Wall clock time and date at job start Tue Mar 31 2020 22:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48502 * 109.47409 * 239.99908 * 3 2 1 5 5 H 1.48507 * 109.47374 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47378 * 120.00022 * 3 2 1 7 7 C 1.38949 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99694 * 359.71969 * 7 2 1 10 10 C 1.34776 * 119.99820 * 180.27556 * 9 7 2 11 11 O 1.21283 * 120.00101 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99667 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46806 * 179.97438 * 12 10 9 14 14 C 1.48551 * 111.00236 * 279.70855 * 13 12 10 15 15 C 1.54382 * 104.59647 * 200.95921 * 14 13 12 16 16 C 1.54260 * 105.05580 * 23.85378 * 15 14 13 17 17 C 1.48558 * 110.99658 * 164.28830 * 13 12 10 18 18 H 1.09001 * 110.40937 * 40.26720 * 17 13 12 19 19 C 1.53001 * 110.41491 * 277.94094 * 17 13 12 20 20 N 1.46498 * 109.47199 * 174.67444 * 19 17 13 21 21 C 1.34774 * 119.99810 * 184.88877 * 20 19 17 22 22 O 1.21604 * 120.00469 * 359.97438 * 21 20 19 23 23 C 1.47454 * 119.99724 * 180.02562 * 21 20 19 24 24 C 1.37989 * 124.15176 * 179.72521 * 23 21 20 25 25 S 1.72098 * 104.02817 * 179.89985 * 24 23 21 26 26 N 1.56400 * 96.15703 * 0.32538 * 25 24 23 27 27 N 1.27417 * 109.87719 * 359.80033 * 26 25 24 28 28 H 0.97000 * 120.00347 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99848 * 0.28047 * 9 7 2 30 30 H 1.08997 * 109.47141 * 300.00212 * 12 10 9 31 31 H 1.09003 * 109.47190 * 60.00379 * 12 10 9 32 32 H 1.09002 * 110.41366 * 319.74432 * 14 13 12 33 33 H 1.09005 * 110.40864 * 82.18491 * 14 13 12 34 34 H 1.08996 * 110.32382 * 264.96160 * 15 14 13 35 35 H 1.08991 * 110.41000 * 142.79125 * 15 14 13 36 36 H 1.09002 * 110.32382 * 241.10073 * 16 15 14 37 37 H 1.09003 * 110.32197 * 118.89773 * 16 15 14 38 38 H 1.08997 * 109.47014 * 294.67688 * 19 17 13 39 39 H 1.09003 * 109.47082 * 54.67798 * 19 17 13 40 40 H 0.96997 * 119.99976 * 4.89483 * 20 19 17 41 41 H 1.08000 * 127.98270 * 359.97167 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 0.0047 10 6 1.9973 -3.5578 0.0098 11 8 3.2102 -3.5578 0.0102 12 6 1.2438 -4.8629 0.0150 13 7 2.1985 -5.9794 0.0194 14 6 2.7221 -6.2375 -1.3466 15 6 3.2413 -7.6906 -1.2961 16 6 2.4567 -8.3567 -0.1471 17 6 1.5296 -7.2502 0.4001 18 1 0.5453 -7.3153 -0.0635 19 6 1.4097 -7.3551 1.9217 20 7 0.6369 -8.5502 2.2694 21 6 0.3177 -8.7956 3.5556 22 8 0.6716 -8.0254 4.4276 23 6 -0.4596 -9.9988 3.9056 24 6 -0.8280 -10.3360 5.1919 25 16 -1.7030 -11.8059 5.0035 26 7 -1.5504 -11.8939 3.4495 27 7 -0.8863 -10.8940 3.0220 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3906 0.0047 30 1 0.6168 -4.9169 0.9050 31 1 0.6174 -4.9244 -0.8749 32 1 1.9244 -6.1442 -2.0835 33 1 3.5365 -5.5507 -1.5775 34 1 4.3099 -7.7036 -1.0822 35 1 3.0381 -8.1997 -2.2382 36 1 3.1404 -8.6968 0.6308 37 1 1.8671 -9.1918 -0.5255 38 1 2.4049 -7.4255 2.3607 39 1 0.9038 -6.4703 2.3082 40 1 0.3551 -9.1648 1.5739 41 1 -0.6171 -9.8004 6.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481050302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:10 Heat of formation + Delta-G solvation = 11.735958 kcal Electronic energy + Delta-G solvation = -26242.219667 eV Core-core repulsion = 22285.031319 eV Total energy + Delta-G solvation = -3957.188349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48450 -39.81605 -38.99837 -37.59632 -34.97449 -33.86605 -32.62255 -32.02780 -31.09570 -30.12116 -27.56414 -26.74228 -25.57403 -24.19725 -23.29307 -21.35015 -20.97537 -20.36773 -19.48449 -19.12737 -17.84301 -17.29709 -16.49333 -16.33514 -16.08408 -15.78065 -15.59430 -15.05468 -14.95014 -14.52018 -14.38844 -14.06411 -13.78713 -13.52833 -13.14163 -13.05672 -12.69385 -12.51970 -12.29193 -11.99828 -11.81062 -11.44914 -11.17809 -11.14086 -10.97058 -10.85390 -10.83501 -10.53143 -10.51818 -10.45394 -10.41062 -10.38486 -10.17515 -9.44704 -9.29489 -8.54964 -8.02473 -7.91486 -6.37573 -3.78210 -0.39583 0.45281 1.03549 1.06901 2.74531 2.82869 3.23011 3.28233 3.32743 3.40023 3.94395 4.02269 4.23897 4.27934 4.48768 4.54462 4.64063 4.90359 4.93195 5.11721 5.20246 5.25896 5.29090 5.43157 5.64277 5.70658 5.76365 5.82996 5.87371 5.94523 6.03284 6.11072 6.21163 6.32292 6.35983 6.92744 7.05764 7.17133 7.24674 7.58865 7.81409 8.10213 8.66529 9.22558 9.59080 10.11441 10.80327 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.002202 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.766728 B =12713.421829 C =14006.921546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.447 3.553 11 O -0.574 6.574 12 C 0.031 3.969 13 N -0.474 5.474 14 C 0.040 3.960 15 C -0.123 4.123 16 C -0.120 4.120 17 C 0.047 3.953 18 H 0.058 0.942 19 C 0.131 3.869 20 N -0.706 5.706 21 C 0.602 3.398 22 O -0.519 6.519 23 C -0.021 4.021 24 C -0.235 4.235 25 S 0.462 5.538 26 N -0.290 5.290 27 N -0.211 5.211 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.409 0.591 41 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -25.354 6.615 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.100 4.100 13 N -0.198 5.198 14 C -0.088 4.088 15 C -0.161 4.161 16 C -0.158 4.158 17 C -0.062 4.062 18 H 0.076 0.924 19 C 0.008 3.992 20 N -0.357 5.357 21 C 0.383 3.617 22 O -0.393 6.393 23 C -0.168 4.168 24 C -0.392 4.392 25 S 0.598 5.402 26 N -0.271 5.271 27 N -0.082 5.082 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.244 0.756 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.928 -25.998 6.918 27.351 hybrid contribution -0.393 1.822 -0.587 1.954 sum -5.321 -24.176 6.331 25.552 Atomic orbital electron populations 1.69602 1.05920 1.28181 1.50819 1.25248 0.95627 0.99672 0.97459 0.85928 0.78753 0.80534 0.79055 1.19951 1.21029 1.19897 1.19639 0.93304 0.82214 1.47513 0.87996 1.41855 1.09134 1.04570 1.64854 1.19653 0.88392 0.84357 0.84388 1.90515 1.13606 1.86941 1.54699 1.22126 0.94112 0.92035 1.01757 1.64897 1.30417 1.00689 1.23833 1.23140 1.00179 0.96633 0.88830 1.22286 1.00751 0.95153 0.97883 1.22377 0.98128 0.96667 0.98596 1.22832 0.97212 0.91915 0.94277 0.92407 1.21380 0.96723 0.86612 0.94480 1.45763 1.55392 1.26893 1.07687 1.16589 0.79119 0.82710 0.83326 1.90893 1.53630 1.46652 1.48139 1.22720 1.05246 0.99337 0.89517 1.28929 1.03386 1.03632 1.03228 1.81587 1.37605 1.12892 1.08106 1.78645 1.19526 1.19578 1.09320 1.71523 1.08106 0.98213 1.30370 0.91885 0.77573 0.89449 0.92854 0.94168 0.88693 0.90862 0.91540 0.90700 0.91351 0.89850 0.90314 0.75574 0.77294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C 0.45 10.66 7.69 -10.98 -0.08 10.58 16 11 O -0.57 -15.70 15.29 5.55 0.08 -15.62 16 12 C 0.03 0.56 5.31 -4.97 -0.03 0.54 16 13 N -0.47 -7.69 4.56 -223.57 -1.02 -8.71 16 14 C 0.04 0.59 6.07 -2.19 -0.01 0.58 16 15 C -0.12 -1.39 7.00 -25.35 -0.18 -1.57 16 16 C -0.12 -1.23 6.35 -25.35 -0.16 -1.39 16 17 C 0.05 0.57 2.29 -66.07 -0.15 0.42 16 18 H 0.06 0.65 8.00 -51.93 -0.42 0.23 16 19 C 0.13 1.66 5.26 -4.04 -0.02 1.64 16 20 N -0.71 -7.63 5.45 -61.38 -0.33 -7.96 16 21 C 0.60 7.30 7.81 -12.51 -0.10 7.20 16 22 O -0.52 -7.93 16.79 5.27 0.09 -7.84 16 23 C -0.02 -0.21 6.87 -83.78 -0.58 -0.78 16 24 C -0.23 -1.64 11.21 30.64 0.34 -1.30 16 25 S 0.46 2.40 23.38 -107.50 -2.51 -0.11 16 26 N -0.29 -2.61 12.49 60.35 0.75 -1.85 16 27 N -0.21 -2.14 11.24 32.74 0.37 -1.77 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 30 H 0.09 1.44 7.02 -51.93 -0.36 1.07 16 31 H 0.05 0.86 7.64 -51.93 -0.40 0.47 16 32 H 0.04 0.56 7.67 -51.93 -0.40 0.16 16 33 H 0.09 1.67 7.65 -51.93 -0.40 1.27 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.77 7.74 -51.93 -0.40 0.37 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.15 7.97 -51.93 -0.41 0.73 16 39 H 0.08 1.14 7.17 -51.93 -0.37 0.76 16 40 H 0.41 3.68 7.96 -40.82 -0.33 3.36 16 41 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -34.46 364.10 -7.66 -42.12 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.01 Total: 10.86 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -1.21 Total: 7.87 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.43 Total: -59.10 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.51 Total: -0.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.46 -7.66 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481050302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.852 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds