Wall clock time and date at job start Tue Mar 31 2020 22:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48504 * 109.47130 * 270.00168 * 3 2 1 5 5 H 1.48497 * 109.47367 * 30.00463 * 3 2 1 6 6 H 1.48506 * 109.46988 * 150.00357 * 3 2 1 7 7 C 1.38803 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99569 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00028 * 179.97438 * 7 2 1 10 10 C 1.80996 * 99.99977 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47122 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99855 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99923 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99784 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84993 * 23.80614 * 14 13 11 16 16 C 1.53783 * 113.61168 * 155.00161 * 14 13 11 17 17 C 1.53783 * 87.07828 * 89.11550 * 16 14 13 18 18 H 1.08998 * 113.61486 * 270.79388 * 17 16 14 19 19 N 1.46905 * 113.61291 * 139.98041 * 17 16 14 20 20 C 1.46901 * 110.99870 * 156.52848 * 19 17 16 21 21 C 1.50697 * 109.46943 * 180.02562 * 20 19 17 22 22 C 1.38229 * 119.59469 * 94.72626 * 21 20 19 23 23 C 1.38590 * 119.19197 * 179.77219 * 22 21 20 24 24 C 1.38880 * 118.39813 * 0.49349 * 23 22 21 25 25 F 1.35097 * 120.44321 * 179.77622 * 24 23 22 26 26 C 1.38424 * 119.11219 * 359.74594 * 24 23 22 27 27 N 1.31849 * 119.58817 * 274.99576 * 21 20 19 28 28 C 1.53774 * 87.17600 * 25.38903 * 17 16 14 29 29 H 0.96999 * 120.00228 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47008 * 59.99737 * 10 9 7 31 31 H 1.08997 * 109.47185 * 299.99924 * 10 9 7 32 32 H 0.96997 * 119.99607 * 0.02562 * 13 11 10 33 33 H 1.08999 * 113.61440 * 334.56820 * 16 14 13 34 34 H 1.08998 * 113.61081 * 203.65769 * 16 14 13 35 35 H 1.00901 * 110.99869 * 32.57560 * 19 17 16 36 36 H 1.09004 * 109.47031 * 299.99620 * 20 19 17 37 37 H 1.08995 * 109.47111 * 59.99900 * 20 19 17 38 38 H 1.07998 * 120.40074 * 359.97438 * 22 21 20 39 39 H 1.08005 * 120.80351 * 180.21689 * 23 22 21 40 40 H 1.08000 * 119.63520 * 179.97438 * 26 24 23 41 41 H 1.08999 * 113.61631 * 89.15784 * 28 17 16 42 42 H 1.09000 * 113.61927 * 220.06223 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3441 -2.2961 -0.0025 13 7 6.0458 -4.4946 -0.0016 14 6 7.4908 -4.7356 -0.0021 15 1 8.0597 -3.8985 0.4025 16 6 7.8886 -6.0962 0.5939 17 6 7.7381 -6.6727 -0.8238 18 1 6.7309 -7.0244 -1.0475 19 7 8.7752 -7.6525 -1.1738 20 6 8.3109 -8.5534 -2.2372 21 6 9.3987 -9.5424 -2.5682 22 6 9.4005 -10.7840 -1.9605 23 6 10.4022 -11.6888 -2.2745 24 6 11.3769 -11.3049 -3.1863 25 9 12.3749 -12.1526 -3.5190 26 6 11.3118 -10.0424 -3.7501 27 7 10.3399 -9.2108 -3.4298 28 6 8.0267 -5.2563 -1.3482 29 1 -0.4850 0.8400 0.0004 30 1 3.6433 -3.4317 -0.8907 31 1 3.6441 -3.4313 0.8893 32 1 5.4291 -5.2433 -0.0009 33 1 7.1626 -6.4905 1.3050 34 1 8.9109 -6.1257 0.9709 35 1 9.0693 -8.1735 -0.3613 36 1 7.4242 -9.0891 -1.8981 37 1 8.0661 -7.9712 -3.1255 38 1 8.6289 -11.0468 -1.2520 39 1 10.4267 -12.6672 -1.8179 40 1 12.0657 -9.7350 -4.4598 41 1 9.0868 -5.0556 -1.5031 42 1 7.4121 -4.9733 -2.2028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480127216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:43 Heat of formation + Delta-G solvation = -21.710716 kcal Electronic energy + Delta-G solvation = -24762.563351 eV Core-core repulsion = 20784.004684 eV Total energy + Delta-G solvation = -3978.558667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.51427 -40.76923 -40.16041 -38.32613 -35.39336 -33.08166 -32.99427 -32.44358 -31.12792 -29.14645 -26.48456 -25.90285 -25.61777 -24.48964 -23.46581 -22.38752 -20.94029 -19.47560 -18.23387 -17.89216 -17.85721 -17.04279 -16.68829 -16.35115 -16.12766 -15.73412 -15.49226 -15.02682 -14.98885 -14.81756 -14.50599 -14.41544 -13.97849 -13.69209 -13.58883 -13.33664 -12.94519 -12.83091 -12.78211 -12.58737 -12.47171 -11.98953 -11.73377 -11.26883 -11.01158 -10.80708 -10.71338 -10.57384 -10.53216 -10.09920 -9.86254 -9.54255 -9.46690 -9.04241 -8.99476 -8.82112 -8.50833 -6.92505 -6.29612 -4.01428 0.28402 0.50978 2.74277 2.93489 2.96012 3.28531 3.33827 3.40806 3.50541 3.63322 3.66471 3.85769 4.05899 4.16138 4.21049 4.26341 4.32803 4.36676 4.69364 4.72877 4.74399 4.77916 4.89404 5.01865 5.09601 5.23609 5.24921 5.27855 5.31955 5.38141 5.48627 5.63242 5.74165 5.79986 5.91479 5.96287 6.00002 6.01232 6.48710 6.69700 6.87396 7.32018 7.58982 7.93336 8.40616 8.47932 9.16643 10.79570 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.001512 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.976889 B =18512.473928 C =18651.297727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.720 5.720 14 C 0.124 3.876 15 H 0.106 0.894 16 C -0.147 4.147 17 C 0.059 3.941 18 H 0.075 0.925 19 N -0.667 5.667 20 C 0.108 3.892 21 C 0.123 3.877 22 C -0.138 4.138 23 C -0.108 4.108 24 C 0.044 3.956 25 F -0.130 7.130 26 C 0.079 3.921 27 N -0.435 5.435 28 C -0.135 4.135 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.341 0.659 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.098 0.902 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.825 -26.736 -2.851 34.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.374 5.374 14 C 0.017 3.983 15 H 0.124 0.876 16 C -0.186 4.186 17 C -0.051 4.051 18 H 0.093 0.907 19 N -0.298 5.298 20 C -0.022 4.022 21 C -0.015 4.015 22 C -0.159 4.159 23 C -0.135 4.135 24 C 0.022 3.978 25 F -0.109 7.109 26 C -0.080 4.080 27 N -0.143 5.143 28 C -0.175 4.175 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.232 0.768 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.186 0.814 41 H 0.116 0.884 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.253 -23.826 -3.675 32.808 hybrid contribution -1.486 -2.472 0.726 2.974 sum 20.766 -26.297 -2.949 33.638 Atomic orbital electron populations 1.69936 1.05924 1.27778 1.48051 1.24710 0.94444 0.98965 0.93142 0.86737 0.81900 0.83265 0.79963 1.19188 1.19933 1.15909 1.22319 0.88300 0.97533 1.58841 0.89408 1.84807 1.09237 0.99977 1.97423 1.23283 0.93961 1.04474 1.05792 1.20293 0.90550 0.82288 0.74940 1.90703 1.58734 1.42139 1.47460 1.45682 1.06450 1.08004 1.77243 1.21664 0.82127 0.97557 0.96960 0.87611 1.23588 1.03033 0.96067 0.95930 1.23165 0.93420 0.92413 0.96080 0.90724 1.60567 1.38845 1.18264 1.12168 1.20860 0.91750 0.92357 0.97208 1.21262 0.94678 0.92994 0.92566 1.21957 0.99277 0.93890 1.00744 1.21666 0.93622 1.01399 0.96779 1.18885 0.88657 0.90483 0.99725 1.91536 1.58477 1.69729 1.91170 1.23001 0.97467 0.88493 0.99042 1.67593 1.01044 1.33133 1.12569 1.23561 1.02560 0.93805 0.97585 0.91938 0.88503 0.88457 0.76792 0.90776 0.88146 0.84059 0.93099 0.88658 0.83814 0.83437 0.81431 0.88386 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.72 27.74 -169.99 -4.71 17.01 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 11 C 0.53 9.19 7.85 -10.98 -0.09 9.10 16 12 O -0.52 -10.98 15.46 5.56 0.09 -10.89 16 13 N -0.72 -8.60 5.26 -52.93 -0.28 -8.88 16 14 C 0.12 1.30 4.33 -67.02 -0.29 1.01 16 15 H 0.11 1.34 7.46 -51.93 -0.39 0.96 16 16 C -0.15 -1.04 7.42 -25.92 -0.19 -1.24 16 17 C 0.06 0.41 3.99 -66.90 -0.27 0.15 16 18 H 0.07 0.49 7.88 -51.93 -0.41 0.08 16 19 N -0.67 -4.46 6.54 -107.13 -0.70 -5.17 16 20 C 0.11 0.68 5.85 -4.98 -0.03 0.65 16 21 C 0.12 0.86 6.29 -82.59 -0.52 0.34 16 22 C -0.14 -0.68 9.72 -39.45 -0.38 -1.06 16 23 C -0.11 -0.55 10.16 -39.21 -0.40 -0.95 16 24 C 0.04 0.29 7.35 -39.28 -0.29 0.00 16 25 F -0.13 -0.94 17.28 2.25 0.04 -0.90 16 26 C 0.08 0.57 11.17 -17.47 -0.20 0.37 16 27 N -0.44 -3.79 10.27 -9.42 -0.10 -3.88 16 28 C -0.14 -1.31 7.69 -25.83 -0.20 -1.51 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 31 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.40 3.59 8.70 -40.82 -0.36 3.24 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.34 1.86 8.55 -39.29 -0.34 1.52 16 36 H 0.05 0.23 8.03 -51.93 -0.42 -0.19 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 40 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -34.86 377.67 -9.32 -44.18 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.71 Total: 1.26 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.41 Total: -7.21 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.30 Total: -43.60 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.04 Total: -0.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.86 -9.32 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480127216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.467 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds