Wall clock time and date at job start Tue Mar 31 2020 22:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99921 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99671 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99382 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 0.02562 * 7 2 1 9 9 S 1.76209 * 119.99599 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99875 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99654 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99561 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47105 * 180.02562 * 14 13 11 16 16 H 1.09004 * 112.95539 * 287.14746 * 15 14 13 17 17 C 1.53934 * 113.76495 * 155.49924 * 15 14 13 18 18 C 1.53939 * 86.33981 * 221.96342 * 17 15 14 19 19 N 1.47954 * 86.18225 * 23.71486 * 18 17 15 20 20 C 1.46904 * 111.00268 * 222.41683 * 19 18 17 21 21 C 1.50698 * 109.47233 * 269.36232 * 20 19 18 22 22 C 1.38241 * 119.59042 * 94.72067 * 21 20 19 23 23 C 1.38592 * 119.18916 * 179.77356 * 22 21 20 24 24 C 1.38869 * 118.39898 * 0.49430 * 23 22 21 25 25 F 1.35100 * 120.44755 * 179.73118 * 24 23 22 26 26 C 1.38423 * 119.11716 * 359.75060 * 24 23 22 27 27 N 1.31846 * 119.59020 * 274.99973 * 21 20 19 28 28 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47385 * 299.99956 * 10 9 7 30 30 H 1.09005 * 109.47046 * 60.00118 * 10 9 7 31 31 H 0.96993 * 120.00373 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47217 * 300.00298 * 14 13 11 33 33 H 1.09005 * 109.47093 * 60.00385 * 14 13 11 34 34 H 1.09002 * 113.72575 * 336.31545 * 17 15 14 35 35 H 1.08987 * 113.73621 * 107.59826 * 17 15 14 36 36 H 1.09004 * 113.75937 * 138.03370 * 18 17 15 37 37 H 1.08999 * 113.75509 * 269.28548 * 18 17 15 38 38 H 1.08996 * 109.46496 * 29.36115 * 20 19 18 39 39 H 1.08996 * 109.47027 * 149.36316 * 20 19 18 40 40 H 1.08002 * 120.40150 * 0.02562 * 22 21 20 41 41 H 1.07998 * 120.79798 * 180.26703 * 23 22 21 42 42 H 1.07994 * 119.64277 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7000 6 1 1.4479 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5730 -3.2327 0.0008 12 8 6.3439 -2.2965 0.0014 13 7 6.0455 -4.4949 0.0011 14 6 7.4906 -4.7360 0.0016 15 6 7.7562 -6.2427 0.0012 16 1 7.5383 -6.7131 0.9601 17 6 9.1266 -6.6309 -0.5826 18 6 8.3889 -7.7821 -1.2898 19 7 7.1720 -6.9509 -1.1591 20 6 6.0190 -7.7655 -0.7528 21 6 5.3045 -8.2719 -1.9793 22 6 5.6067 -9.5260 -2.4763 23 6 4.9413 -9.9853 -3.6019 24 6 3.9981 -9.1568 -4.1955 25 9 3.3289 -9.5607 -5.2975 26 6 3.7529 -7.9113 -3.6435 27 7 4.4030 -7.5111 -2.5682 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4319 0.8906 30 1 3.6439 -3.4315 -0.8894 31 1 5.4289 -5.2436 0.0011 32 1 7.9338 -4.2891 -0.8883 33 1 7.9332 -4.2889 0.8917 34 1 9.5383 -5.8883 -1.2662 35 1 9.8442 -6.9644 0.1668 36 1 8.7052 -7.9386 -2.3211 37 1 8.3570 -8.7047 -0.7102 38 1 6.3634 -8.6113 -0.1578 39 1 5.3359 -7.1579 -0.1594 40 1 6.3494 -10.1419 -1.9909 41 1 5.1538 -10.9625 -4.0096 42 1 3.0209 -7.2603 -4.0980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483629997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:11 Heat of formation + Delta-G solvation = -34.680083 kcal Electronic energy + Delta-G solvation = -25992.137757 eV Core-core repulsion = 22013.016696 eV Total energy + Delta-G solvation = -3979.121061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02286 -41.62558 -40.80128 -40.11552 -35.60521 -34.67467 -33.79951 -33.48932 -31.57834 -30.08752 -28.68452 -27.82588 -25.90638 -24.93432 -24.15731 -22.83253 -21.80731 -20.61063 -19.84298 -18.68193 -18.32636 -17.90909 -17.66925 -17.34072 -17.09113 -16.98949 -16.79039 -16.43217 -15.89061 -15.73042 -15.30642 -14.98503 -14.92920 -14.85653 -14.62496 -14.38843 -14.17161 -14.09390 -13.64845 -13.39787 -13.34989 -13.03142 -12.93163 -12.68408 -12.45130 -12.27939 -11.88597 -11.80104 -11.72819 -11.17128 -10.97284 -10.94405 -10.56763 -10.54854 -10.08804 -9.91402 -9.70785 -8.99770 -8.51777 -6.22649 -0.15151 0.10878 0.98708 1.31153 1.46845 1.55799 1.58987 2.20907 2.26094 2.48427 2.71356 2.86256 2.94939 3.03651 3.28967 3.57365 3.67207 3.77185 3.80734 3.83281 3.91718 4.13261 4.18973 4.21074 4.34750 4.39780 4.45703 4.46957 4.55216 4.68708 4.79975 4.84799 4.86654 4.88647 4.92892 5.05448 5.27740 5.33772 5.51147 5.60161 5.70544 6.08022 6.10880 6.46148 6.87745 6.93095 7.20263 8.60931 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.002832 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.861605 B = 9883.681882 C =12189.875648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.237 1.237 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.059 0.941 9 S -0.171 6.171 10 C -0.110 4.110 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.705 5.705 14 C 0.139 3.861 15 C 0.025 3.975 16 H 0.112 0.888 17 C -0.127 4.127 18 C 0.007 3.993 19 N -0.492 5.492 20 C 0.067 3.933 21 C 0.118 3.882 22 C -0.126 4.126 23 C -0.103 4.103 24 C 0.031 3.969 25 F -0.139 7.139 26 C 0.060 3.940 27 N -0.473 5.473 28 H 0.277 0.723 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.409 0.591 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.180 0.820 41 H 0.175 0.825 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.175 -28.066 -2.489 34.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.161 1.161 6 H -0.182 1.182 7 C -0.678 4.678 8 H 0.078 0.922 9 S 0.056 5.944 10 C -0.261 4.261 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.358 5.358 14 C 0.015 3.985 15 C -0.084 4.084 16 H 0.130 0.870 17 C -0.165 4.165 18 C -0.121 4.121 19 N -0.215 5.215 20 C -0.061 4.061 21 C -0.021 4.021 22 C -0.145 4.145 23 C -0.130 4.130 24 C 0.009 3.991 25 F -0.117 7.117 26 C -0.098 4.098 27 N -0.182 5.182 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.245 0.755 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.197 0.803 41 H 0.193 0.807 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 19.827 -25.274 -2.735 32.239 hybrid contribution -1.773 -1.717 -0.241 2.480 sum 18.054 -26.991 -2.976 32.608 Atomic orbital electron populations 1.70025 1.07328 1.29045 1.49171 1.25584 0.95302 1.02301 0.92811 0.85848 0.80639 0.79432 0.80338 1.18441 1.16136 1.18225 1.22465 0.90315 0.96659 1.58315 0.92248 1.84620 1.06341 1.05912 1.97560 1.23247 0.96265 0.99698 1.06917 1.19893 0.89244 0.83495 0.75389 1.90673 1.59226 1.43744 1.50643 1.45678 1.08963 1.06398 1.74751 1.21396 0.79753 0.95630 1.01712 1.23787 0.96523 0.92795 0.95289 0.87024 1.23296 0.94935 0.98159 1.00156 1.24066 0.89322 0.96269 1.02476 1.68540 1.02437 1.19302 1.31253 1.21684 0.93849 0.98614 0.91984 1.21483 0.92840 0.91022 0.96711 1.22227 1.00283 0.96316 0.95719 1.21991 0.93924 1.01198 0.95851 1.19001 0.96802 0.96193 0.87124 1.91509 1.78974 1.90643 1.50612 1.23041 0.99546 0.93879 0.93354 1.67534 1.07104 1.35344 1.08192 0.91335 0.87094 0.87761 0.75452 0.92800 0.90904 0.89883 0.88029 0.89601 0.88001 0.88135 0.90192 0.80294 0.80724 0.81843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.19 13.97 21.65 0.30 -56.89 16 2 C 0.05 2.73 5.50 84.86 0.47 3.20 16 3 Si 0.92 46.13 27.74 68.60 1.90 48.03 16 4 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.24 -11.99 6.74 99.48 0.67 -11.32 16 6 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -32.00 10.04 67.95 0.68 -31.31 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 9 S -0.17 -9.02 18.55 -56.49 -1.05 -10.07 16 10 C -0.11 -4.52 6.16 71.24 0.44 -4.08 16 11 C 0.53 19.87 7.85 87.66 0.69 20.56 16 12 O -0.56 -25.31 15.86 -3.04 -0.05 -25.36 16 13 N -0.70 -18.59 5.50 -463.05 -2.55 -21.14 16 14 C 0.14 2.93 5.80 86.38 0.50 3.43 16 15 C 0.03 0.30 3.38 45.02 0.15 0.45 16 16 H 0.11 0.85 7.93 -2.38 -0.02 0.83 16 17 C -0.13 -1.04 7.84 31.24 0.25 -0.79 16 18 C 0.01 0.05 7.95 86.41 0.69 0.73 16 19 N -0.49 -6.60 5.83 -888.35 -5.18 -11.78 16 20 C 0.07 0.79 4.95 85.56 0.42 1.22 16 21 C 0.12 1.89 6.34 42.56 0.27 2.16 16 22 C -0.13 -1.26 9.72 22.35 0.22 -1.04 16 23 C -0.10 -1.22 10.16 22.51 0.23 -0.99 16 24 C 0.03 0.55 7.34 22.46 0.16 0.71 16 25 F -0.14 -2.71 17.28 44.97 0.78 -1.94 16 26 C 0.06 1.29 11.17 84.73 0.95 2.24 16 27 N -0.47 -10.86 10.27 -183.71 -1.89 -12.75 16 28 H 0.28 15.92 8.31 -92.70 -0.77 15.15 16 29 H 0.11 4.16 8.14 -2.40 -0.02 4.15 16 30 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 31 H 0.41 9.17 6.54 -92.71 -0.61 8.56 16 32 H 0.05 1.36 7.91 -2.39 -0.02 1.34 16 33 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 0.93 7.94 -2.39 -0.02 0.91 16 35 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 0.70 8.14 -2.38 -0.02 0.69 16 37 H 0.10 0.14 7.48 -2.39 -0.02 0.12 16 38 H 0.10 0.46 7.28 -2.39 -0.02 0.44 16 39 H 0.08 1.13 6.40 -2.39 -0.02 1.12 16 40 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 41 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -81.20 372.87 -1.20 -82.41 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.41 Total: 12.99 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 6.11 Total: -3.51 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -9.31 Total: -102.55 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -81.20 -1.20 -82.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483629997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.727 kcal (2) G-P(sol) polarization free energy of solvation -81.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds