Wall clock time and date at job start Tue Mar 31 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48499 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47172 * 299.99676 * 3 2 1 6 6 H 1.48494 * 109.47335 * 59.99959 * 3 2 1 7 7 C 1.38958 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99960 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99425 * 0.27120 * 7 2 1 10 10 C 1.34785 * 119.99613 * 179.72328 * 9 7 2 11 11 O 1.21293 * 119.99655 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00033 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47222 * 180.02562 * 12 10 9 14 14 C 1.47441 * 111.00289 * 75.63857 * 13 12 10 15 15 C 1.54319 * 107.23266 * 123.26136 * 14 13 12 16 16 C 1.55136 * 103.01878 * 22.28164 * 15 14 13 17 17 C 1.47846 * 111.00040 * 196.48785 * 13 12 10 18 18 H 1.09007 * 110.36978 * 332.45821 * 17 13 12 19 19 C 1.52995 * 110.37509 * 94.80207 * 17 13 12 20 20 N 1.46498 * 109.47350 * 297.98688 * 19 17 13 21 21 C 1.34774 * 120.00131 * 173.27870 * 20 19 17 22 22 O 1.21605 * 120.00241 * 0.02562 * 21 20 19 23 23 C 1.47453 * 120.00109 * 180.02562 * 21 20 19 24 24 C 1.37984 * 124.15507 * 180.02562 * 23 21 20 25 25 S 1.72100 * 104.03193 * 179.97438 * 24 23 21 26 26 N 1.56406 * 96.15576 * 359.97438 * 25 24 23 27 27 N 1.27417 * 109.87274 * 359.72676 * 26 25 24 28 28 H 0.97000 * 120.00521 * 0.02562 * 1 2 3 29 29 H 0.96991 * 120.00604 * 359.73243 * 9 7 2 30 30 H 1.09006 * 109.47079 * 300.00050 * 12 10 9 31 31 H 1.09000 * 109.47101 * 60.00113 * 12 10 9 32 32 H 1.08994 * 109.89116 * 242.66465 * 14 13 12 33 33 H 1.09003 * 109.88662 * 3.69251 * 14 13 12 34 34 H 1.08999 * 110.70945 * 140.66956 * 15 14 13 35 35 H 1.09008 * 110.70339 * 263.72909 * 15 14 13 36 36 H 1.09005 * 110.98983 * 82.44443 * 16 15 14 37 37 H 1.09004 * 110.99500 * 206.25409 * 16 15 14 38 38 H 1.08995 * 109.47352 * 57.99111 * 19 17 13 39 39 H 1.09002 * 109.47086 * 177.98829 * 19 17 13 40 40 H 0.96997 * 119.99906 * 353.29021 * 20 19 17 41 41 H 1.07994 * 127.98173 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 -0.0046 10 6 1.9973 -3.5579 -0.0097 11 8 3.2103 -3.5578 -0.0093 12 6 1.2439 -4.8629 -0.0158 13 7 2.1985 -5.9795 -0.0200 14 6 2.8005 -6.1650 1.3130 15 6 2.5155 -7.6188 1.7450 16 6 2.2629 -8.3412 0.3956 17 6 1.5372 -7.2405 -0.4177 18 1 0.4789 -7.2123 -0.1579 19 6 1.7123 -7.4838 -1.9180 20 7 1.0725 -6.3992 -2.6666 21 6 1.2149 -6.3287 -4.0049 22 8 1.8741 -7.1656 -4.5912 23 6 0.5713 -5.2367 -4.7583 24 6 0.6599 -5.0825 -6.1267 25 16 -0.2673 -3.6686 -6.4481 26 7 -0.6704 -3.3911 -4.9626 27 7 -0.1707 -4.2846 -4.2040 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0046 30 1 0.6170 -4.9248 0.8737 31 1 0.6176 -4.9167 -0.9063 32 1 3.8763 -5.9980 1.2606 33 1 2.3516 -5.4700 2.0226 34 1 3.3790 -8.0458 2.2550 35 1 1.6318 -7.6655 2.3815 36 1 3.2032 -8.6217 -0.0792 37 1 1.6218 -9.2121 0.5328 38 1 2.7748 -7.5145 -2.1595 39 1 1.2507 -8.4335 -2.1884 40 1 0.5465 -5.7317 -2.1990 41 1 1.1882 -5.7057 -6.8329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481050299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:06 Heat of formation + Delta-G solvation = -11.012091 kcal Electronic energy + Delta-G solvation = -27457.399395 eV Core-core repulsion = 23499.224617 eV Total energy + Delta-G solvation = -3958.174778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16975 -40.99935 -40.15042 -39.21925 -35.99313 -35.77627 -33.46501 -33.27939 -32.94335 -31.13068 -28.35550 -28.22040 -26.64864 -25.93045 -24.10776 -22.43550 -21.75062 -21.48563 -20.93803 -20.15416 -19.85004 -18.06791 -17.67828 -17.44886 -17.11936 -17.06971 -16.55569 -16.47743 -16.19899 -15.93385 -15.60420 -15.51752 -15.06662 -14.82183 -14.43398 -13.86434 -13.65925 -13.59171 -13.57560 -13.17487 -13.06395 -12.95568 -12.77184 -12.40988 -12.35441 -12.21296 -12.13889 -11.99470 -11.53720 -11.49985 -11.47632 -11.26440 -11.18548 -10.92266 -10.34545 -10.17225 -9.99760 -9.23486 -8.45962 -5.94445 -0.94648 -0.04644 0.30870 0.53149 1.33814 1.38151 1.52561 1.91935 2.03078 2.10484 2.26632 2.70022 2.74602 3.19593 3.32627 3.60061 3.69982 3.74004 3.78135 4.01684 4.11956 4.22238 4.27595 4.32762 4.36395 4.46992 4.59923 4.66026 4.77914 4.91447 5.01291 5.11137 5.17266 5.28043 5.39591 5.40107 5.87784 6.03832 6.12125 6.16545 6.50569 6.61070 6.91661 7.13619 7.56998 8.13283 8.71586 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.006717 B = 0.005225 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4167.752754 B = 5357.548386 C = 8991.136583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.330 4.330 8 H 0.075 0.925 9 N -0.573 5.573 10 C 0.442 3.558 11 O -0.615 6.615 12 C 0.056 3.944 13 N -0.523 5.523 14 C 0.052 3.948 15 C -0.130 4.130 16 C -0.107 4.107 17 C 0.054 3.946 18 H 0.081 0.919 19 C 0.135 3.865 20 N -0.702 5.702 21 C 0.603 3.397 22 O -0.554 6.554 23 C -0.052 4.052 24 C -0.233 4.233 25 S 0.556 5.444 26 N -0.335 5.335 27 N -0.238 5.238 28 H 0.277 0.723 29 H 0.394 0.606 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.406 0.594 41 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 -16.026 -8.775 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.460 4.460 8 H 0.093 0.907 9 N -0.211 5.211 10 C 0.229 3.771 11 O -0.500 6.500 12 C -0.076 4.076 13 N -0.248 5.248 14 C -0.076 4.076 15 C -0.168 4.168 16 C -0.145 4.145 17 C -0.054 4.054 18 H 0.098 0.902 19 C 0.012 3.988 20 N -0.355 5.355 21 C 0.385 3.615 22 O -0.432 6.432 23 C -0.200 4.200 24 C -0.390 4.390 25 S 0.691 5.309 26 N -0.315 5.315 27 N -0.107 5.107 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.245 0.755 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.153 -14.776 -9.369 17.982 hybrid contribution 0.043 0.294 1.071 1.111 sum -4.111 -14.482 -8.298 17.189 Atomic orbital electron populations 1.69684 1.06764 1.29093 1.50344 1.26004 0.96515 1.02262 0.96412 0.84927 0.77974 0.77347 0.78418 1.19970 1.19685 1.19283 1.19624 0.92453 0.84050 1.49855 0.90684 1.41915 1.09157 1.04704 1.65297 1.20728 0.88295 0.85835 0.82264 1.90486 1.15684 1.87839 1.56032 1.21989 0.93539 0.89679 1.02348 1.62991 1.30799 1.02907 1.28134 1.22693 0.99654 0.97385 0.87835 1.22779 1.03228 0.92967 0.97848 1.22652 1.01394 0.96648 0.93786 1.23012 0.98672 0.89731 0.93941 0.90159 1.21622 0.98349 0.89322 0.89510 1.46132 1.52217 1.30851 1.06263 1.16798 0.79653 0.82682 0.82409 1.90779 1.41698 1.41007 1.69709 1.22718 1.04334 0.99482 0.93475 1.29284 1.05455 1.05704 0.98522 1.81037 1.27714 1.09976 1.12138 1.78374 1.25606 1.22539 1.05027 1.71569 1.09014 0.99994 1.30124 0.91382 0.77236 0.90795 0.89012 0.92722 0.94456 0.89203 0.89985 0.90169 0.87150 0.91745 0.88396 0.75493 0.74814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.27 13.05 21.66 0.28 -50.99 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 3 Si 0.99 44.49 29.55 68.60 2.03 46.52 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -30.83 5.29 -306.98 -1.62 -32.45 16 10 C 0.44 22.06 7.60 87.65 0.67 22.72 16 11 O -0.61 -35.60 15.43 -3.07 -0.05 -35.64 16 12 C 0.06 2.04 4.92 85.56 0.42 2.46 16 13 N -0.52 -16.89 4.34 -865.19 -3.76 -20.65 16 14 C 0.05 1.58 5.99 86.65 0.52 2.10 16 15 C -0.13 -2.48 6.94 31.77 0.22 -2.26 16 16 C -0.11 -1.77 6.49 31.98 0.21 -1.56 16 17 C 0.05 1.22 2.66 45.38 0.12 1.34 16 18 H 0.08 1.55 7.81 -2.38 -0.02 1.53 16 19 C 0.14 3.29 5.39 86.38 0.47 3.75 16 20 N -0.70 -20.41 5.37 -466.36 -2.51 -22.91 16 21 C 0.60 18.78 7.81 86.67 0.68 19.46 16 22 O -0.55 -18.63 16.78 -4.05 -0.07 -18.70 16 23 C -0.05 -1.51 6.87 41.36 0.28 -1.23 16 24 C -0.23 -4.72 11.21 67.76 0.76 -3.96 16 25 S 0.56 10.06 23.38 -56.49 -1.32 8.74 16 26 N -0.33 -10.11 12.49 37.02 0.46 -9.65 16 27 N -0.24 -7.84 11.24 -50.34 -0.57 -8.40 16 28 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.39 20.39 7.90 -92.71 -0.73 19.65 16 30 H 0.07 2.36 7.78 -2.38 -0.02 2.34 16 31 H 0.09 3.09 4.98 -2.39 -0.01 3.08 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.24 7.36 -2.39 -0.02 1.22 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.38 8.06 -2.38 -0.02 1.36 16 37 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.06 1.83 8.11 -2.39 -0.02 1.81 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.41 12.21 4.98 -92.71 -0.46 11.75 16 41 H 0.24 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -80.15 360.50 -1.58 -81.73 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.09 Total: 38.49 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 5.62 Total: 23.93 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -7.71 Total: -145.06 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.12 Total: -54.35 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 10.06 SS G_CDS: -1.32 Total: 8.74 kcal Total: -80.15 -1.58 -81.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481050299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.716 kcal (2) G-P(sol) polarization free energy of solvation -80.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds