Wall clock time and date at job start Tue Mar 31 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48504 * 109.47130 * 270.00168 * 3 2 1 5 5 H 1.48497 * 109.47367 * 30.00463 * 3 2 1 6 6 H 1.48506 * 109.46988 * 150.00357 * 3 2 1 7 7 C 1.38803 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99569 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00028 * 179.97438 * 7 2 1 10 10 C 1.80996 * 99.99977 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47122 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99855 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99923 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99784 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84993 * 23.80614 * 14 13 11 16 16 C 1.53783 * 113.61168 * 155.00161 * 14 13 11 17 17 C 1.53783 * 87.07828 * 89.11550 * 16 14 13 18 18 H 1.08998 * 113.61486 * 270.79388 * 17 16 14 19 19 N 1.46905 * 113.61291 * 139.98041 * 17 16 14 20 20 C 1.46901 * 110.99870 * 156.52848 * 19 17 16 21 21 C 1.50697 * 109.46943 * 180.02562 * 20 19 17 22 22 C 1.38229 * 119.59469 * 94.72626 * 21 20 19 23 23 C 1.38590 * 119.19197 * 179.77219 * 22 21 20 24 24 C 1.38880 * 118.39813 * 0.49349 * 23 22 21 25 25 F 1.35097 * 120.44321 * 179.77622 * 24 23 22 26 26 C 1.38424 * 119.11219 * 359.74594 * 24 23 22 27 27 N 1.31849 * 119.58817 * 274.99576 * 21 20 19 28 28 C 1.53774 * 87.17600 * 25.38903 * 17 16 14 29 29 H 0.96999 * 120.00228 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47008 * 59.99737 * 10 9 7 31 31 H 1.08997 * 109.47185 * 299.99924 * 10 9 7 32 32 H 0.96997 * 119.99607 * 0.02562 * 13 11 10 33 33 H 1.08999 * 113.61440 * 334.56820 * 16 14 13 34 34 H 1.08998 * 113.61081 * 203.65769 * 16 14 13 35 35 H 1.00901 * 110.99869 * 32.57560 * 19 17 16 36 36 H 1.09004 * 109.47031 * 299.99620 * 20 19 17 37 37 H 1.08995 * 109.47111 * 59.99900 * 20 19 17 38 38 H 1.07998 * 120.40074 * 359.97438 * 22 21 20 39 39 H 1.08005 * 120.80351 * 180.21689 * 23 22 21 40 40 H 1.08000 * 119.63520 * 179.97438 * 26 24 23 41 41 H 1.08999 * 113.61631 * 89.15784 * 28 17 16 42 42 H 1.09000 * 113.61927 * 220.06223 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3441 -2.2961 -0.0025 13 7 6.0458 -4.4946 -0.0016 14 6 7.4908 -4.7356 -0.0021 15 1 8.0597 -3.8985 0.4025 16 6 7.8886 -6.0962 0.5939 17 6 7.7381 -6.6727 -0.8238 18 1 6.7309 -7.0244 -1.0475 19 7 8.7752 -7.6525 -1.1738 20 6 8.3109 -8.5534 -2.2372 21 6 9.3987 -9.5424 -2.5682 22 6 9.4005 -10.7840 -1.9605 23 6 10.4022 -11.6888 -2.2745 24 6 11.3769 -11.3049 -3.1863 25 9 12.3749 -12.1526 -3.5190 26 6 11.3118 -10.0424 -3.7501 27 7 10.3399 -9.2108 -3.4298 28 6 8.0267 -5.2563 -1.3482 29 1 -0.4850 0.8400 0.0004 30 1 3.6433 -3.4317 -0.8907 31 1 3.6441 -3.4313 0.8893 32 1 5.4291 -5.2433 -0.0009 33 1 7.1626 -6.4905 1.3050 34 1 8.9109 -6.1257 0.9709 35 1 9.0693 -8.1735 -0.3613 36 1 7.4242 -9.0891 -1.8981 37 1 8.0661 -7.9712 -3.1255 38 1 8.6289 -11.0468 -1.2520 39 1 10.4267 -12.6672 -1.8179 40 1 12.0657 -9.7350 -4.4598 41 1 9.0868 -5.0556 -1.5031 42 1 7.4121 -4.9733 -2.2028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480127216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:42 Heat of formation + Delta-G solvation = -47.359901 kcal Electronic energy + Delta-G solvation = -24763.675583 eV Core-core repulsion = 20784.004684 eV Total energy + Delta-G solvation = -3979.670899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.01680 -41.33569 -41.04761 -39.41616 -36.07531 -34.66816 -34.04357 -33.50561 -31.76868 -30.48772 -27.85714 -27.04885 -26.56449 -24.91924 -24.20282 -22.86076 -22.16442 -20.33619 -19.86756 -18.69359 -18.33214 -18.04941 -17.46592 -17.20429 -17.01246 -16.87522 -16.60961 -16.34497 -15.99700 -15.73670 -15.45903 -15.00393 -14.90956 -14.84930 -14.65370 -14.29927 -14.08162 -13.89081 -13.44352 -13.35588 -13.30825 -13.13226 -13.07683 -12.97273 -12.66377 -12.35205 -11.85950 -11.50644 -11.40837 -11.16562 -10.99610 -10.95386 -10.56796 -10.52330 -10.06675 -9.93707 -9.35332 -8.98793 -8.51049 -6.21635 -0.16741 0.09965 0.99758 1.31983 1.47506 1.56268 1.56670 2.21649 2.26680 2.49969 2.72772 2.87411 2.96691 3.20864 3.40653 3.54072 3.60059 3.71938 3.78702 3.85586 3.88348 4.00555 4.16288 4.25942 4.32064 4.46916 4.47975 4.59780 4.68220 4.85214 4.86608 4.88515 4.89790 4.95040 5.03411 5.11250 5.18033 5.56912 5.59999 5.71273 6.07844 6.11971 6.46419 6.49552 6.86429 6.94461 7.22629 8.61204 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.001512 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.976889 B =18512.473928 C =18651.297727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.693 5.693 14 C 0.110 3.890 15 H 0.081 0.919 16 C -0.126 4.126 17 C 0.074 3.926 18 H 0.089 0.911 19 N -0.676 5.676 20 C 0.111 3.889 21 C 0.110 3.890 22 C -0.128 4.128 23 C -0.105 4.105 24 C 0.032 3.968 25 F -0.137 7.137 26 C 0.065 3.935 27 N -0.470 5.470 28 C -0.139 4.139 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.417 0.583 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.352 0.648 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.090 0.910 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.420 -28.981 -1.882 36.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.262 4.262 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.346 5.346 14 C 0.004 3.996 15 H 0.099 0.901 16 C -0.164 4.164 17 C -0.036 4.036 18 H 0.107 0.893 19 N -0.309 5.309 20 C -0.019 4.019 21 C -0.028 4.028 22 C -0.148 4.148 23 C -0.131 4.131 24 C 0.011 3.989 25 F -0.116 7.116 26 C -0.093 4.093 27 N -0.179 5.179 28 C -0.178 4.178 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.254 0.746 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.172 0.828 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.194 0.806 39 H 0.190 0.810 40 H 0.192 0.808 41 H 0.109 0.891 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 22.851 -26.142 -2.703 34.826 hybrid contribution -1.615 -1.949 0.393 2.561 sum 21.236 -28.090 -2.310 35.290 Atomic orbital electron populations 1.70011 1.07265 1.28993 1.49166 1.25538 0.95243 1.02174 0.92897 0.85886 0.80702 0.79728 0.80168 1.18809 1.18319 1.16113 1.22466 0.90239 0.96717 1.58226 0.91835 1.84760 1.06441 1.06386 1.97591 1.23271 0.95795 0.99516 1.07574 1.19979 0.89357 0.83444 0.74945 1.90694 1.59350 1.43910 1.50174 1.45399 1.07681 1.06685 1.74883 1.21828 0.80579 0.98781 0.98447 0.90080 1.23481 1.03962 0.92762 0.96225 1.23006 0.94143 0.91087 0.95317 0.89331 1.60416 1.38899 1.18770 1.12792 1.20845 0.92486 0.92158 0.96368 1.21498 0.94540 0.94084 0.92700 1.22242 0.99557 0.92661 1.00362 1.22002 0.92798 1.02464 0.95872 1.19030 0.89114 0.90335 1.00447 1.91517 1.58895 1.69829 1.91355 1.23143 0.97662 0.88920 0.99624 1.67557 1.02093 1.34272 1.13932 1.23540 1.01730 0.96177 0.96401 0.91387 0.86804 0.86569 0.74580 0.88905 0.87207 0.82796 0.90489 0.90584 0.80632 0.80987 0.80761 0.89139 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.97 21.65 0.30 -55.21 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 44.96 27.74 68.60 1.90 46.86 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 7 C -0.53 -30.57 10.04 67.96 0.68 -29.88 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 10 C -0.11 -4.03 6.16 71.24 0.44 -3.59 16 11 C 0.54 17.89 7.85 87.66 0.69 18.58 16 12 O -0.56 -23.96 15.46 -3.04 -0.05 -24.01 16 13 N -0.69 -15.09 5.26 -439.75 -2.31 -17.40 16 14 C 0.11 2.15 4.33 45.58 0.20 2.34 16 15 H 0.08 2.05 7.46 -2.39 -0.02 2.03 16 16 C -0.13 -1.37 7.42 31.12 0.23 -1.14 16 17 C 0.07 0.83 3.99 45.44 0.18 1.02 16 18 H 0.09 0.80 7.88 -2.39 -0.02 0.78 16 19 N -0.68 -7.28 6.54 -492.86 -3.22 -10.50 16 20 C 0.11 1.13 5.85 85.56 0.50 1.63 16 21 C 0.11 1.33 6.29 42.55 0.27 1.60 16 22 C -0.13 -0.87 9.72 22.35 0.22 -0.65 16 23 C -0.11 -0.82 10.16 22.51 0.23 -0.59 16 24 C 0.03 0.40 7.35 22.47 0.17 0.56 16 25 F -0.14 -1.89 17.28 44.97 0.78 -1.11 16 26 C 0.07 0.92 11.17 84.73 0.95 1.87 16 27 N -0.47 -7.97 10.27 -183.71 -1.89 -9.85 16 28 C -0.14 -2.53 7.69 31.18 0.24 -2.29 16 29 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.12 3.82 8.14 -2.40 -0.02 3.80 16 32 H 0.42 6.09 8.70 -92.71 -0.81 5.29 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.35 2.61 8.55 -89.69 -0.77 1.85 16 36 H 0.08 0.39 8.03 -2.39 -0.02 0.37 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 39 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 40 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -77.70 377.67 -0.63 -78.33 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.55 Total: 10.23 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.45 Total: -7.34 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -7.12 Total: -92.96 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.78 Total: -1.11 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -77.70 -0.63 -78.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480127216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.968 kcal (2) G-P(sol) polarization free energy of solvation -77.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds