Wall clock time and date at job start Tue Mar 31 2020 22:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48502 * 109.47409 * 239.99908 * 3 2 1 5 5 H 1.48507 * 109.47374 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47378 * 120.00022 * 3 2 1 7 7 C 1.38949 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99694 * 359.71969 * 7 2 1 10 10 C 1.34776 * 119.99820 * 180.27556 * 9 7 2 11 11 O 1.21283 * 120.00101 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99667 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46806 * 179.97438 * 12 10 9 14 14 C 1.48551 * 111.00236 * 279.70855 * 13 12 10 15 15 C 1.54382 * 104.59647 * 200.95921 * 14 13 12 16 16 C 1.54260 * 105.05580 * 23.85378 * 15 14 13 17 17 C 1.48558 * 110.99658 * 164.28830 * 13 12 10 18 18 H 1.09001 * 110.40937 * 40.26720 * 17 13 12 19 19 C 1.53001 * 110.41491 * 277.94094 * 17 13 12 20 20 N 1.46498 * 109.47199 * 174.67444 * 19 17 13 21 21 C 1.34774 * 119.99810 * 184.88877 * 20 19 17 22 22 O 1.21604 * 120.00469 * 359.97438 * 21 20 19 23 23 C 1.47454 * 119.99724 * 180.02562 * 21 20 19 24 24 C 1.37989 * 124.15176 * 179.72521 * 23 21 20 25 25 S 1.72098 * 104.02817 * 179.89985 * 24 23 21 26 26 N 1.56400 * 96.15703 * 0.32538 * 25 24 23 27 27 N 1.27417 * 109.87719 * 359.80033 * 26 25 24 28 28 H 0.97000 * 120.00347 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99848 * 0.28047 * 9 7 2 30 30 H 1.08997 * 109.47141 * 300.00212 * 12 10 9 31 31 H 1.09003 * 109.47190 * 60.00379 * 12 10 9 32 32 H 1.09002 * 110.41366 * 319.74432 * 14 13 12 33 33 H 1.09005 * 110.40864 * 82.18491 * 14 13 12 34 34 H 1.08996 * 110.32382 * 264.96160 * 15 14 13 35 35 H 1.08991 * 110.41000 * 142.79125 * 15 14 13 36 36 H 1.09002 * 110.32382 * 241.10073 * 16 15 14 37 37 H 1.09003 * 110.32197 * 118.89773 * 16 15 14 38 38 H 1.08997 * 109.47014 * 294.67688 * 19 17 13 39 39 H 1.09003 * 109.47082 * 54.67798 * 19 17 13 40 40 H 0.96997 * 119.99976 * 4.89483 * 20 19 17 41 41 H 1.08000 * 127.98270 * 359.97167 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 0.0047 10 6 1.9973 -3.5578 0.0098 11 8 3.2102 -3.5578 0.0102 12 6 1.2438 -4.8629 0.0150 13 7 2.1985 -5.9794 0.0194 14 6 2.7221 -6.2375 -1.3466 15 6 3.2413 -7.6906 -1.2961 16 6 2.4567 -8.3567 -0.1471 17 6 1.5296 -7.2502 0.4001 18 1 0.5453 -7.3153 -0.0635 19 6 1.4097 -7.3551 1.9217 20 7 0.6369 -8.5502 2.2694 21 6 0.3177 -8.7956 3.5556 22 8 0.6716 -8.0254 4.4276 23 6 -0.4596 -9.9988 3.9056 24 6 -0.8280 -10.3360 5.1919 25 16 -1.7030 -11.8059 5.0035 26 7 -1.5504 -11.8939 3.4495 27 7 -0.8863 -10.8940 3.0220 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3906 0.0047 30 1 0.6168 -4.9169 0.9050 31 1 0.6174 -4.9244 -0.8749 32 1 1.9244 -6.1442 -2.0835 33 1 3.5365 -5.5507 -1.5775 34 1 4.3099 -7.7036 -1.0822 35 1 3.0381 -8.1997 -2.2382 36 1 3.1404 -8.6968 0.6308 37 1 1.8671 -9.1918 -0.5255 38 1 2.4049 -7.4255 2.3607 39 1 0.9038 -6.4703 2.3082 40 1 0.3551 -9.1648 1.5739 41 1 -0.6171 -9.8004 6.1057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481050302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:09 Heat of formation + Delta-G solvation = -16.841560 kcal Electronic energy + Delta-G solvation = -26243.458881 eV Core-core repulsion = 22285.031319 eV Total energy + Delta-G solvation = -3958.427563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16857 -40.90538 -40.22598 -39.24312 -36.09115 -35.82211 -33.46518 -33.29417 -32.96271 -31.09123 -28.33563 -28.21061 -26.59425 -25.95788 -24.15792 -22.35821 -21.84455 -21.33552 -20.98851 -20.27123 -19.87454 -18.07344 -17.64875 -17.35405 -17.15853 -16.90782 -16.57919 -16.42029 -16.03085 -15.98289 -15.80874 -15.57824 -15.16896 -14.57504 -14.50561 -14.20188 -13.72396 -13.68364 -13.51153 -13.09297 -13.08103 -12.93674 -12.91800 -12.43158 -12.31566 -12.16275 -12.12267 -11.89879 -11.60151 -11.49095 -11.36564 -11.29249 -11.18498 -10.90744 -10.35674 -10.26872 -10.00669 -9.40899 -8.46136 -5.94833 -0.94629 -0.06237 0.29184 0.52946 1.39301 1.40597 1.51715 1.85896 1.97182 2.06409 2.28928 2.66724 2.88582 3.20040 3.36396 3.55875 3.61855 3.70891 3.87935 3.99606 4.16045 4.19906 4.30141 4.35468 4.40303 4.44373 4.52213 4.66682 4.77169 4.93093 5.01707 5.04350 5.17703 5.23052 5.29768 5.40702 5.84164 5.93475 6.07368 6.17344 6.51785 6.61296 6.93945 7.13522 7.57077 8.13498 8.71286 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.002202 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.766728 B =12713.421829 C =14006.921546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.444 3.556 11 O -0.614 6.614 12 C 0.046 3.954 13 N -0.503 5.503 14 C 0.036 3.964 15 C -0.114 4.114 16 C -0.112 4.112 17 C 0.054 3.946 18 H 0.078 0.922 19 C 0.139 3.861 20 N -0.693 5.693 21 C 0.602 3.398 22 O -0.559 6.559 23 C -0.044 4.044 24 C -0.240 4.240 25 S 0.567 5.433 26 N -0.330 5.330 27 N -0.229 5.229 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.420 0.580 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 -27.433 6.877 29.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.215 5.215 10 C 0.231 3.769 11 O -0.500 6.500 12 C -0.086 4.086 13 N -0.227 5.227 14 C -0.091 4.091 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.055 4.055 18 H 0.096 0.904 19 C 0.015 3.985 20 N -0.345 5.345 21 C 0.384 3.616 22 O -0.437 6.437 23 C -0.192 4.192 24 C -0.396 4.396 25 S 0.702 5.298 26 N -0.311 5.311 27 N -0.099 5.099 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.258 0.742 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.376 -28.121 7.147 29.707 hybrid contribution 0.001 2.346 -0.554 2.410 sum -6.374 -25.775 6.593 27.358 Atomic orbital electron populations 1.69666 1.06823 1.29309 1.50517 1.26040 0.96565 1.02406 0.96386 0.84998 0.77769 0.76673 0.78947 1.19586 1.19422 1.19839 1.19611 0.92644 0.84012 1.49859 0.90394 1.41938 1.09246 1.04729 1.65561 1.20735 0.88284 0.85824 0.82082 1.90482 1.15723 1.87857 1.55936 1.21937 0.93799 0.89440 1.03428 1.64771 1.31067 1.01916 1.24979 1.23116 0.99394 0.98164 0.88455 1.22256 1.00395 0.92898 0.99690 1.22393 0.97914 0.96636 0.98074 1.22853 0.98402 0.90494 0.93750 0.90421 1.21148 0.95838 0.86618 0.94869 1.45600 1.54713 1.26315 1.07861 1.16890 0.78661 0.82997 0.83048 1.90866 1.55404 1.48266 1.49170 1.22444 1.06690 0.99225 0.90807 1.29292 1.02697 1.04685 1.02945 1.81226 1.34223 1.09827 1.04518 1.78318 1.20393 1.19861 1.12483 1.71554 1.08815 0.98506 1.30983 0.91330 0.77128 0.88032 0.90588 0.93049 0.92528 0.91488 0.88815 0.90827 0.88086 0.91424 0.92454 0.74234 0.75753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 3 Si 0.99 43.96 29.55 68.60 2.03 45.99 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.58 -30.56 5.29 -306.99 -1.62 -32.19 16 10 C 0.44 21.86 7.69 87.66 0.67 22.54 16 11 O -0.61 -35.17 15.29 -3.04 -0.05 -35.21 16 12 C 0.05 1.63 5.31 85.56 0.45 2.08 16 13 N -0.50 -16.25 4.56 -861.23 -3.93 -20.18 16 14 C 0.04 1.07 6.07 86.45 0.53 1.60 16 15 C -0.11 -2.39 7.00 31.49 0.22 -2.17 16 16 C -0.11 -2.04 6.35 31.49 0.20 -1.84 16 17 C 0.05 1.23 2.29 45.06 0.10 1.33 16 18 H 0.08 1.52 8.00 -2.39 -0.02 1.50 16 19 C 0.14 3.51 5.26 86.38 0.45 3.96 16 20 N -0.69 -14.49 5.45 -466.35 -2.54 -17.03 16 21 C 0.60 14.49 7.81 86.67 0.68 15.16 16 22 O -0.56 -17.47 16.79 -4.04 -0.07 -17.54 16 23 C -0.04 -0.82 6.87 41.36 0.28 -0.54 16 24 C -0.24 -2.89 11.21 67.76 0.76 -2.13 16 25 S 0.57 4.27 23.38 -56.49 -1.32 2.94 16 26 N -0.33 -5.26 12.49 37.02 0.46 -4.80 16 27 N -0.23 -4.31 11.24 -50.34 -0.57 -4.87 16 28 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 30 H 0.10 3.33 7.02 -2.39 -0.02 3.31 16 31 H 0.08 2.37 7.64 -2.39 -0.02 2.35 16 32 H 0.05 1.38 7.67 -2.39 -0.02 1.36 16 33 H 0.06 2.08 7.65 -2.38 -0.02 2.06 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.39 7.74 -2.39 -0.02 1.37 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.91 7.97 -2.39 -0.02 1.89 16 39 H 0.06 1.69 7.17 -2.39 -0.02 1.68 16 40 H 0.42 6.88 7.96 -92.71 -0.74 6.14 16 41 H 0.23 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -78.00 364.10 -2.05 -80.05 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.37 Total: 32.29 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 5.63 Total: 21.15 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -7.91 Total: -129.67 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.11 Total: -52.75 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.32 Total: 2.94 kcal Total: -78.00 -2.05 -80.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481050302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.212 kcal (2) G-P(sol) polarization free energy of solvation -77.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds