Wall clock time and date at job start Tue Mar 31 2020 22:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99785 * 2 1 4 4 H 1.48496 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47026 * 299.99685 * 3 2 1 6 6 H 1.48503 * 109.47055 * 59.99606 * 3 2 1 7 7 C 1.38799 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99718 * 180.02562 * 7 2 1 9 9 S 1.76188 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99890 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47256 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.47860 * 126.92931 * 359.97356 * 13 11 10 15 15 C 1.56026 * 105.20319 * 181.92223 * 14 13 11 16 16 H 1.08998 * 116.25717 * 158.89926 * 15 14 13 17 17 C 1.57351 * 99.48093 * 32.81152 * 15 14 13 18 18 C 1.49283 * 126.92526 * 180.02562 * 13 11 10 19 19 H 1.08991 * 116.12695 * 16.82011 * 18 13 11 20 20 C 1.56009 * 104.12711 * 246.85071 * 18 13 11 21 21 N 1.48463 * 105.11121 * 288.85671 * 20 18 13 22 22 C 1.46894 * 110.97617 * 122.47472 * 21 20 18 23 23 C 1.50699 * 109.47096 * 188.21279 * 22 21 20 24 24 N 1.30894 * 125.91679 * 275.02622 * 23 22 21 25 25 C 1.33542 * 109.78106 * 179.97438 * 24 23 22 26 26 O 1.35864 * 125.58246 * 180.02562 * 25 24 23 27 27 N 1.31073 * 108.82509 * 0.02562 * 25 24 23 28 28 N 1.34359 * 125.90812 * 94.71803 * 23 22 21 29 29 H 0.96990 * 126.77754 * 0.02562 * 28 23 22 30 30 H 0.97001 * 120.00675 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46790 * 60.00188 * 10 9 7 32 32 H 1.09000 * 109.47266 * 299.99728 * 10 9 7 33 33 H 1.09003 * 110.31626 * 300.88476 * 14 13 11 34 34 H 1.09000 * 110.31524 * 62.96110 * 14 13 11 35 35 H 1.08994 * 112.34136 * 191.74891 * 17 15 14 36 36 H 1.08997 * 112.43758 * 64.36796 * 17 15 14 37 37 H 1.09005 * 110.32393 * 47.69787 * 20 18 13 38 38 H 1.09001 * 110.32509 * 169.89780 * 20 18 13 39 39 H 1.08999 * 109.47512 * 308.21228 * 22 21 20 40 40 H 1.08999 * 109.47260 * 68.21655 * 22 21 20 41 41 H 0.96699 * 114.00158 * 90.00659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3430 0.0018 14 6 4.3215 -6.2773 0.0014 15 6 4.7971 -7.7625 -0.0480 16 1 5.8120 -7.9321 -0.4074 17 6 3.6323 -8.3791 -0.9077 18 6 2.4933 -7.7939 0.0019 19 1 1.4702 -8.0402 -0.2816 20 6 2.9812 -8.3036 1.3934 21 7 4.4635 -8.2972 1.3099 22 6 5.0459 -7.4566 2.3645 23 6 6.5273 -7.3106 2.1296 24 7 7.4532 -8.1490 2.5210 25 6 8.6542 -7.7053 2.1416 26 8 9.8384 -8.3271 2.3807 27 7 8.5035 -6.5719 1.5009 28 7 7.1258 -6.3001 1.4770 29 1 6.6923 -5.5331 1.0715 30 1 -0.4851 0.8400 -0.0004 31 1 3.1246 -3.7312 0.8906 32 1 3.1246 -3.7312 -0.8895 33 1 4.6761 -5.7370 -0.8764 34 1 4.6791 -5.7955 0.9114 35 1 3.6470 -9.4690 -0.9042 36 1 3.6033 -7.9752 -1.9196 37 1 2.6448 -7.6308 2.1823 38 1 2.6162 -9.3143 1.5757 39 1 4.5765 -6.4731 2.3460 40 1 4.8762 -7.9221 3.3354 41 1 10.1035 -8.9479 1.6883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481665072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:13 Heat of formation + Delta-G solvation = 43.467965 kcal Electronic energy + Delta-G solvation = -27200.810927 eV Core-core repulsion = 23244.998581 eV Total energy + Delta-G solvation = -3955.812346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.49043 -42.22295 -39.70174 -38.49006 -35.56840 -34.61357 -33.47742 -33.46031 -31.49421 -30.86905 -30.09418 -27.70506 -27.24143 -25.94310 -23.68123 -22.66118 -22.59526 -21.38601 -20.20599 -19.71199 -19.46960 -18.71617 -18.28174 -17.85043 -17.21322 -16.97280 -16.90771 -16.35486 -16.18481 -15.86614 -15.50445 -15.09444 -14.85581 -14.63369 -14.27066 -14.07008 -13.66390 -13.58041 -13.40359 -13.19030 -13.15554 -12.94832 -12.85727 -12.80911 -12.64712 -12.49726 -12.27032 -12.20432 -11.73719 -11.28354 -11.18750 -11.06983 -11.04671 -10.77043 -10.30855 -9.91611 -9.40890 -8.70458 -8.37831 -6.15991 0.28125 1.18623 1.26963 1.39028 1.41737 1.49899 1.50744 1.53463 1.93537 2.23844 2.29328 2.70442 2.96844 3.09849 3.21202 3.28252 3.41556 3.48773 3.69780 3.74151 3.86600 4.05329 4.15126 4.24416 4.27323 4.38719 4.44811 4.52548 4.65621 4.77181 4.83661 4.86842 4.91701 4.95925 4.98705 5.18510 5.39100 5.48789 5.65975 5.88372 6.16758 6.30403 6.52272 6.83692 7.03952 7.04878 8.71481 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012369 B = 0.003060 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.270183 B = 9148.343134 C =10965.921434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.123 4.123 11 C 0.552 3.448 12 O -0.560 6.560 13 N -0.617 5.617 14 C 0.051 3.949 15 C 0.056 3.944 16 H 0.143 0.857 17 C -0.118 4.118 18 C 0.102 3.898 19 H 0.123 0.877 20 C 0.035 3.965 21 N -0.498 5.498 22 C 0.115 3.885 23 C 0.319 3.681 24 N -0.551 5.551 25 C 0.396 3.604 26 O -0.449 6.449 27 N -0.327 5.327 28 N -0.457 5.457 29 H 0.454 0.546 30 H 0.271 0.729 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.183 -20.133 0.504 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.080 5.920 10 C -0.274 4.274 11 C 0.341 3.659 12 O -0.438 6.438 13 N -0.353 5.353 14 C -0.073 4.073 15 C -0.052 4.052 16 H 0.160 0.840 17 C -0.156 4.156 18 C -0.001 4.001 19 H 0.141 0.859 20 C -0.093 4.093 21 N -0.223 5.223 22 C -0.015 4.015 23 C 0.040 3.960 24 N -0.289 5.289 25 C 0.077 3.923 26 O -0.252 6.252 27 N -0.170 5.170 28 N -0.182 5.182 29 H 0.303 0.697 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.145 0.855 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 15.164 -20.487 1.063 25.511 hybrid contribution 0.881 2.515 -0.617 2.736 sum 16.045 -17.972 0.447 24.096 Atomic orbital electron populations 1.70177 1.07938 1.28582 1.47986 1.26095 0.95930 1.03242 0.93761 0.84939 0.78643 0.76507 0.78077 1.18023 1.19982 1.20001 1.23199 0.95274 0.91925 1.58819 0.89941 1.85616 1.10265 0.99138 1.97012 1.23329 1.03563 0.94317 1.06193 1.19695 0.85443 0.85681 0.75125 1.90710 1.16818 1.85553 1.50692 1.49184 1.06781 1.05865 1.73515 1.23541 0.79852 1.00519 1.03359 1.24842 1.00610 0.89690 0.90107 0.83956 1.23966 0.91238 1.02599 0.97783 1.24261 1.00901 0.78193 0.96740 0.85948 1.23756 0.86046 1.03403 0.96056 1.65242 1.08744 1.47186 1.01084 1.21082 0.82300 0.99131 0.98956 1.24007 0.96709 0.84575 0.90755 1.70300 0.98611 1.31287 1.28745 1.21366 0.86635 0.89843 0.94459 1.84873 1.29537 1.60696 1.50133 1.78216 0.93653 1.19429 1.25740 1.47891 1.03654 1.22287 1.44347 0.69655 0.91965 0.87697 0.87691 0.89062 0.90548 0.86517 0.89242 0.92066 0.86395 0.90353 0.85510 0.70921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.85 13.22 21.65 0.29 -54.56 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 42.60 29.55 68.60 2.03 44.63 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.08 9.50 67.95 0.65 -29.43 16 8 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 9 S -0.15 -7.90 20.57 -56.49 -1.16 -9.06 16 10 C -0.12 -4.57 5.44 71.24 0.39 -4.18 16 11 C 0.55 18.95 7.91 87.66 0.69 19.64 16 12 O -0.56 -24.55 16.21 -3.04 -0.05 -24.59 16 13 N -0.62 -13.79 2.95 -768.40 -2.26 -16.06 16 14 C 0.05 0.73 5.04 87.17 0.44 1.17 16 15 C 0.06 0.61 4.29 46.95 0.20 0.81 16 16 H 0.14 1.36 7.95 -2.39 -0.02 1.34 16 17 C -0.12 -1.33 6.81 33.56 0.23 -1.10 16 18 C 0.10 1.74 5.23 46.92 0.25 1.99 16 19 H 0.12 2.40 8.06 -2.39 -0.02 2.38 16 20 C 0.04 0.48 6.27 87.04 0.55 1.03 16 21 N -0.50 -6.14 5.39 -843.14 -4.54 -10.68 16 22 C 0.12 1.47 4.87 85.56 0.42 1.88 16 23 C 0.32 5.07 6.43 138.23 0.89 5.96 16 24 N -0.55 -11.38 11.21 -304.30 -3.41 -14.79 16 25 C 0.40 8.14 9.46 180.57 1.71 9.85 16 26 O -0.45 -7.43 13.66 -92.02 -1.26 -8.69 16 27 N -0.33 -6.66 12.81 -174.94 -2.24 -8.90 16 28 N -0.46 -6.86 7.02 -50.71 -0.36 -7.22 16 29 H 0.45 4.75 7.51 -213.11 -1.60 3.15 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.10 3.53 8.14 -2.40 -0.02 3.51 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 0.96 4.05 -2.39 -0.01 0.95 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.99 7.56 -2.38 -0.02 0.98 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.08 0.94 5.82 -2.39 -0.01 0.93 16 40 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.43 2.24 9.06 -74.06 -0.67 1.57 16 Total: -1.00 -82.04 353.78 -7.26 -89.30 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -1.16 Total: 11.73 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.87 Total: 8.90 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -12.53 Total: -112.21 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.31 Total: -33.28 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -82.04 -7.26 -89.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481665072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.769 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds