.2702 -8.8504 -2.6928 40 1 0.8113 -6.7006 -3.4963 41 1 2.3985 -7.2014 -2.7018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480036923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:20 Heat of formation + Delta-G solvation = 3.007400 kcal Electronic energy + Delta-G solvation = -26613.378604 eV Core-core repulsion = 22655.811757 eV Total energy + Delta-G solvation = -3957.566847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.12683 -40.74415 -40.08984 -39.16872 -36.32044 -35.95726 -34.69717 -33.27890 -33.19336 -30.47223 -28.42637 -27.80495 -26.18837 -25.08477 -23.27425 -23.12844 -21.89498 -21.56745 -20.74765 -20.08208 -19.75957 -18.37094 -17.89060 -17.18717 -17.12536 -16.95367 -16.42108 -16.34620 -16.26411 -15.95096 -15.89851 -15.33132 -15.23015 -14.94853 -14.53641 -14.07708 -13.65243 -13.56494 -13.45029 -13.21971 -13.07523 -12.95516 -12.82291 -12.44770 -12.39565 -12.15243 -12.05501 -11.56439 -11.51112 -11.26778 -11.19866 -11.16057 -11.06564 -10.89668 -10.35815 -10.12517 -10.02613 -9.37799 -8.47510 -5.96455 -0.92998 -0.03060 0.33709 0.54989 1.38282 1.39908 1.51000 1.98645 2.04392 2.09389 2.28104 2.73051 2.83875 3.06106 3.19786 3.46358 3.59430 3.67384 3.86123 3.95125 4.11294 4.14852 4.29208 4.31121 4.36665 4.41293 4.52685 4.55991 4.73837 4.82377 4.93385 5.05594 5.24276 5.27731 5.31374 5.39356 5.84955 6.06298 6.25714 6.37487 6.57745 6.58459 7.00117 7.11295 7.54823 8.09919 8.69758 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.003513 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.053622 B = 7967.782835 C =10794.464965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.620 6.620 12 C 0.068 3.932 13 N -0.664 5.664 14 C 0.115 3.885 15 H 0.109 0.891 16 C 0.130 3.870 17 N -0.690 5.690 18 C 0.599 3.401 19 O -0.560 6.560 20 C -0.047 4.047 21 C -0.236 4.236 22 S 0.559 5.441 23 N -0.335 5.335 24 N -0.235 5.235 25 C -0.197 4.197 26 C -0.151 4.151 27 C -0.183 4.183 28 H 0.277 0.723 29 H 0.394 0.606 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.351 0.649 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.419 0.581 36 H 0.232 0.768 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -20.100 8.308 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.506 6.506 12 C -0.064 4.064 13 N -0.296 5.296 14 C 0.005 3.995 15 H 0.127 0.873 16 C 0.006 3.994 17 N -0.340 5.340 18 C 0.381 3.619 19 O -0.438 6.438 20 C -0.195 4.195 21 C -0.393 4.393 22 S 0.694 5.306 23 N -0.316 5.316 24 N -0.104 5.104 25 C -0.218 4.218 26 C -0.189 4.189 27 C -0.220 4.220 28 H 0.087 0.913 29 H 0.228 0.772 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.256 0.744 36 H 0.248 0.752 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.152 -19.786 9.689 22.032 hybrid contribution -1.379 1.085 -1.918 2.600 sum -1.531 -18.701 7.771 20.309 Atomic orbital electron populations 1.69673 1.06852 1.29332 1.50319 1.26029 0.96516 1.02383 0.96246 0.85009 0.77792 0.76703 0.78967 1.19512 1.19419 1.19876 1.19635 0.92697 0.84061 1.50029 0.90303 1.41925 1.09215 1.04800 1.65141 1.20875 0.88283 0.86153 0.82122 1.90493 1.15646 1.87934 1.56565 1.21462 0.94405 0.88209 1.02319 1.60312 1.16032 1.00035 1.53219 1.21476 0.94758 0.92006 0.91277 0.87349 1.21516 0.92956 1.02567 0.82330 1.45739 1.14325 1.69374 1.04527 1.16844 0.85710 0.77122 0.82245 1.90802 1.15019 1.51232 1.86788 1.22644 0.90811 1.09464 0.96604 1.29286 1.10834 1.03634 0.95550 1.81076 0.89173 1.44452 1.15890 1.78336 1.28938 1.24224 1.00107 1.71599 1.06965 1.13310 1.18552 1.22915 1.01822 1.04954 0.92089 1.23043 1.03169 0.90880 1.01794 1.22948 1.00238 1.02349 0.96463 0.91314 0.77212 0.91281 0.89383 0.82850 0.89068 0.92095 0.74391 0.75182 0.87750 0.87401 0.87769 0.88887 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 13.05 21.66 0.28 -50.27 16 2 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 3 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -30.09 5.29 -306.98 -1.62 -31.71 16 10 C 0.44 21.09 7.81 87.66 0.68 21.77 16 11 O -0.62 -34.36 15.70 -3.08 -0.05 -34.41 16 12 C 0.07 2.36 5.50 85.56 0.47 2.83 16 13 N -0.66 -19.53 5.55 -495.56 -2.75 -22.28 16 14 C 0.11 2.42 2.81 44.91 0.13 2.55 16 15 H 0.11 1.96 7.95 -2.39 -0.02 1.94 16 16 C 0.13 2.97 4.76 86.38 0.41 3.38 16 17 N -0.69 -18.11 5.38 -466.34 -2.51 -20.62 16 18 C 0.60 16.95 7.81 86.67 0.68 17.62 16 19 O -0.56 -17.77 16.80 -4.08 -0.07 -17.84 16 20 C -0.05 -1.20 6.87 41.36 0.28 -0.91 16 21 C -0.24 -4.06 11.21 67.76 0.76 -3.30 16 22 S 0.56 7.73 23.38 -56.49 -1.32 6.41 16 23 N -0.34 -8.22 12.49 37.02 0.46 -7.76 16 24 N -0.24 -6.60 11.24 -50.34 -0.57 -7.16 16 25 C -0.20 -3.73 3.80 -10.79 -0.04 -3.77 16 26 C -0.15 -2.23 10.18 30.62 0.31 -1.92 16 27 C -0.18 -3.41 10.04 30.62 0.31 -3.10 16 28 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.39 19.86 7.90 -92.71 -0.73 19.13 16 30 H 0.07 2.14 6.58 -2.39 -0.02 2.13 16 31 H 0.09 3.01 6.68 -2.38 -0.02 2.99 16 32 H 0.35 10.96 8.18 -89.69 -0.73 10.23 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.56 6.82 -2.39 -0.02 1.54 16 35 H 0.42 11.52 7.72 -92.70 -0.72 10.81 16 36 H 0.23 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.10 2.09 7.70 -2.39 -0.02 2.07 16 38 H 0.11 1.34 8.08 -2.39 -0.02 1.32 16 39 H 0.10 1.34 8.14 -2.38 -0.02 1.33 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.51 369.44 -1.90 -76.41 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: -1.06 Total: 47.16 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.27 Total: 16.43 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -6.71 Total: -139.79 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.12 Total: -52.24 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.32 Total: 6.41 kcal Total: -74.51 -1.90 -76.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480036923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.418 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds