Wall clock time and date at job start Tue Mar 31 2020 22:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09004 * 112.74411 * 75.76407 * 15 14 13 17 17 C 1.53503 * 113.48010 * 206.61733 * 15 14 13 18 18 C 1.53512 * 83.57512 * 140.79315 * 17 15 14 19 19 N 1.47475 * 87.93278 * 333.97760 * 18 17 15 20 20 C 1.46900 * 111.00189 * 138.70438 * 19 18 17 21 21 C 1.50705 * 109.46913 * 94.03331 * 20 19 18 22 22 C 1.38225 * 119.59221 * 95.00241 * 21 20 19 23 23 C 1.38598 * 119.19072 * 179.97438 * 22 21 20 24 24 C 1.38879 * 118.39793 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.44494 * 179.97438 * 24 23 22 26 26 C 1.38431 * 119.11010 * 0.02562 * 24 23 22 27 27 N 1.31846 * 119.58548 * 274.72691 * 21 20 19 28 28 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 31 31 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 32 32 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 33 33 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 34 34 H 1.09003 * 114.17237 * 254.43784 * 17 15 14 35 35 H 1.08996 * 114.16986 * 27.14827 * 17 15 14 36 36 H 1.09007 * 113.47836 * 219.21249 * 18 17 15 37 37 H 1.08996 * 113.53558 * 88.75662 * 18 17 15 38 38 H 1.09003 * 109.47136 * 214.02957 * 20 19 18 39 39 H 1.08990 * 109.47095 * 334.02970 * 20 19 18 40 40 H 1.08001 * 120.41042 * 0.02562 * 22 21 20 41 41 H 1.07994 * 120.79984 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.63276 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 3.9838 -8.7852 0.9352 17 6 3.1615 -10.0526 -0.6767 18 6 4.5785 -9.9412 -1.2565 19 7 4.4511 -8.4761 -1.1456 20 6 5.6989 -7.8747 -0.6564 21 6 6.5391 -7.4377 -1.8287 22 6 6.4663 -6.1301 -2.2710 23 6 7.2431 -5.7371 -3.3494 24 6 8.0699 -6.6798 -3.9464 25 9 8.8442 -6.3417 -5.0006 26 6 8.0891 -7.9710 -3.4474 27 7 7.3385 -8.3060 -2.4163 28 1 -0.4849 0.8401 0.0004 29 1 3.1244 -3.7267 -0.9039 30 1 3.1244 -3.7361 0.8761 31 1 3.8007 -6.1835 -0.0260 32 1 1.7212 -7.8796 0.8553 33 1 1.7219 -7.8705 -0.9248 34 1 3.0350 -10.8643 0.0398 35 1 2.3689 -10.0073 -1.4235 36 1 4.6558 -10.2936 -2.2851 37 1 5.3481 -10.3604 -0.6085 38 1 5.4662 -7.0106 -0.0341 39 1 6.2496 -8.6084 -0.0681 40 1 5.8128 -5.4231 -1.7816 41 1 7.2070 -4.7219 -3.7161 42 1 8.7286 -8.7110 -3.9055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483629996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:08 Heat of formation + Delta-G solvation = -32.186380 kcal Electronic energy + Delta-G solvation = -26042.005216 eV Core-core repulsion = 22062.992290 eV Total energy + Delta-G solvation = -3979.012926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02787 -41.76185 -40.83177 -40.14914 -35.56876 -34.56724 -33.88247 -33.51417 -31.50744 -30.16626 -28.61615 -27.60160 -25.98815 -24.93394 -24.02589 -22.88177 -21.77706 -20.69297 -19.80404 -18.71352 -18.31430 -17.85923 -17.66413 -17.32211 -17.00529 -16.86773 -16.78446 -16.39316 -15.87112 -15.84332 -15.24579 -15.00746 -14.89654 -14.62453 -14.56281 -14.38048 -14.26250 -13.98491 -13.57324 -13.35853 -13.14222 -12.96314 -12.88385 -12.60277 -12.49729 -12.35294 -11.91949 -11.73538 -11.56114 -11.14675 -10.96820 -10.89024 -10.68596 -10.24356 -10.08126 -9.97134 -9.79852 -8.64438 -8.33411 -6.10832 -0.17261 0.06127 1.28740 1.42087 1.48774 1.59154 1.66361 2.24863 2.29731 2.46984 2.93125 3.01020 3.06614 3.27216 3.36366 3.44390 3.64256 3.76456 3.80616 3.84414 3.96489 4.13774 4.21388 4.28385 4.30999 4.35300 4.44458 4.51686 4.56928 4.69443 4.72536 4.85797 4.87169 4.92354 4.96043 5.04320 5.23144 5.27429 5.43715 5.51354 5.56465 6.03212 6.21520 6.52257 6.76515 7.08276 7.28222 8.76005 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.002958 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.139888 B = 9464.085415 C =12144.267656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.706 5.706 14 C 0.138 3.862 15 C 0.024 3.976 16 H 0.110 0.890 17 C -0.128 4.128 18 C 0.010 3.990 19 N -0.480 5.480 20 C 0.067 3.933 21 C 0.123 3.877 22 C -0.131 4.131 23 C -0.111 4.111 24 C 0.032 3.968 25 F -0.137 7.137 26 C 0.073 3.927 27 N -0.464 5.464 28 H 0.270 0.730 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.408 0.592 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.106 -21.293 -2.290 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.014 3.986 15 C -0.085 4.085 16 H 0.128 0.872 17 C -0.166 4.166 18 C -0.118 4.118 19 N -0.203 5.203 20 C -0.061 4.061 21 C -0.015 4.015 22 C -0.151 4.151 23 C -0.138 4.138 24 C 0.011 3.989 25 F -0.116 7.116 26 C -0.086 4.086 27 N -0.173 5.173 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.245 0.755 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 16.887 -21.976 -2.577 27.834 hybrid contribution 2.301 2.076 -0.148 3.103 sum 19.187 -19.900 -2.726 27.778 Atomic orbital electron populations 1.70196 1.07983 1.28477 1.48169 1.26117 0.95937 1.03287 0.93832 0.84921 0.78693 0.76438 0.77998 1.17901 1.20085 1.20018 1.23238 0.95367 0.91960 1.58585 0.89804 1.85622 1.10617 0.99230 1.97021 1.23370 1.03544 0.94430 1.06714 1.20073 0.86262 0.86704 0.75223 1.90692 1.17432 1.86095 1.50315 1.45666 1.09850 1.05211 1.75260 1.21404 0.96070 0.79390 1.01773 1.23735 0.93529 0.95202 0.96038 0.87199 1.23172 0.97297 0.95677 1.00471 1.23772 0.97443 0.88157 1.02429 1.68932 1.07719 1.12517 1.31121 1.21672 0.90509 1.01702 0.92249 1.21280 0.93761 0.89856 0.96587 1.22136 0.98963 0.97560 0.96470 1.21961 0.94741 1.01182 0.95883 1.18972 0.95266 0.96050 0.88657 1.91513 1.72897 1.92925 1.54223 1.23168 0.98154 0.93816 0.93468 1.67530 1.05468 1.36451 1.07874 0.92059 0.87322 0.87128 0.75464 0.91216 0.92648 0.87866 0.89331 0.90671 0.89395 0.88149 0.90075 0.82451 0.82155 0.79736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.73 13.22 21.65 0.29 -55.45 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.57 9.50 67.96 0.65 -29.93 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 10 C -0.13 -4.96 6.16 71.23 0.44 -4.52 16 11 C 0.53 19.14 7.85 87.66 0.69 19.83 16 12 O -0.57 -26.02 15.86 -3.02 -0.05 -26.07 16 13 N -0.71 -17.01 5.46 -463.06 -2.53 -19.54 16 14 C 0.14 2.85 5.81 86.38 0.50 3.36 16 15 C 0.02 0.31 3.23 42.18 0.14 0.45 16 16 H 0.11 0.96 7.91 -2.39 -0.02 0.94 16 17 C -0.13 -1.35 8.00 30.94 0.25 -1.10 16 18 C 0.01 0.12 7.71 83.57 0.64 0.77 16 19 N -0.48 -6.99 5.88 -906.85 -5.33 -12.33 16 20 C 0.07 0.85 4.88 85.56 0.42 1.26 16 21 C 0.12 2.03 6.36 42.55 0.27 2.30 16 22 C -0.13 -2.11 9.72 22.35 0.22 -1.89 16 23 C -0.11 -1.85 10.16 22.51 0.23 -1.62 16 24 C 0.03 0.56 7.35 22.47 0.17 0.73 16 25 F -0.14 -2.56 17.28 44.97 0.78 -1.79 16 26 C 0.07 1.17 11.17 84.73 0.95 2.12 16 27 N -0.46 -8.21 10.27 -183.70 -1.89 -10.10 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 30 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.41 7.30 6.22 -92.71 -0.58 6.72 16 32 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.38 7.88 -2.38 -0.02 1.36 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 1.14 7.94 -2.39 -0.02 1.13 16 36 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.09 0.80 7.42 -2.39 -0.02 0.79 16 38 H 0.10 0.99 6.17 -2.39 -0.01 0.98 16 39 H 0.08 0.86 7.30 -2.39 -0.02 0.84 16 40 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -78.12 374.65 -1.38 -79.50 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.48 Total: 17.19 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.01 Total: -7.06 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -9.46 Total: -97.41 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -78.12 -1.38 -79.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483629996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.311 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds