Wall clock time and date at job start Tue Mar 31 2020 22:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86808 * 119.99595 * 2 1 4 4 H 1.48496 * 109.47501 * 270.00342 * 3 2 1 5 5 H 1.48502 * 109.46888 * 30.00717 * 3 2 1 6 6 H 1.48501 * 109.46867 * 150.00334 * 3 2 1 7 7 C 1.38944 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00622 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99757 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99711 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47015 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00026 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47215 * 185.28600 * 14 13 12 16 16 H 1.09004 * 109.87307 * 303.24729 * 15 14 13 17 17 C 1.54319 * 109.88322 * 64.26293 * 15 14 13 18 18 C 1.55156 * 102.93968 * 141.61077 * 17 15 14 19 19 C 1.54909 * 101.58476 * 324.49808 * 18 17 15 20 20 N 1.47027 * 109.88060 * 182.07328 * 15 14 13 21 21 C 1.34777 * 125.64805 * 61.59561 * 20 15 14 22 22 O 1.21630 * 119.99929 * 5.31601 * 21 20 15 23 23 C 1.47164 * 120.00017 * 185.31523 * 21 20 15 24 24 C 1.38246 * 128.48055 * 179.97438 * 23 21 20 25 25 N 1.31234 * 111.89171 * 179.97438 * 24 23 21 26 26 N 1.27331 * 120.04254 * 0.02562 * 25 24 23 27 27 S 1.56642 * 109.73566 * 359.69574 * 26 25 24 28 28 H 0.96998 * 120.00250 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99628 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46965 * 60.00125 * 12 10 9 31 31 H 1.09004 * 109.47434 * 300.00328 * 12 10 9 32 32 H 1.00894 * 111.00053 * 303.95503 * 13 12 10 33 33 H 1.08998 * 109.46884 * 65.27981 * 14 13 12 34 34 H 1.09003 * 109.46580 * 305.28179 * 14 13 12 35 35 H 1.09003 * 110.72104 * 259.97266 * 17 15 14 36 36 H 1.09001 * 110.72089 * 23.25190 * 17 15 14 37 37 H 1.09006 * 111.00445 * 82.57182 * 18 17 15 38 38 H 1.09001 * 111.00712 * 206.38709 * 18 17 15 39 39 H 1.08997 * 110.36665 * 155.84959 * 19 18 17 40 40 H 1.09001 * 110.36381 * 278.17034 * 19 18 17 41 41 H 1.08006 * 124.04940 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0467 -1.4000 5 1 1.4454 2.6527 0.7002 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9975 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0011 12 6 1.2441 -4.8629 -0.0022 13 7 2.1988 -5.9794 -0.0027 14 6 1.4986 -7.2708 -0.0039 15 6 2.5181 -8.4039 0.1285 16 1 3.2513 -8.3384 -0.6754 17 6 3.2286 -8.3136 1.4955 18 6 3.3710 -9.8014 1.9120 19 6 2.0597 -10.4078 1.3530 20 7 1.8312 -9.7029 0.0785 21 6 1.1112 -10.1713 -0.9601 22 8 1.0678 -9.5447 -2.0017 23 6 0.3776 -11.4407 -0.8339 24 6 -0.4077 -12.0778 -1.7765 25 7 -0.9109 -13.1994 -1.3170 26 7 -0.6507 -13.5750 -0.1285 27 16 0.2909 -12.5309 0.5621 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0016 30 1 0.6178 -4.9205 -0.8925 31 1 0.6170 -4.9209 0.8875 32 1 2.8336 -5.9119 -0.7840 33 1 0.9479 -7.3847 -0.9376 34 1 0.8033 -7.3078 0.8348 35 1 4.2081 -7.8469 1.3909 36 1 2.6154 -7.7691 2.2136 37 1 4.2431 -10.2568 1.4428 38 1 3.4168 -9.9008 2.9965 39 1 2.1802 -11.4770 1.1789 40 1 1.2340 -10.2253 2.0408 41 1 -0.5852 -11.6984 -2.7721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482054612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:19 Heat of formation + Delta-G solvation = -10.986172 kcal Electronic energy + Delta-G solvation = -26169.955431 eV Core-core repulsion = 22211.781777 eV Total energy + Delta-G solvation = -3958.173654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95652 -41.29647 -40.13672 -38.71973 -36.66351 -35.79597 -33.61114 -33.26365 -32.49241 -31.36579 -28.69565 -28.28881 -26.43234 -25.29184 -24.16877 -23.19156 -21.75685 -21.17603 -20.74045 -20.07765 -19.79758 -18.24554 -17.99885 -17.65075 -17.18068 -16.84888 -16.57049 -16.43155 -16.04840 -15.74316 -15.49686 -15.23738 -15.07857 -14.90534 -14.33876 -14.10085 -13.96723 -13.73742 -13.50714 -13.31446 -13.21852 -13.02079 -12.85404 -12.66998 -12.41608 -12.33938 -12.11548 -11.86927 -11.61800 -11.50575 -11.44017 -11.21331 -11.08247 -10.87824 -10.38215 -10.01992 -9.90669 -9.40348 -8.46617 -5.95565 -1.39599 -0.28870 0.40237 0.83536 1.38450 1.42258 1.53824 1.56038 1.76567 2.04381 2.29345 2.83822 2.95381 3.20430 3.26897 3.48612 3.59558 3.62291 3.77458 3.88790 4.12013 4.25859 4.32481 4.37338 4.45630 4.51870 4.53046 4.54857 4.69348 4.76449 4.96823 5.00912 5.16760 5.32242 5.41094 5.42765 5.80437 6.04457 6.18873 6.28046 6.54909 6.59256 6.75709 7.12120 7.55504 8.10172 8.70816 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.002001 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.943125 B =13987.481294 C =14635.126719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.081 0.919 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.066 3.934 13 N -0.665 5.665 14 C 0.056 3.944 15 C 0.145 3.855 16 H 0.068 0.932 17 C -0.110 4.110 18 C -0.120 4.120 19 C 0.075 3.925 20 N -0.602 5.602 21 C 0.612 3.388 22 O -0.555 6.555 23 C -0.304 4.304 24 C 0.074 3.926 25 N -0.277 5.277 26 N -0.303 5.303 27 S 0.525 5.475 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.343 0.657 33 H 0.024 0.976 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -26.924 5.975 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.099 0.901 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.506 6.506 12 C -0.067 4.067 13 N -0.297 5.297 14 C -0.074 4.074 15 C 0.041 3.959 16 H 0.086 0.914 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.047 4.047 20 N -0.335 5.335 21 C 0.399 3.601 22 O -0.434 6.434 23 C -0.445 4.445 24 C -0.094 4.094 25 N -0.140 5.140 26 N -0.284 5.284 27 S 0.660 5.340 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.162 0.838 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.818 -27.980 7.293 28.926 hybrid contribution -0.589 2.010 -2.563 3.310 sum 0.229 -25.970 4.730 26.398 Atomic orbital electron populations 1.69676 1.06879 1.29308 1.50370 1.26069 0.96560 1.02513 0.96297 0.84911 0.77934 0.76787 0.78606 1.19745 1.19566 1.19587 1.19679 0.92752 0.83939 1.49846 0.90139 1.41942 1.09340 1.04765 1.65055 1.20757 0.88237 0.85994 0.82253 1.90487 1.15642 1.87904 1.56556 1.21517 0.94011 0.88256 1.02877 1.60020 1.18573 1.00152 1.50955 1.22251 0.96142 0.88253 1.00794 1.21508 0.93013 0.80669 1.00669 0.91376 1.22560 1.01345 0.97580 0.93351 1.22835 0.95759 0.93680 1.03497 1.23002 1.00846 0.96820 0.84066 1.48429 1.50013 1.19195 1.15899 1.16298 0.78389 0.82696 0.82741 1.90870 1.64139 1.59468 1.28936 1.27870 1.10546 1.04300 1.01784 1.24709 0.92877 0.88903 1.02932 1.70853 1.22512 1.15465 1.05154 1.78501 1.16771 1.26620 1.06467 1.82339 1.31593 1.03828 1.16210 0.91312 0.77038 0.92497 0.87440 0.83848 0.95823 0.89732 0.89765 0.89800 0.89690 0.86441 0.89074 0.87859 0.75899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 3 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.57 -29.51 5.29 -306.98 -1.62 -31.13 16 10 C 0.44 20.85 7.82 87.66 0.69 21.53 16 11 O -0.62 -33.87 15.78 -3.06 -0.05 -33.92 16 12 C 0.07 2.27 6.16 85.56 0.53 2.80 16 13 N -0.67 -20.42 5.82 -517.91 -3.02 -23.43 16 14 C 0.06 1.35 5.04 86.30 0.44 1.78 16 15 C 0.14 2.82 3.09 45.34 0.14 2.96 16 16 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 17 C -0.11 -1.60 6.22 31.78 0.20 -1.40 16 18 C -0.12 -0.83 7.08 31.99 0.23 -0.60 16 19 C 0.08 0.57 5.51 86.86 0.48 1.05 16 20 N -0.60 -9.77 3.07 -792.19 -2.43 -12.20 16 21 C 0.61 12.63 7.57 86.59 0.66 13.28 16 22 O -0.56 -16.05 16.18 -4.13 -0.07 -16.12 16 23 C -0.30 -4.87 6.66 24.62 0.16 -4.70 16 24 C 0.07 1.25 11.55 84.78 0.98 2.23 16 25 N -0.28 -5.42 11.54 -57.87 -0.67 -6.09 16 26 N -0.30 -5.28 12.51 37.02 0.46 -4.82 16 27 S 0.52 5.29 19.72 -56.49 -1.11 4.17 16 28 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.34 11.47 8.49 -89.70 -0.76 10.71 16 33 H 0.02 0.67 6.96 -2.39 -0.02 0.65 16 34 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.30 7.81 -2.39 -0.02 1.28 16 37 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.09 0.37 5.63 -9.50 -0.05 0.32 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -75.07 361.09 -0.85 -75.92 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.43 Total: 31.80 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 5.77 Total: 20.54 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -6.99 Total: -127.28 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.12 Total: -50.04 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.11 Total: 4.17 kcal Total: -75.07 -0.85 -75.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482054612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.934 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds