Wall clock time and date at job start Tue Mar 31 2020 22:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86808 * 119.99595 * 2 1 4 4 H 1.48496 * 109.47501 * 270.00342 * 3 2 1 5 5 H 1.48502 * 109.46888 * 30.00717 * 3 2 1 6 6 H 1.48501 * 109.46867 * 150.00334 * 3 2 1 7 7 C 1.38944 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00622 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99757 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99711 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47015 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00026 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47215 * 185.28600 * 14 13 12 16 16 H 1.09004 * 109.87307 * 303.24729 * 15 14 13 17 17 C 1.54319 * 109.88322 * 64.26293 * 15 14 13 18 18 C 1.55156 * 102.93968 * 141.61077 * 17 15 14 19 19 C 1.54909 * 101.58476 * 324.49808 * 18 17 15 20 20 N 1.47027 * 109.88060 * 182.07328 * 15 14 13 21 21 C 1.34777 * 125.64805 * 61.59561 * 20 15 14 22 22 O 1.21630 * 119.99929 * 5.31601 * 21 20 15 23 23 C 1.47164 * 120.00017 * 185.31523 * 21 20 15 24 24 C 1.38246 * 128.48055 * 179.97438 * 23 21 20 25 25 N 1.31234 * 111.89171 * 179.97438 * 24 23 21 26 26 N 1.27331 * 120.04254 * 0.02562 * 25 24 23 27 27 S 1.56642 * 109.73566 * 359.69574 * 26 25 24 28 28 H 0.96998 * 120.00250 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99628 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46965 * 60.00125 * 12 10 9 31 31 H 1.09004 * 109.47434 * 300.00328 * 12 10 9 32 32 H 1.00894 * 111.00053 * 303.95503 * 13 12 10 33 33 H 1.08998 * 109.46884 * 65.27981 * 14 13 12 34 34 H 1.09003 * 109.46580 * 305.28179 * 14 13 12 35 35 H 1.09003 * 110.72104 * 259.97266 * 17 15 14 36 36 H 1.09001 * 110.72089 * 23.25190 * 17 15 14 37 37 H 1.09006 * 111.00445 * 82.57182 * 18 17 15 38 38 H 1.09001 * 111.00712 * 206.38709 * 18 17 15 39 39 H 1.08997 * 110.36665 * 155.84959 * 19 18 17 40 40 H 1.09001 * 110.36381 * 278.17034 * 19 18 17 41 41 H 1.08006 * 124.04940 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0467 -1.4000 5 1 1.4454 2.6527 0.7002 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9975 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0011 12 6 1.2441 -4.8629 -0.0022 13 7 2.1988 -5.9794 -0.0027 14 6 1.4986 -7.2708 -0.0039 15 6 2.5181 -8.4039 0.1285 16 1 3.2513 -8.3384 -0.6754 17 6 3.2286 -8.3136 1.4955 18 6 3.3710 -9.8014 1.9120 19 6 2.0597 -10.4078 1.3530 20 7 1.8312 -9.7029 0.0785 21 6 1.1112 -10.1713 -0.9601 22 8 1.0678 -9.5447 -2.0017 23 6 0.3776 -11.4407 -0.8339 24 6 -0.4077 -12.0778 -1.7765 25 7 -0.9109 -13.1994 -1.3170 26 7 -0.6507 -13.5750 -0.1285 27 16 0.2909 -12.5309 0.5621 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0016 30 1 0.6178 -4.9205 -0.8925 31 1 0.6170 -4.9209 0.8875 32 1 2.8336 -5.9119 -0.7840 33 1 0.9479 -7.3847 -0.9376 34 1 0.8033 -7.3078 0.8348 35 1 4.2081 -7.8469 1.3909 36 1 2.6154 -7.7691 2.2136 37 1 4.2431 -10.2568 1.4428 38 1 3.4168 -9.9008 2.9965 39 1 2.1802 -11.4770 1.1789 40 1 1.2340 -10.2253 2.0408 41 1 -0.5852 -11.6984 -2.7721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482054612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:19 Heat of formation + Delta-G solvation = 15.759080 kcal Electronic energy + Delta-G solvation = -26168.795670 eV Core-core repulsion = 22211.781777 eV Total energy + Delta-G solvation = -3957.013893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27579 -40.54989 -38.33271 -37.84473 -35.36639 -33.85083 -32.85626 -31.85225 -31.25590 -30.39699 -27.97775 -26.94073 -25.03580 -24.22828 -23.06925 -22.54470 -21.04213 -20.11715 -19.54448 -19.03252 -17.89420 -17.51058 -17.13527 -16.48669 -16.14877 -15.66173 -15.49893 -15.20637 -14.71167 -14.61216 -14.34991 -13.99190 -13.82527 -13.69339 -13.44857 -13.21931 -13.10424 -12.57571 -12.41316 -12.29166 -11.82475 -11.77883 -11.63950 -11.50699 -11.12040 -11.02143 -10.97278 -10.63596 -10.53750 -10.44263 -10.39766 -10.27283 -10.22300 -9.51298 -9.18703 -8.46909 -8.09029 -7.96487 -6.41952 -3.82918 -0.73952 0.31660 1.01478 1.52493 2.27952 2.52344 3.17660 3.26315 3.32122 3.52325 3.85982 3.90543 4.04706 4.13111 4.23627 4.37800 4.43089 4.54436 4.77189 4.87241 5.05435 5.09859 5.13336 5.22473 5.29100 5.36969 5.50289 5.59496 5.68632 5.75579 5.84148 5.96747 6.03993 6.07270 6.25557 6.87958 7.13687 7.18735 7.51932 7.54887 7.61268 8.05803 8.60676 9.17389 9.53911 10.05051 10.75772 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.002001 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.943125 B =13987.481294 C =14635.126719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.663 5.663 14 C 0.048 3.952 15 C 0.144 3.856 16 H 0.084 0.916 17 C -0.112 4.112 18 C -0.132 4.132 19 C 0.085 3.915 20 N -0.606 5.606 21 C 0.614 3.386 22 O -0.509 6.509 23 C -0.283 4.283 24 C 0.074 3.926 25 N -0.250 5.250 26 N -0.269 5.269 27 S 0.427 5.573 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.351 0.649 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -25.862 4.157 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.295 5.295 14 C -0.083 4.083 15 C 0.041 3.959 16 H 0.102 0.898 17 C -0.150 4.150 18 C -0.170 4.170 19 C -0.039 4.039 20 N -0.340 5.340 21 C 0.399 3.601 22 O -0.385 6.385 23 C -0.424 4.424 24 C -0.093 4.093 25 N -0.115 5.115 26 N -0.250 5.250 27 S 0.563 5.437 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.856 -26.869 5.440 27.427 hybrid contribution -0.640 1.728 -2.080 2.779 sum 0.215 -25.140 3.360 25.365 Atomic orbital electron populations 1.69613 1.05944 1.28167 1.50592 1.25271 0.95642 0.99751 0.97337 0.85852 0.79231 0.80789 0.78380 1.20422 1.20935 1.19395 1.19701 0.93367 0.82210 1.47576 0.87895 1.41867 1.09220 1.04616 1.64334 1.19771 0.88363 0.84670 0.84478 1.90517 1.13714 1.87066 1.55451 1.21653 0.94305 0.90822 1.01262 1.59999 1.18785 0.99454 1.51297 1.22256 0.95671 0.89082 1.01273 1.21605 0.93797 0.80709 0.99757 0.89810 1.22615 1.02299 0.95242 0.94843 1.22824 0.95867 0.96456 1.01850 1.22653 0.99709 0.96176 0.85409 1.48375 1.50989 1.19566 1.15101 1.16069 0.78529 0.82436 0.83072 1.90898 1.62462 1.57991 1.27138 1.28014 1.10059 1.04331 0.99968 1.24515 0.93207 0.89216 1.02369 1.70790 1.21316 1.14727 1.04636 1.78769 1.15271 1.24810 1.06115 1.82810 1.34705 1.06849 1.19308 0.91868 0.77457 0.93797 0.89644 0.83009 0.94078 0.90943 0.88886 0.89457 0.90263 0.89083 0.90815 0.89976 0.76695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.26 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.32 7.82 -10.98 -0.09 10.24 16 11 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 12 C 0.05 0.92 6.16 -4.98 -0.03 0.88 16 13 N -0.66 -10.23 5.82 -115.05 -0.67 -10.90 16 14 C 0.05 0.59 5.04 -3.82 -0.02 0.57 16 15 C 0.14 1.46 3.09 -66.95 -0.21 1.25 16 16 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.11 -0.91 6.22 -24.90 -0.15 -1.07 16 18 C -0.13 -0.68 7.08 -24.58 -0.17 -0.85 16 19 C 0.08 0.47 5.51 -2.53 -0.01 0.45 16 20 N -0.61 -5.39 3.07 -164.37 -0.50 -5.89 16 21 C 0.61 6.52 7.57 -12.64 -0.10 6.42 16 22 O -0.51 -7.18 16.18 5.25 0.08 -7.10 16 23 C -0.28 -2.44 6.66 -35.96 -0.24 -2.68 16 24 C 0.07 0.64 11.55 -17.80 -0.21 0.44 16 25 N -0.25 -2.53 11.54 30.36 0.35 -2.18 16 26 N -0.27 -2.56 12.51 60.35 0.75 -1.80 16 27 S 0.43 2.74 19.72 -107.50 -2.12 0.62 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.35 5.73 8.49 -39.29 -0.33 5.40 16 33 H 0.04 0.58 6.96 -51.93 -0.36 0.22 16 34 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.77 7.81 -51.93 -0.41 0.37 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.30 5.63 -40.75 -0.23 0.07 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.22 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -33.85 361.09 -7.36 -41.21 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.96 Total: 10.58 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -1.47 Total: 7.68 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.60 Total: -58.93 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.12 Total: 0.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.85 -7.36 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482054612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.969 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds