Wall clock time and date at job start Tue Mar 31 2020 22:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99785 * 2 1 4 4 H 1.48496 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47026 * 299.99685 * 3 2 1 6 6 H 1.48503 * 109.47055 * 59.99606 * 3 2 1 7 7 C 1.38799 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99718 * 180.02562 * 7 2 1 9 9 S 1.76188 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99890 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47256 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.47860 * 126.92931 * 359.97356 * 13 11 10 15 15 C 1.56026 * 105.20319 * 181.92223 * 14 13 11 16 16 H 1.08998 * 116.25717 * 158.89926 * 15 14 13 17 17 C 1.57351 * 99.48093 * 32.81152 * 15 14 13 18 18 C 1.49283 * 126.92526 * 180.02562 * 13 11 10 19 19 H 1.08991 * 116.12695 * 16.82011 * 18 13 11 20 20 C 1.56009 * 104.12711 * 246.85071 * 18 13 11 21 21 N 1.48463 * 105.11121 * 288.85671 * 20 18 13 22 22 C 1.46894 * 110.97617 * 122.47472 * 21 20 18 23 23 C 1.50699 * 109.47096 * 188.21279 * 22 21 20 24 24 N 1.30894 * 125.91679 * 275.02622 * 23 22 21 25 25 C 1.33542 * 109.78106 * 179.97438 * 24 23 22 26 26 O 1.35864 * 125.58246 * 180.02562 * 25 24 23 27 27 N 1.31073 * 108.82509 * 0.02562 * 25 24 23 28 28 N 1.34359 * 125.90812 * 94.71803 * 23 22 21 29 29 H 0.96990 * 126.77754 * 0.02562 * 28 23 22 30 30 H 0.97001 * 120.00675 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46790 * 60.00188 * 10 9 7 32 32 H 1.09000 * 109.47266 * 299.99728 * 10 9 7 33 33 H 1.09003 * 110.31626 * 300.88476 * 14 13 11 34 34 H 1.09000 * 110.31524 * 62.96110 * 14 13 11 35 35 H 1.08994 * 112.34136 * 191.74891 * 17 15 14 36 36 H 1.08997 * 112.43758 * 64.36796 * 17 15 14 37 37 H 1.09005 * 110.32393 * 47.69787 * 20 18 13 38 38 H 1.09001 * 110.32509 * 169.89780 * 20 18 13 39 39 H 1.08999 * 109.47512 * 308.21228 * 22 21 20 40 40 H 1.08999 * 109.47260 * 68.21655 * 22 21 20 41 41 H 0.96699 * 114.00158 * 90.00659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3430 0.0018 14 6 4.3215 -6.2773 0.0014 15 6 4.7971 -7.7625 -0.0480 16 1 5.8120 -7.9321 -0.4074 17 6 3.6323 -8.3791 -0.9077 18 6 2.4933 -7.7939 0.0019 19 1 1.4702 -8.0402 -0.2816 20 6 2.9812 -8.3036 1.3934 21 7 4.4635 -8.2972 1.3099 22 6 5.0459 -7.4566 2.3645 23 6 6.5273 -7.3106 2.1296 24 7 7.4532 -8.1490 2.5210 25 6 8.6542 -7.7053 2.1416 26 8 9.8384 -8.3271 2.3807 27 7 8.5035 -6.5719 1.5009 28 7 7.1258 -6.3001 1.4770 29 1 6.6923 -5.5331 1.0715 30 1 -0.4851 0.8400 -0.0004 31 1 3.1246 -3.7312 0.8906 32 1 3.1246 -3.7312 -0.8895 33 1 4.6761 -5.7370 -0.8764 34 1 4.6791 -5.7955 0.9114 35 1 3.6470 -9.4690 -0.9042 36 1 3.6033 -7.9752 -1.9196 37 1 2.6448 -7.6308 2.1823 38 1 2.6162 -9.3143 1.5757 39 1 4.5765 -6.4731 2.3460 40 1 4.8762 -7.9221 3.3354 41 1 10.1035 -8.9479 1.6883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481665072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:14 Heat of formation + Delta-G solvation = 76.959569 kcal Electronic energy + Delta-G solvation = -27199.358622 eV Core-core repulsion = 23244.998581 eV Total energy + Delta-G solvation = -3954.360041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.75991 -41.42253 -38.43471 -37.80642 -34.70697 -32.71993 -32.57257 -32.51895 -30.60257 -30.13316 -28.85639 -26.57672 -25.61743 -25.09561 -22.95952 -21.91630 -21.73586 -20.60499 -19.12271 -18.90824 -18.05403 -17.87460 -17.14904 -16.96955 -16.39491 -16.05327 -15.41797 -14.91071 -14.88289 -14.77887 -14.37928 -14.29609 -13.70195 -13.59437 -13.22508 -12.83229 -12.77589 -12.67173 -12.48503 -12.26481 -12.10703 -11.99230 -11.88088 -11.59454 -11.53266 -11.14260 -11.11781 -10.84047 -10.53948 -10.30615 -10.03333 -9.90905 -9.65728 -9.16518 -9.04321 -8.61398 -8.35692 -6.61857 -6.31078 -4.02951 0.99578 1.92255 2.21076 2.60249 2.83077 2.98172 3.15066 3.16761 3.24066 3.33656 3.42937 3.80640 3.90989 4.07017 4.11272 4.17980 4.38344 4.51466 4.70207 4.77041 4.89208 4.94677 5.04293 5.07044 5.14094 5.32114 5.38917 5.44008 5.48097 5.48570 5.54624 5.57949 5.68517 5.70668 5.94192 6.03031 6.13571 6.30610 6.49486 7.02379 7.42852 7.50313 7.56873 8.25435 8.33641 9.14461 10.76328 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012369 B = 0.003060 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.270183 B = 9148.343134 C =10965.921434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.149 4.149 11 C 0.552 3.448 12 O -0.508 6.508 13 N -0.628 5.628 14 C 0.060 3.940 15 C 0.044 3.956 16 H 0.130 0.870 17 C -0.131 4.131 18 C 0.115 3.885 19 H 0.133 0.867 20 C 0.027 3.973 21 N -0.499 5.499 22 C 0.113 3.887 23 C 0.311 3.689 24 N -0.527 5.527 25 C 0.402 3.598 26 O -0.440 6.440 27 N -0.306 5.306 28 N -0.467 5.467 29 H 0.445 0.555 30 H 0.269 0.731 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.639 -19.375 0.633 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.299 4.299 11 C 0.341 3.659 12 O -0.381 6.381 13 N -0.367 5.367 14 C -0.065 4.065 15 C -0.064 4.064 16 H 0.147 0.853 17 C -0.169 4.169 18 C 0.011 3.989 19 H 0.151 0.849 20 C -0.101 4.101 21 N -0.225 5.225 22 C -0.017 4.017 23 C 0.032 3.968 24 N -0.264 5.264 25 C 0.082 3.918 26 O -0.240 6.240 27 N -0.149 5.149 28 N -0.190 5.190 29 H 0.293 0.707 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 12.558 -19.678 1.210 23.375 hybrid contribution 1.590 2.450 -0.662 2.995 sum 14.148 -17.228 0.548 22.299 Atomic orbital electron populations 1.70016 1.05959 1.27498 1.46647 1.24996 0.95038 0.99075 0.94405 0.86115 0.79543 0.81817 0.78015 1.19633 1.20472 1.20479 1.22869 0.94856 0.91538 1.59243 0.90935 1.85440 1.04568 0.96343 1.96704 1.23525 1.06730 0.95101 1.04554 1.20065 0.85691 0.85300 0.74889 1.90729 1.14692 1.84932 1.47769 1.49321 1.05593 1.05781 1.76033 1.23225 0.82288 0.98811 1.02135 1.24807 1.00095 0.91137 0.90362 0.85255 1.23994 0.92925 1.01626 0.98354 1.24001 1.00271 0.79981 0.94659 0.84913 1.23798 0.85943 1.02733 0.97610 1.65188 1.09172 1.47221 1.00871 1.21030 0.83236 0.98793 0.98637 1.23861 0.96529 0.84970 0.91455 1.70300 0.98151 1.30203 1.27783 1.21186 0.86200 0.89717 0.94650 1.84923 1.30173 1.60108 1.48766 1.78266 0.92492 1.19166 1.24948 1.47977 1.04315 1.22105 1.44607 0.70719 0.92120 0.89648 0.89348 0.90304 0.91690 0.88376 0.89347 0.91020 0.88242 0.90824 0.86107 0.73425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.15 -2.81 5.44 36.01 0.20 -2.61 16 11 C 0.55 9.54 7.91 -10.99 -0.09 9.45 16 12 O -0.51 -10.82 16.21 5.55 0.09 -10.73 16 13 N -0.63 -7.52 2.95 -156.80 -0.46 -7.98 16 14 C 0.06 0.52 5.04 -1.68 -0.01 0.51 16 15 C 0.04 0.31 4.29 -62.16 -0.27 0.05 16 16 H 0.13 0.87 7.95 -51.93 -0.41 0.46 16 17 C -0.13 -0.93 6.81 -22.15 -0.15 -1.08 16 18 C 0.11 1.08 5.23 -62.57 -0.33 0.75 16 19 H 0.13 1.33 8.06 -51.93 -0.42 0.92 16 20 C 0.03 0.22 6.27 -1.35 -0.01 0.21 16 21 N -0.50 -3.81 5.39 -217.85 -1.17 -4.99 16 22 C 0.11 0.86 4.87 -4.98 -0.02 0.84 16 23 C 0.31 2.84 6.43 -155.71 -1.00 1.84 16 24 N -0.53 -5.96 11.21 -12.10 -0.14 -6.09 16 25 C 0.40 4.47 9.46 -91.24 -0.86 3.60 16 26 O -0.44 -3.97 13.66 -19.31 -0.26 -4.24 16 27 N -0.31 -3.39 12.81 29.18 0.37 -3.02 16 28 N -0.47 -4.05 7.02 32.62 0.23 -3.82 16 29 H 0.45 2.93 7.51 -182.35 -1.37 1.56 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 32 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.51 4.05 -51.93 -0.21 0.30 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.54 5.82 -51.93 -0.30 0.24 16 40 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.41 1.41 9.06 45.56 0.41 1.82 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -36.85 353.78 -10.05 -46.90 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.20 Total: 0.20 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.34 Total: 1.04 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.43 Total: -50.68 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.17 Total: -14.96 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.85 -10.05 -46.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481665072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.859 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds