Wall clock time and date at job start Tue Mar 31 2020 22:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00444 * 2 1 4 4 H 1.48500 * 109.46928 * 270.00021 * 3 2 1 5 5 H 1.48501 * 109.46707 * 29.99379 * 3 2 1 6 6 H 1.48500 * 109.47264 * 149.99792 * 3 2 1 7 7 C 1.38952 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00452 * 179.97438 * 7 2 1 9 9 N 1.37107 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.34785 * 119.99604 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99969 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99909 * 179.97438 * 10 9 7 13 13 N 1.46889 * 109.47165 * 179.97438 * 12 10 9 14 14 C 1.47841 * 111.00132 * 69.15959 * 13 12 10 15 15 C 1.54908 * 104.79834 * 146.36688 * 14 13 12 16 16 C 1.55143 * 101.64832 * 322.92651 * 15 14 13 17 17 H 1.09000 * 110.85530 * 277.19878 * 16 15 14 18 18 C 1.53005 * 110.70113 * 154.03994 * 16 15 14 19 19 N 1.46491 * 109.47493 * 71.40178 * 18 16 15 20 20 C 1.34774 * 120.00402 * 179.97438 * 19 18 16 21 21 O 1.21567 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.47750 * 120.00260 * 180.02562 * 20 19 18 23 23 C 1.39353 * 124.11571 * 179.97438 * 22 20 19 24 24 N 1.30096 * 112.14649 * 179.72928 * 23 22 20 25 25 S 1.55928 * 108.75112 * 0.27215 * 24 23 22 26 26 N 1.31492 * 124.11920 * 0.24220 * 22 20 19 27 27 C 1.47450 * 111.00171 * 190.00147 * 13 12 10 28 28 H 0.97002 * 119.99738 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00629 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47046 * 60.00002 * 12 10 9 31 31 H 1.09007 * 109.47008 * 300.00484 * 12 10 9 32 32 H 1.09002 * 110.37238 * 265.19369 * 14 13 12 33 33 H 1.08997 * 110.37608 * 27.42259 * 14 13 12 34 34 H 1.09003 * 110.99195 * 204.84305 * 15 14 13 35 35 H 1.08997 * 110.99588 * 81.02139 * 15 14 13 36 36 H 1.09002 * 109.46936 * 311.39556 * 18 16 15 37 37 H 1.09010 * 109.46657 * 191.40151 * 18 16 15 38 38 H 0.97000 * 119.99938 * 359.97438 * 19 18 16 39 39 H 1.08002 * 123.93051 * 0.02562 * 23 22 20 40 40 H 1.09003 * 109.88821 * 117.33318 * 27 13 12 41 41 H 1.09000 * 110.02231 * 356.22365 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5580 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1981 -5.9795 0.0027 14 6 2.9156 -6.0626 1.2926 15 6 3.1540 -7.5769 1.5160 16 6 1.8425 -8.1866 0.9545 17 1 1.0487 -8.1537 1.7008 18 6 2.0742 -9.6216 0.4769 19 7 2.2682 -10.4966 1.6356 20 6 2.4898 -11.8138 1.4559 21 8 2.5292 -12.2758 0.3321 22 6 2.6848 -12.6965 2.6246 23 6 2.9186 -14.0675 2.5382 24 7 3.0617 -14.6154 3.7095 25 16 2.9086 -13.5123 4.8009 26 7 2.6540 -12.2848 3.8730 27 6 1.5110 -7.2622 -0.2358 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 0.0005 30 1 0.6172 -4.9213 -0.8880 31 1 0.6165 -4.9201 0.8920 32 1 3.8667 -5.5336 1.2325 33 1 2.3032 -5.6508 2.0947 34 1 3.2665 -7.8022 2.5765 35 1 4.0190 -7.9236 0.9508 36 1 2.9609 -9.6550 -0.1562 37 1 1.2082 -9.9593 -0.0925 38 1 2.2371 -10.1280 2.5323 39 1 2.9791 -14.6113 1.6070 40 1 1.8702 -7.7084 -1.1632 41 1 0.4342 -7.1037 -0.2936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481079798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:19 Heat of formation + Delta-G solvation = -31.028489 kcal Electronic energy + Delta-G solvation = -25669.366405 eV Core-core repulsion = 21710.323650 eV Total energy + Delta-G solvation = -3959.042754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.17429 -40.80157 -40.12443 -39.18344 -36.29779 -35.82704 -34.69408 -33.35913 -32.89583 -30.55390 -28.98402 -28.31680 -26.58066 -25.50002 -23.74452 -22.34655 -21.69660 -21.13452 -20.95658 -20.39513 -19.87277 -18.83264 -17.93660 -17.30388 -17.14913 -16.76825 -16.51685 -16.38603 -16.11120 -15.91474 -15.65722 -15.55907 -14.89850 -14.55972 -14.52650 -14.25643 -13.63952 -13.54021 -13.30570 -13.19178 -12.99622 -12.84345 -12.52466 -12.41727 -12.32840 -12.27689 -12.11841 -12.10638 -12.09217 -11.86597 -11.65020 -11.46919 -11.26730 -10.35888 -10.28076 -10.06976 -9.99361 -9.16227 -8.45602 -5.94018 -0.65757 0.34749 0.45132 0.62373 1.38219 1.41656 1.54270 1.96778 1.99580 2.07908 2.29508 2.86111 3.21221 3.36271 3.42386 3.57420 3.63620 3.73837 3.91189 4.02788 4.29270 4.33538 4.34463 4.39480 4.48681 4.51337 4.56505 4.66270 4.78302 4.86529 4.96637 5.06427 5.18492 5.22603 5.32229 5.39181 5.41832 5.91391 6.07244 6.18674 6.35537 6.62727 6.97370 7.14676 7.58545 8.14980 8.71846 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032530 B = 0.001648 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.547240 B =16981.219646 C =17375.814105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.617 6.617 12 C 0.054 3.946 13 N -0.530 5.530 14 C 0.051 3.949 15 C -0.114 4.114 16 C -0.107 4.107 17 H 0.101 0.899 18 C 0.137 3.863 19 N -0.697 5.697 20 C 0.604 3.396 21 O -0.554 6.554 22 C -0.005 4.005 23 C 0.088 3.912 24 N -0.601 5.601 25 S 0.793 5.207 26 N -0.562 5.562 27 C 0.049 3.951 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.417 0.583 39 H 0.224 0.776 40 H 0.085 0.915 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 -27.989 10.212 29.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.503 6.503 12 C -0.078 4.078 13 N -0.255 5.255 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.126 4.126 17 H 0.119 0.881 18 C 0.014 3.986 19 N -0.349 5.349 20 C 0.385 3.615 21 O -0.432 6.432 22 C -0.178 4.178 23 C -0.104 4.104 24 N -0.443 5.443 25 S 0.834 5.166 26 N -0.415 5.415 27 C -0.079 4.079 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.254 0.746 39 H 0.240 0.760 40 H 0.103 0.897 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.742 -28.193 11.074 30.299 hybrid contribution -0.714 1.337 -0.945 1.786 sum 0.027 -26.856 10.129 28.703 Atomic orbital electron populations 1.69670 1.06770 1.29212 1.50529 1.26017 0.96556 1.02335 0.96408 0.84939 0.77864 0.76985 0.78610 1.19725 1.19492 1.19864 1.19642 0.92629 0.84074 1.49813 0.90473 1.41939 1.09270 1.04693 1.65498 1.20869 0.88336 0.86018 0.82028 1.90482 1.15817 1.87912 1.56067 1.21980 0.93606 0.88809 1.03385 1.63144 1.26228 1.02471 1.33658 1.22916 0.98509 0.97302 0.88930 1.22787 0.97579 0.92657 1.02176 1.22530 0.98557 0.93078 0.98454 0.88127 1.21381 1.02536 0.87378 0.87338 1.45744 1.70740 1.06649 1.11719 1.16881 0.76781 0.82014 0.85867 1.90838 1.52575 1.75580 1.24179 1.22290 1.09803 0.94900 0.90823 1.23907 0.97805 0.91106 0.97598 1.72199 1.24891 1.39714 1.07540 1.78899 1.42009 0.79723 1.15928 1.72281 1.21466 1.39391 1.08316 1.22889 0.98606 0.87698 0.98677 0.91351 0.77045 0.87303 0.91170 0.92840 0.94360 0.88956 0.90840 0.91156 0.90081 0.74621 0.75975 0.89661 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.58 -29.74 5.29 -306.97 -1.62 -31.36 16 10 C 0.44 21.10 7.58 87.66 0.66 21.77 16 11 O -0.62 -34.54 14.61 -3.07 -0.04 -34.58 16 12 C 0.05 1.83 5.06 85.56 0.43 2.26 16 13 N -0.53 -16.66 4.86 -890.12 -4.33 -20.99 16 14 C 0.05 1.55 5.75 86.77 0.50 2.05 16 15 C -0.11 -2.29 6.44 31.98 0.21 -2.09 16 16 C -0.11 -1.73 2.96 -9.61 -0.03 -1.76 16 17 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 18 C 0.14 2.13 4.97 86.38 0.43 2.56 16 19 N -0.70 -10.53 5.47 -466.06 -2.55 -13.08 16 20 C 0.60 11.17 7.82 86.76 0.68 11.85 16 21 O -0.55 -13.40 16.80 -3.93 -0.07 -13.46 16 22 C -0.01 -0.08 6.81 41.98 0.29 0.21 16 23 C 0.09 1.21 11.22 85.22 0.96 2.17 16 24 N -0.60 -8.05 11.41 -92.43 -1.05 -9.10 16 25 S 0.79 6.97 23.69 -56.49 -1.34 5.63 16 26 N -0.56 -7.45 11.00 -80.58 -0.89 -8.34 16 27 C 0.05 1.03 6.45 86.64 0.56 1.59 16 28 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 30 H 0.11 3.26 8.03 -2.39 -0.02 3.24 16 31 H 0.07 2.10 7.85 -2.38 -0.02 2.08 16 32 H 0.05 2.04 7.38 -2.39 -0.02 2.02 16 33 H 0.04 1.16 7.62 -2.39 -0.02 1.14 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.57 7.94 -2.39 -0.02 1.55 16 36 H 0.07 1.26 8.00 -2.39 -0.02 1.24 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.42 5.18 8.06 -92.71 -0.75 4.43 16 39 H 0.22 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.09 1.75 7.82 -2.39 -0.02 1.73 16 41 H 0.08 1.36 7.56 -2.39 -0.02 1.35 16 Total: -1.00 -74.17 363.40 -4.00 -78.16 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.38 Total: 29.24 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.96 Total: 22.16 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -10.16 Total: -132.35 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.11 Total: -48.04 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.34 Total: 5.63 kcal Total: -74.17 -4.00 -78.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481079798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.135 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds