Wall clock time and date at job start Tue Mar 31 2020 22:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09004 * 112.74411 * 75.76407 * 15 14 13 17 17 C 1.53503 * 113.48010 * 206.61733 * 15 14 13 18 18 C 1.53512 * 83.57512 * 140.79315 * 17 15 14 19 19 N 1.47475 * 87.93278 * 333.97760 * 18 17 15 20 20 C 1.46900 * 111.00189 * 138.70438 * 19 18 17 21 21 C 1.50705 * 109.46913 * 94.03331 * 20 19 18 22 22 C 1.38225 * 119.59221 * 95.00241 * 21 20 19 23 23 C 1.38598 * 119.19072 * 179.97438 * 22 21 20 24 24 C 1.38879 * 118.39793 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.44494 * 179.97438 * 24 23 22 26 26 C 1.38431 * 119.11010 * 0.02562 * 24 23 22 27 27 N 1.31846 * 119.58548 * 274.72691 * 21 20 19 28 28 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 31 31 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 32 32 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 33 33 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 34 34 H 1.09003 * 114.17237 * 254.43784 * 17 15 14 35 35 H 1.08996 * 114.16986 * 27.14827 * 17 15 14 36 36 H 1.09007 * 113.47836 * 219.21249 * 18 17 15 37 37 H 1.08996 * 113.53558 * 88.75662 * 18 17 15 38 38 H 1.09003 * 109.47136 * 214.02957 * 20 19 18 39 39 H 1.08990 * 109.47095 * 334.02970 * 20 19 18 40 40 H 1.08001 * 120.41042 * 0.02562 * 22 21 20 41 41 H 1.07994 * 120.79984 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.63276 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 3.9838 -8.7852 0.9352 17 6 3.1615 -10.0526 -0.6767 18 6 4.5785 -9.9412 -1.2565 19 7 4.4511 -8.4761 -1.1456 20 6 5.6989 -7.8747 -0.6564 21 6 6.5391 -7.4377 -1.8287 22 6 6.4663 -6.1301 -2.2710 23 6 7.2431 -5.7371 -3.3494 24 6 8.0699 -6.6798 -3.9464 25 9 8.8442 -6.3417 -5.0006 26 6 8.0891 -7.9710 -3.4474 27 7 7.3385 -8.3060 -2.4163 28 1 -0.4849 0.8401 0.0004 29 1 3.1244 -3.7267 -0.9039 30 1 3.1244 -3.7361 0.8761 31 1 3.8007 -6.1835 -0.0260 32 1 1.7212 -7.8796 0.8553 33 1 1.7219 -7.8705 -0.9248 34 1 3.0350 -10.8643 0.0398 35 1 2.3689 -10.0073 -1.4235 36 1 4.6558 -10.2936 -2.2851 37 1 5.3481 -10.3604 -0.6085 38 1 5.4662 -7.0106 -0.0341 39 1 6.2496 -8.6084 -0.0681 40 1 5.8128 -5.4231 -1.7816 41 1 7.2070 -4.7219 -3.7161 42 1 8.7286 -8.7110 -3.9055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483629996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:09 Heat of formation + Delta-G solvation = -6.326573 kcal Electronic energy + Delta-G solvation = -26040.883851 eV Core-core repulsion = 22062.992290 eV Total energy + Delta-G solvation = -3977.891560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.31232 -41.09708 -40.09052 -38.83427 -34.32959 -33.23741 -32.85322 -32.43624 -30.18039 -29.45063 -27.54981 -25.48503 -25.37703 -24.27170 -23.24410 -22.23499 -20.46707 -19.98683 -18.03796 -17.88966 -17.61922 -17.02938 -16.47489 -16.41454 -16.05660 -16.00228 -15.19435 -15.01798 -14.81566 -14.57460 -14.32677 -14.21263 -13.90768 -13.74850 -13.48004 -13.34206 -13.12045 -12.76400 -12.60743 -12.44783 -11.94873 -11.81361 -11.65901 -11.34228 -11.08212 -11.02756 -10.91343 -10.74072 -10.29272 -10.01886 -9.81413 -9.46610 -9.31033 -9.16153 -9.08556 -8.83041 -8.23274 -6.50314 -6.22661 -3.92925 0.49820 0.72763 2.98044 3.11106 3.13306 3.20560 3.27430 3.31433 3.55189 3.62606 3.78103 3.94752 4.01980 4.19391 4.24691 4.37319 4.43145 4.47519 4.72445 4.82310 4.89807 4.89926 4.99951 5.12611 5.15915 5.19985 5.33244 5.38003 5.43437 5.51789 5.57447 5.59978 5.63986 5.77501 5.85958 5.89867 5.92539 6.11355 6.21230 6.60568 6.65109 7.42942 7.58654 7.72046 8.34237 8.63956 9.22799 10.84795 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.002958 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.139888 B = 9464.085415 C =12144.267656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.140 3.860 15 C 0.015 3.985 16 H 0.087 0.913 17 C -0.136 4.136 18 C 0.006 3.994 19 N -0.459 5.459 20 C 0.067 3.933 21 C 0.130 3.870 22 C -0.121 4.121 23 C -0.105 4.105 24 C 0.045 3.955 25 F -0.131 7.131 26 C 0.075 3.925 27 N -0.451 5.451 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.634 -20.653 -2.877 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.015 3.985 15 C -0.095 4.095 16 H 0.105 0.895 17 C -0.174 4.174 18 C -0.122 4.122 19 N -0.181 5.181 20 C -0.062 4.062 21 C -0.008 4.008 22 C -0.142 4.142 23 C -0.132 4.132 24 C 0.023 3.977 25 F -0.110 7.110 26 C -0.084 4.084 27 N -0.160 5.160 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.226 0.774 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.356 -21.294 -3.163 25.875 hybrid contribution 3.018 2.019 0.065 3.632 sum 17.374 -19.275 -3.098 26.134 Atomic orbital electron populations 1.70031 1.05943 1.27333 1.46917 1.24994 0.95020 0.99016 0.94562 0.86126 0.79560 0.81941 0.77920 1.19648 1.20560 1.20568 1.22904 0.94907 0.91688 1.58845 0.90929 1.85425 1.04891 0.96256 1.96682 1.23526 1.06581 0.95601 1.04693 1.20282 0.86557 0.86241 0.75255 1.90703 1.15336 1.85569 1.47568 1.45908 1.09614 1.05470 1.77777 1.21245 0.94498 0.80121 1.02613 1.23744 0.94822 0.95947 0.94973 0.89532 1.23195 0.97909 0.95816 1.00488 1.23785 0.96773 0.89014 1.02668 1.68972 1.07140 1.11440 1.30591 1.21605 0.90919 1.00999 0.92672 1.20974 0.93805 0.89748 0.96264 1.21955 0.98668 0.97251 0.96301 1.21746 0.94949 1.00613 0.95875 1.18841 0.94841 0.95559 0.88450 1.91530 1.72681 1.92847 1.53919 1.22827 0.98293 0.93517 0.93767 1.67478 1.04967 1.36136 1.07422 0.92236 0.89393 0.89398 0.77371 0.91132 0.90920 0.90044 0.88312 0.89578 0.90808 0.89233 0.91167 0.83493 0.83183 0.81679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.80 16 11 C 0.53 9.75 7.85 -10.99 -0.09 9.67 16 12 O -0.52 -11.68 15.86 5.56 0.09 -11.59 16 13 N -0.73 -9.53 5.46 -60.29 -0.33 -9.86 16 14 C 0.14 1.56 5.81 -4.04 -0.02 1.53 16 15 C 0.01 0.11 3.23 -71.45 -0.23 -0.12 16 16 H 0.09 0.56 7.91 -51.93 -0.41 0.14 16 17 C -0.14 -0.88 8.00 -26.21 -0.21 -1.09 16 18 C 0.01 0.04 7.71 -7.56 -0.06 -0.01 16 19 N -0.46 -3.90 5.88 -237.98 -1.40 -5.30 16 20 C 0.07 0.52 4.88 -4.97 -0.02 0.49 16 21 C 0.13 1.20 6.36 -82.59 -0.53 0.67 16 22 C -0.12 -1.08 9.72 -39.45 -0.38 -1.47 16 23 C -0.11 -0.94 10.16 -39.21 -0.40 -1.33 16 24 C 0.04 0.41 7.35 -39.27 -0.29 0.12 16 25 F -0.13 -1.27 17.28 2.25 0.04 -1.24 16 26 C 0.07 0.65 11.17 -17.47 -0.20 0.46 16 27 N -0.45 -4.37 10.27 -9.42 -0.10 -4.47 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.39 4.09 6.22 -40.82 -0.25 3.83 16 32 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.07 0.92 7.88 -51.92 -0.41 0.51 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.71 7.94 -51.93 -0.41 0.29 16 36 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.07 0.46 7.42 -51.93 -0.39 0.07 16 38 H 0.09 0.59 6.17 -51.93 -0.32 0.27 16 39 H 0.07 0.49 7.30 -51.93 -0.38 0.11 16 40 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -35.10 374.65 -10.06 -45.15 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.50 Total: 1.22 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.00 Total: -6.68 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -1.09 Total: -44.90 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.10 -10.06 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483629996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.827 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds