Wall clock time and date at job start Tue Mar 31 2020 22:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00444 * 2 1 4 4 H 1.48500 * 109.46928 * 270.00021 * 3 2 1 5 5 H 1.48501 * 109.46707 * 29.99379 * 3 2 1 6 6 H 1.48500 * 109.47264 * 149.99792 * 3 2 1 7 7 C 1.38952 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00452 * 179.97438 * 7 2 1 9 9 N 1.37107 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.34785 * 119.99604 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99969 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99909 * 179.97438 * 10 9 7 13 13 N 1.46889 * 109.47165 * 179.97438 * 12 10 9 14 14 C 1.47841 * 111.00132 * 69.15959 * 13 12 10 15 15 C 1.54908 * 104.79834 * 146.36688 * 14 13 12 16 16 C 1.55143 * 101.64832 * 322.92651 * 15 14 13 17 17 H 1.09000 * 110.85530 * 277.19878 * 16 15 14 18 18 C 1.53005 * 110.70113 * 154.03994 * 16 15 14 19 19 N 1.46491 * 109.47493 * 71.40178 * 18 16 15 20 20 C 1.34774 * 120.00402 * 179.97438 * 19 18 16 21 21 O 1.21567 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.47750 * 120.00260 * 180.02562 * 20 19 18 23 23 C 1.39353 * 124.11571 * 179.97438 * 22 20 19 24 24 N 1.30096 * 112.14649 * 179.72928 * 23 22 20 25 25 S 1.55928 * 108.75112 * 0.27215 * 24 23 22 26 26 N 1.31492 * 124.11920 * 0.24220 * 22 20 19 27 27 C 1.47450 * 111.00171 * 190.00147 * 13 12 10 28 28 H 0.97002 * 119.99738 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00629 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47046 * 60.00002 * 12 10 9 31 31 H 1.09007 * 109.47008 * 300.00484 * 12 10 9 32 32 H 1.09002 * 110.37238 * 265.19369 * 14 13 12 33 33 H 1.08997 * 110.37608 * 27.42259 * 14 13 12 34 34 H 1.09003 * 110.99195 * 204.84305 * 15 14 13 35 35 H 1.08997 * 110.99588 * 81.02139 * 15 14 13 36 36 H 1.09002 * 109.46936 * 311.39556 * 18 16 15 37 37 H 1.09010 * 109.46657 * 191.40151 * 18 16 15 38 38 H 0.97000 * 119.99938 * 359.97438 * 19 18 16 39 39 H 1.08002 * 123.93051 * 0.02562 * 23 22 20 40 40 H 1.09003 * 109.88821 * 117.33318 * 27 13 12 41 41 H 1.09000 * 110.02231 * 356.22365 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5580 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1981 -5.9795 0.0027 14 6 2.9156 -6.0626 1.2926 15 6 3.1540 -7.5769 1.5160 16 6 1.8425 -8.1866 0.9545 17 1 1.0487 -8.1537 1.7008 18 6 2.0742 -9.6216 0.4769 19 7 2.2682 -10.4966 1.6356 20 6 2.4898 -11.8138 1.4559 21 8 2.5292 -12.2758 0.3321 22 6 2.6848 -12.6965 2.6246 23 6 2.9186 -14.0675 2.5382 24 7 3.0617 -14.6154 3.7095 25 16 2.9086 -13.5123 4.8009 26 7 2.6540 -12.2848 3.8730 27 6 1.5110 -7.2622 -0.2358 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 0.0005 30 1 0.6172 -4.9213 -0.8880 31 1 0.6165 -4.9201 0.8920 32 1 3.8667 -5.5336 1.2325 33 1 2.3032 -5.6508 2.0947 34 1 3.2665 -7.8022 2.5765 35 1 4.0190 -7.9236 0.9508 36 1 2.9609 -9.6550 -0.1562 37 1 1.2082 -9.9593 -0.0925 38 1 2.2371 -10.1280 2.5323 39 1 2.9791 -14.6113 1.6070 40 1 1.8702 -7.7084 -1.1632 41 1 0.4342 -7.1037 -0.2936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481079798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:20 Heat of formation + Delta-G solvation = -3.126627 kcal Electronic energy + Delta-G solvation = -25668.156489 eV Core-core repulsion = 21710.323650 eV Total energy + Delta-G solvation = -3957.832839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59329 -39.78446 -39.03319 -37.65291 -35.35838 -34.14218 -33.84172 -32.00762 -31.16203 -29.56403 -28.15504 -27.08573 -25.29946 -24.06477 -23.07804 -21.22851 -20.89637 -20.31576 -19.88989 -19.19575 -18.15896 -17.87140 -16.71337 -16.56394 -16.04629 -15.77506 -15.66173 -15.17965 -14.85079 -14.53324 -14.39323 -13.91787 -13.85966 -13.66440 -13.21141 -12.79452 -12.71522 -12.46816 -12.10343 -11.96428 -11.74095 -11.71775 -11.55977 -11.48272 -11.29758 -11.17104 -10.98193 -10.91491 -10.65484 -10.53600 -10.38703 -10.20613 -9.77783 -9.48252 -9.43124 -8.43710 -7.95948 -7.86933 -6.40415 -3.81033 -0.10312 0.85803 1.04368 1.09761 2.63645 2.67712 3.18592 3.26984 3.32732 3.92735 3.94983 4.03209 4.25276 4.29531 4.43509 4.49583 4.58441 4.75738 4.97034 5.10149 5.15014 5.23701 5.29701 5.40893 5.45046 5.56759 5.71031 5.78645 5.80980 5.84282 5.90967 5.97407 6.02549 6.22232 6.30558 6.46089 7.01781 7.25029 7.27587 7.56398 7.65598 8.07950 8.63790 9.19891 9.56415 10.08613 10.77471 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.001648 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.547240 B =16981.219646 C =17375.814105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.040 3.960 13 N -0.504 5.504 14 C 0.053 3.947 15 C -0.126 4.126 16 C -0.125 4.125 17 H 0.083 0.917 18 C 0.130 3.870 19 N -0.705 5.705 20 C 0.603 3.397 21 O -0.522 6.522 22 C 0.011 3.989 23 C 0.090 3.910 24 N -0.578 5.578 25 S 0.724 5.276 26 N -0.548 5.548 27 C 0.051 3.949 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.410 0.590 39 H 0.215 0.785 40 H 0.081 0.919 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -26.903 9.139 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.091 4.091 13 N -0.228 5.228 14 C -0.074 4.074 15 C -0.164 4.164 16 C -0.144 4.144 17 H 0.101 0.899 18 C 0.007 3.993 19 N -0.356 5.356 20 C 0.383 3.617 21 O -0.397 6.397 22 C -0.164 4.164 23 C -0.103 4.103 24 N -0.419 5.419 25 S 0.766 5.234 26 N -0.398 5.398 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.232 0.768 40 H 0.099 0.901 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.744 -27.095 10.004 28.936 hybrid contribution -1.052 1.052 -0.709 1.648 sum 0.692 -26.043 9.295 27.661 Atomic orbital electron populations 1.69612 1.05921 1.28082 1.50837 1.25251 0.95633 0.99684 0.97443 0.85862 0.79196 0.80858 0.78391 1.20412 1.20981 1.19466 1.19694 0.93340 0.82231 1.47453 0.87952 1.41866 1.09143 1.04590 1.64768 1.19748 0.88429 0.84520 0.84329 1.90507 1.13678 1.87005 1.54875 1.22122 0.93946 0.91647 1.01420 1.63265 1.25499 1.01046 1.33006 1.23024 1.00541 0.94685 0.89194 1.22869 0.96866 0.95934 1.00723 1.22679 0.99096 0.93499 0.99170 0.89911 1.21500 1.02642 0.87814 0.87320 1.45821 1.71341 1.06992 1.11473 1.16718 0.77404 0.81714 0.85851 1.90858 1.50998 1.74981 1.22882 1.22540 1.08033 0.94800 0.91016 1.23810 0.98075 0.91282 0.97139 1.72283 1.24109 1.38494 1.07011 1.79159 1.44869 0.81534 1.17860 1.72436 1.21188 1.37960 1.08244 1.22821 0.97869 0.89500 0.97586 0.91931 0.77551 0.89378 0.93399 0.88750 0.94018 0.91120 0.90353 0.90255 0.90693 0.75434 0.76824 0.90070 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.34 5.29 -10.96 -0.06 -14.39 16 10 C 0.44 10.46 7.58 -10.98 -0.08 10.37 16 11 O -0.58 -15.54 14.61 5.55 0.08 -15.46 16 12 C 0.04 0.71 5.06 -4.98 -0.03 0.68 16 13 N -0.50 -8.11 4.86 -232.70 -1.13 -9.24 16 14 C 0.05 0.80 5.75 -2.30 -0.01 0.79 16 15 C -0.13 -1.36 6.44 -24.59 -0.16 -1.52 16 16 C -0.12 -1.17 2.96 -88.80 -0.26 -1.43 16 17 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 18 C 0.13 1.14 4.97 -4.04 -0.02 1.12 16 19 N -0.70 -5.98 5.47 -61.28 -0.34 -6.31 16 20 C 0.60 5.91 7.82 -12.37 -0.10 5.82 16 21 O -0.52 -6.45 16.80 5.31 0.09 -6.36 16 22 C 0.01 0.09 6.81 -83.71 -0.57 -0.48 16 23 C 0.09 0.68 11.22 -17.87 -0.20 0.47 16 24 N -0.58 -4.33 11.41 19.43 0.22 -4.11 16 25 S 0.72 3.96 23.69 -107.50 -2.55 1.41 16 26 N -0.55 -4.16 11.00 23.18 0.26 -3.90 16 27 C 0.05 0.59 6.45 -2.84 -0.02 0.58 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 30 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 31 H 0.05 0.76 7.85 -51.92 -0.41 0.36 16 32 H 0.09 1.71 7.38 -51.93 -0.38 1.32 16 33 H 0.04 0.64 7.62 -51.93 -0.40 0.24 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 36 H 0.08 0.77 8.00 -51.93 -0.42 0.35 16 37 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.41 3.04 8.06 -40.82 -0.33 2.71 16 39 H 0.22 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.08 0.91 7.82 -51.93 -0.41 0.51 16 41 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -33.57 363.40 -9.02 -42.59 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.08 Total: 9.64 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -1.69 Total: 8.44 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.32 Total: -61.79 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.17 Total: -21.82 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -2.55 Total: 1.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.57 -9.02 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481079798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.465 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds