Wall clock time and date at job start Tue Mar 31 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48499 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47172 * 299.99676 * 3 2 1 6 6 H 1.48494 * 109.47335 * 59.99959 * 3 2 1 7 7 C 1.38958 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99960 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99425 * 0.27120 * 7 2 1 10 10 C 1.34785 * 119.99613 * 179.72328 * 9 7 2 11 11 O 1.21293 * 119.99655 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00033 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47222 * 180.02562 * 12 10 9 14 14 C 1.47441 * 111.00289 * 75.63857 * 13 12 10 15 15 C 1.54319 * 107.23266 * 123.26136 * 14 13 12 16 16 C 1.55136 * 103.01878 * 22.28164 * 15 14 13 17 17 C 1.47846 * 111.00040 * 196.48785 * 13 12 10 18 18 H 1.09007 * 110.36978 * 332.45821 * 17 13 12 19 19 C 1.52995 * 110.37509 * 94.80207 * 17 13 12 20 20 N 1.46498 * 109.47350 * 297.98688 * 19 17 13 21 21 C 1.34774 * 120.00131 * 173.27870 * 20 19 17 22 22 O 1.21605 * 120.00241 * 0.02562 * 21 20 19 23 23 C 1.47453 * 120.00109 * 180.02562 * 21 20 19 24 24 C 1.37984 * 124.15507 * 180.02562 * 23 21 20 25 25 S 1.72100 * 104.03193 * 179.97438 * 24 23 21 26 26 N 1.56406 * 96.15576 * 359.97438 * 25 24 23 27 27 N 1.27417 * 109.87274 * 359.72676 * 26 25 24 28 28 H 0.97000 * 120.00521 * 0.02562 * 1 2 3 29 29 H 0.96991 * 120.00604 * 359.73243 * 9 7 2 30 30 H 1.09006 * 109.47079 * 300.00050 * 12 10 9 31 31 H 1.09000 * 109.47101 * 60.00113 * 12 10 9 32 32 H 1.08994 * 109.89116 * 242.66465 * 14 13 12 33 33 H 1.09003 * 109.88662 * 3.69251 * 14 13 12 34 34 H 1.08999 * 110.70945 * 140.66956 * 15 14 13 35 35 H 1.09008 * 110.70339 * 263.72909 * 15 14 13 36 36 H 1.09005 * 110.98983 * 82.44443 * 16 15 14 37 37 H 1.09004 * 110.99500 * 206.25409 * 16 15 14 38 38 H 1.08995 * 109.47352 * 57.99111 * 19 17 13 39 39 H 1.09002 * 109.47086 * 177.98829 * 19 17 13 40 40 H 0.96997 * 119.99906 * 353.29021 * 20 19 17 41 41 H 1.07994 * 127.98173 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 -0.0046 10 6 1.9973 -3.5579 -0.0097 11 8 3.2103 -3.5578 -0.0093 12 6 1.2439 -4.8629 -0.0158 13 7 2.1985 -5.9795 -0.0200 14 6 2.8005 -6.1650 1.3130 15 6 2.5155 -7.6188 1.7450 16 6 2.2629 -8.3412 0.3956 17 6 1.5372 -7.2405 -0.4177 18 1 0.4789 -7.2123 -0.1579 19 6 1.7123 -7.4838 -1.9180 20 7 1.0725 -6.3992 -2.6666 21 6 1.2149 -6.3287 -4.0049 22 8 1.8741 -7.1656 -4.5912 23 6 0.5713 -5.2367 -4.7583 24 6 0.6599 -5.0825 -6.1267 25 16 -0.2673 -3.6686 -6.4481 26 7 -0.6704 -3.3911 -4.9626 27 7 -0.1707 -4.2846 -4.2040 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0046 30 1 0.6170 -4.9248 0.8737 31 1 0.6176 -4.9167 -0.9063 32 1 3.8763 -5.9980 1.2606 33 1 2.3516 -5.4700 2.0226 34 1 3.3790 -8.0458 2.2550 35 1 1.6318 -7.6655 2.3815 36 1 3.2032 -8.6217 -0.0792 37 1 1.6218 -9.2121 0.5328 38 1 2.7748 -7.5145 -2.1595 39 1 1.2507 -8.4335 -2.1884 40 1 0.5465 -5.7317 -2.1990 41 1 1.1882 -5.7057 -6.8329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481050299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:07 Heat of formation + Delta-G solvation = 17.981924 kcal Electronic energy + Delta-G solvation = -27456.142120 eV Core-core repulsion = 23499.224617 eV Total energy + Delta-G solvation = -3956.917503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11942 -39.77712 -38.82087 -37.54872 -34.71186 -33.85719 -32.27176 -31.97538 -31.07418 -30.09634 -27.24801 -26.75203 -25.44850 -24.18674 -22.97668 -21.39670 -20.73284 -20.35911 -19.25017 -18.95977 -17.80810 -17.04163 -16.38904 -16.02074 -15.99752 -15.80982 -15.36070 -15.09355 -14.80041 -14.46583 -14.08930 -13.88923 -13.79356 -13.61974 -12.92825 -12.66487 -12.51536 -12.17872 -12.15491 -12.12067 -11.67644 -11.38825 -11.33822 -11.19465 -11.03793 -10.96347 -10.56084 -10.43511 -10.31053 -10.19566 -10.16816 -10.16580 -9.99825 -9.44921 -9.06375 -8.44275 -7.91757 -7.87851 -6.35272 -3.75571 -0.01793 0.82845 1.41503 1.47178 3.02482 3.16896 3.19519 3.29384 3.36634 3.76270 3.89833 3.97329 4.25506 4.55238 4.59824 4.66828 4.78073 4.93561 5.09087 5.17180 5.21195 5.25185 5.30698 5.50872 5.51101 5.67905 5.75980 5.77310 5.83931 5.91607 6.01609 6.16509 6.32641 6.38707 6.43952 7.20727 7.23368 7.27831 7.56689 7.60868 8.06380 8.12444 8.68686 9.24784 9.61467 10.13614 10.82456 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.006717 B = 0.005225 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4167.752754 B = 5357.548386 C = 8991.136583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.445 3.555 11 O -0.574 6.574 12 C 0.040 3.960 13 N -0.499 5.499 14 C 0.055 3.945 15 C -0.143 4.143 16 C -0.116 4.116 17 C 0.053 3.947 18 H 0.061 0.939 19 C 0.136 3.864 20 N -0.701 5.701 21 C 0.607 3.393 22 O -0.532 6.532 23 C -0.022 4.022 24 C -0.240 4.240 25 S 0.451 5.549 26 N -0.274 5.274 27 N -0.204 5.204 28 H 0.270 0.730 29 H 0.392 0.608 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.409 0.591 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 -14.904 -7.966 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.457 6.457 12 C -0.092 4.092 13 N -0.223 5.223 14 C -0.072 4.072 15 C -0.181 4.181 16 C -0.155 4.155 17 C -0.056 4.056 18 H 0.079 0.921 19 C 0.012 3.988 20 N -0.354 5.354 21 C 0.388 3.612 22 O -0.409 6.409 23 C -0.170 4.170 24 C -0.397 4.397 25 S 0.587 5.413 26 N -0.255 5.255 27 N -0.074 5.074 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.249 0.751 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.196 -13.636 -8.585 16.428 hybrid contribution -0.272 -0.064 0.970 1.010 sum -3.468 -13.700 -7.615 16.053 Atomic orbital electron populations 1.69620 1.05853 1.27900 1.50680 1.25230 0.95596 0.99564 0.97507 0.85852 0.79718 0.81414 0.77666 1.19301 1.20811 1.20790 1.19703 0.93263 0.82217 1.47394 0.88038 1.41847 1.09143 1.04529 1.64591 1.19643 0.88413 0.84356 0.84634 1.90522 1.13557 1.86904 1.54745 1.22206 0.93869 0.92281 1.00805 1.63123 1.30279 1.01654 1.27278 1.22743 1.01594 0.94431 0.88437 1.22840 1.01876 0.96401 0.97018 1.22620 1.00990 0.96610 0.95257 1.22874 0.97584 0.90948 0.94173 0.92077 1.21484 0.99343 0.88698 0.89247 1.46022 1.52516 1.30622 1.06274 1.16597 0.79887 0.82600 0.82124 1.90809 1.40616 1.40115 1.69334 1.22690 1.03025 0.99193 0.92068 1.28825 1.06395 1.05215 0.99297 1.81511 1.30815 1.12551 1.16414 1.78781 1.23447 1.21345 1.01884 1.71547 1.07951 0.99306 1.28618 0.92011 0.77541 0.92903 0.90314 0.89891 0.92638 0.90655 0.91632 0.90066 0.90639 0.89818 0.91046 0.75129 0.77584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.61 5.29 -10.96 -0.06 -14.66 16 10 C 0.44 10.68 7.60 -10.98 -0.08 10.60 16 11 O -0.57 -15.82 15.43 5.55 0.09 -15.74 16 12 C 0.04 0.72 4.92 -4.98 -0.02 0.70 16 13 N -0.50 -8.07 4.34 -224.82 -0.98 -9.04 16 14 C 0.06 0.84 5.99 -2.84 -0.02 0.82 16 15 C -0.14 -1.53 6.94 -24.91 -0.17 -1.70 16 16 C -0.12 -1.14 6.49 -24.60 -0.16 -1.30 16 17 C 0.05 0.65 2.66 -66.19 -0.18 0.47 16 18 H 0.06 0.68 7.81 -51.92 -0.41 0.28 16 19 C 0.14 1.73 5.39 -4.05 -0.02 1.71 16 20 N -0.70 -10.23 5.37 -61.38 -0.33 -10.56 16 21 C 0.61 9.45 7.81 -12.51 -0.10 9.35 16 22 O -0.53 -9.04 16.78 5.27 0.09 -8.95 16 23 C -0.02 -0.33 6.87 -83.78 -0.58 -0.90 16 24 C -0.24 -2.63 11.21 30.64 0.34 -2.29 16 25 S 0.45 4.50 23.38 -107.50 -2.51 1.98 16 26 N -0.27 -4.16 12.49 60.35 0.75 -3.40 16 27 N -0.20 -3.30 11.24 32.74 0.37 -2.94 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 30 H 0.05 0.86 7.78 -51.93 -0.40 0.45 16 31 H 0.08 1.32 4.98 -51.93 -0.26 1.06 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.06 0.90 7.36 -51.93 -0.38 0.52 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 36 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.41 6.11 4.98 -40.82 -0.20 5.91 16 41 H 0.21 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -35.10 360.50 -7.54 -42.63 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.86 Total: 13.58 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -1.23 Total: 9.41 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: 0.48 Total: -64.87 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.17 Total: -24.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -2.51 Total: 1.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.10 -7.54 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481050299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.614 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds