Wall clock time and date at job start Tue Mar 31 2020 22:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99921 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99671 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99382 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 0.02562 * 7 2 1 9 9 S 1.76209 * 119.99599 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99875 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99654 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99561 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47105 * 180.02562 * 14 13 11 16 16 H 1.09004 * 112.95539 * 287.14746 * 15 14 13 17 17 C 1.53934 * 113.76495 * 155.49924 * 15 14 13 18 18 C 1.53939 * 86.33981 * 221.96342 * 17 15 14 19 19 N 1.47954 * 86.18225 * 23.71486 * 18 17 15 20 20 C 1.46904 * 111.00268 * 222.41683 * 19 18 17 21 21 C 1.50698 * 109.47233 * 269.36232 * 20 19 18 22 22 C 1.38241 * 119.59042 * 94.72067 * 21 20 19 23 23 C 1.38592 * 119.18916 * 179.77356 * 22 21 20 24 24 C 1.38869 * 118.39898 * 0.49430 * 23 22 21 25 25 F 1.35100 * 120.44755 * 179.73118 * 24 23 22 26 26 C 1.38423 * 119.11716 * 359.75060 * 24 23 22 27 27 N 1.31846 * 119.59020 * 274.99973 * 21 20 19 28 28 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47385 * 299.99956 * 10 9 7 30 30 H 1.09005 * 109.47046 * 60.00118 * 10 9 7 31 31 H 0.96993 * 120.00373 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47217 * 300.00298 * 14 13 11 33 33 H 1.09005 * 109.47093 * 60.00385 * 14 13 11 34 34 H 1.09002 * 113.72575 * 336.31545 * 17 15 14 35 35 H 1.08987 * 113.73621 * 107.59826 * 17 15 14 36 36 H 1.09004 * 113.75937 * 138.03370 * 18 17 15 37 37 H 1.08999 * 113.75509 * 269.28548 * 18 17 15 38 38 H 1.08996 * 109.46496 * 29.36115 * 20 19 18 39 39 H 1.08996 * 109.47027 * 149.36316 * 20 19 18 40 40 H 1.08002 * 120.40150 * 0.02562 * 22 21 20 41 41 H 1.07998 * 120.79798 * 180.26703 * 23 22 21 42 42 H 1.07994 * 119.64277 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7000 6 1 1.4479 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3439 -2.2965 0.0014 13 7 6.0455 -4.4949 0.0011 14 6 7.4906 -4.7360 0.0016 15 6 7.7562 -6.2427 0.0012 16 1 7.5383 -6.7131 0.9601 17 6 9.1266 -6.6309 -0.5826 18 6 8.3889 -7.7821 -1.2898 19 7 7.1720 -6.9509 -1.1591 20 6 6.0190 -7.7655 -0.7528 21 6 5.3045 -8.2719 -1.9793 22 6 5.6067 -9.5260 -2.4763 23 6 4.9413 -9.9853 -3.6019 24 6 3.9981 -9.1568 -4.1955 25 9 3.3289 -9.5607 -5.2975 26 6 3.7529 -7.9113 -3.6435 27 7 4.4030 -7.5111 -2.5682 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4319 0.8906 30 1 3.6439 -3.4315 -0.8894 31 1 5.4289 -5.2436 0.0011 32 1 7.9338 -4.2891 -0.8883 33 1 7.9332 -4.2889 0.8917 34 1 9.5383 -5.8883 -1.2662 35 1 9.8442 -6.9644 0.1668 36 1 8.7052 -7.9386 -2.3211 37 1 8.3570 -8.7047 -0.7102 38 1 6.3634 -8.6113 -0.1578 39 1 5.3359 -7.1579 -0.1594 40 1 6.3494 -10.1419 -1.9909 41 1 5.1538 -10.9625 -4.0096 42 1 3.0209 -7.2603 -4.0980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483629997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:12 Heat of formation + Delta-G solvation = -7.222615 kcal Electronic energy + Delta-G solvation = -25990.947112 eV Core-core repulsion = 22013.016696 eV Total energy + Delta-G solvation = -3977.930416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.31325 -41.01522 -40.03528 -38.84423 -34.36166 -33.19405 -32.87272 -32.37770 -30.20789 -29.43103 -27.65805 -25.54724 -25.34196 -24.31732 -23.42891 -22.23976 -20.46627 -19.95293 -18.03128 -17.86918 -17.63121 -17.05801 -16.47923 -16.42698 -16.05943 -16.01837 -15.27177 -15.06764 -14.91400 -14.63084 -14.38872 -14.15145 -13.79455 -13.67815 -13.54907 -13.40504 -13.15329 -12.82236 -12.74065 -12.47928 -11.96107 -11.83847 -11.71945 -11.30336 -11.22628 -11.12853 -10.95602 -10.52106 -10.34448 -9.91554 -9.80103 -9.46346 -9.29120 -9.17034 -8.95055 -8.81948 -8.42262 -6.84027 -6.23151 -3.93793 0.48266 0.70221 2.82807 3.04309 3.11479 3.34601 3.38028 3.54289 3.55989 3.60222 3.77105 3.86578 4.10176 4.16468 4.33454 4.36310 4.38754 4.42869 4.68266 4.75059 4.81345 4.84240 4.89709 4.93761 5.07213 5.15976 5.23523 5.32873 5.34929 5.42279 5.43361 5.45632 5.58352 5.69710 5.85924 5.87225 5.93272 6.14202 6.20681 6.55429 6.66459 7.52181 7.73744 8.00223 8.48256 8.61927 9.23324 10.86202 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.002832 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.861605 B = 9883.681882 C =12189.875648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.268 1.268 5 H -0.235 1.235 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.532 3.468 12 O -0.524 6.524 13 N -0.729 5.729 14 C 0.143 3.857 15 C 0.019 3.981 16 H 0.088 0.912 17 C -0.134 4.134 18 C -0.001 4.001 19 N -0.461 5.461 20 C 0.067 3.933 21 C 0.132 3.868 22 C -0.138 4.138 23 C -0.109 4.109 24 C 0.044 3.956 25 F -0.131 7.131 26 C 0.084 3.916 27 N -0.434 5.434 28 H 0.270 0.730 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.397 0.603 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.668 -25.676 -3.312 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.193 1.193 5 H -0.159 1.159 6 H -0.200 1.200 7 C -0.666 4.666 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.399 6.399 13 N -0.383 5.383 14 C 0.018 3.982 15 C -0.090 4.090 16 H 0.106 0.894 17 C -0.172 4.172 18 C -0.130 4.130 19 N -0.185 5.185 20 C -0.061 4.061 21 C -0.007 4.007 22 C -0.159 4.159 23 C -0.136 4.136 24 C 0.022 3.978 25 F -0.109 7.109 26 C -0.075 4.075 27 N -0.142 5.142 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.232 0.768 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 17.326 -22.826 -3.549 28.875 hybrid contribution -1.027 -2.278 0.023 2.499 sum 16.299 -25.103 -3.526 30.137 Atomic orbital electron populations 1.69948 1.05916 1.27671 1.48351 1.24713 0.94441 0.98937 0.93257 0.86733 0.81953 0.83288 0.79877 1.19263 1.15871 1.20016 1.22336 0.88366 0.97507 1.58440 0.89412 1.84743 1.09153 1.00370 1.97419 1.23264 0.94206 1.04049 1.05783 1.20234 0.90520 0.82280 0.75180 1.90688 1.58794 1.42230 1.48159 1.45832 1.07254 1.07943 1.77295 1.21173 0.82124 0.92350 1.02526 1.23795 0.95263 0.95806 0.94159 0.89398 1.23335 0.95495 0.98380 0.99996 1.23998 0.91206 0.95594 1.02181 1.68585 1.01234 1.17851 1.30781 1.21589 0.94339 0.97674 0.92548 1.21035 0.93237 0.90179 0.96236 1.21852 1.00504 0.97084 0.96441 1.21614 0.95279 1.00529 0.96154 1.18870 0.95905 0.96016 0.86989 1.91535 1.78599 1.90635 1.50150 1.23045 0.98797 0.92941 0.92726 1.67585 1.05589 1.33690 1.07346 0.92021 0.88752 0.88336 0.76789 0.90951 0.91082 0.88475 0.90357 0.89168 0.90975 0.91587 0.88870 0.84176 0.83599 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.08 13.97 55.49 0.78 -26.31 16 2 C 0.09 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 22.22 27.74 -169.99 -4.71 17.51 16 4 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.23 -6.09 6.74 56.52 0.38 -5.71 16 6 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 8 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 9 S -0.14 -3.75 18.55 -107.50 -1.99 -5.74 16 10 C -0.12 -2.50 6.16 36.01 0.22 -2.28 16 11 C 0.53 9.95 7.85 -10.98 -0.09 9.87 16 12 O -0.52 -11.69 15.86 5.56 0.09 -11.61 16 13 N -0.73 -9.97 5.50 -60.29 -0.33 -10.30 16 14 C 0.14 1.60 5.80 -4.04 -0.02 1.58 16 15 C 0.02 0.14 3.38 -66.66 -0.23 -0.08 16 16 H 0.09 0.52 7.93 -51.93 -0.41 0.11 16 17 C -0.13 -0.76 7.84 -25.80 -0.20 -0.96 16 18 C 0.00 -0.01 7.95 -2.77 -0.02 -0.03 16 19 N -0.46 -3.72 5.83 -232.14 -1.35 -5.08 16 20 C 0.07 0.50 4.95 -4.97 -0.02 0.47 16 21 C 0.13 1.18 6.34 -82.59 -0.52 0.66 16 22 C -0.14 -0.93 9.72 -39.45 -0.38 -1.31 16 23 C -0.11 -0.78 10.16 -39.22 -0.40 -1.17 16 24 C 0.04 0.40 7.34 -39.28 -0.29 0.11 16 25 F -0.13 -1.27 17.28 2.25 0.04 -1.23 16 26 C 0.08 0.86 11.17 -17.46 -0.20 0.67 16 27 N -0.43 -4.97 10.27 -9.42 -0.10 -5.06 16 28 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 30 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 31 H 0.40 4.71 6.54 -40.82 -0.27 4.44 16 32 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.08 0.32 8.14 -51.94 -0.42 -0.10 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.26 7.48 -51.93 -0.39 -0.13 16 38 H 0.07 0.32 7.28 -51.93 -0.38 -0.06 16 39 H 0.09 0.75 6.40 -51.93 -0.33 0.42 16 40 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -36.20 372.87 -9.47 -45.67 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.56 Total: 1.28 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.94 Total: -4.75 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -1.01 Total: -46.74 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.20 -9.47 -45.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483629997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.445 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds