Wall clock time and date at job start Tue Mar 31 2020 22:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47190 * 270.00261 * 3 2 1 5 5 H 1.48502 * 109.47147 * 30.00630 * 3 2 1 6 6 H 1.48503 * 109.46745 * 150.00692 * 3 2 1 7 7 C 1.38948 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00161 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00019 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00379 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99574 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47144 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00031 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46764 * 184.91129 * 14 13 12 16 16 H 1.08993 * 110.00035 * 55.70691 * 15 14 13 17 17 C 1.54326 * 109.88356 * 294.61040 * 15 14 13 18 18 C 1.55152 * 102.94713 * 218.39478 * 17 15 14 19 19 C 1.54904 * 101.61481 * 35.48022 * 18 17 15 20 20 N 1.47024 * 109.88001 * 176.80601 * 15 14 13 21 21 C 1.34767 * 125.64970 * 298.41070 * 20 15 14 22 22 O 1.21570 * 119.99974 * 4.69621 * 21 20 15 23 23 C 1.47760 * 120.00292 * 184.69083 * 21 20 15 24 24 C 1.39346 * 124.11648 * 179.72589 * 23 21 20 25 25 N 1.30091 * 112.14205 * 179.85247 * 24 23 21 26 26 S 1.55918 * 108.75604 * 0.40017 * 25 24 23 27 27 N 1.31485 * 124.11313 * 0.02661 * 23 21 20 28 28 H 0.96998 * 120.00223 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99893 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47261 * 60.00299 * 12 10 9 31 31 H 1.08998 * 109.47561 * 300.00514 * 12 10 9 32 32 H 1.00903 * 110.99625 * 56.04860 * 13 12 10 33 33 H 1.08998 * 109.47141 * 64.91528 * 14 13 12 34 34 H 1.08998 * 109.47074 * 304.90606 * 14 13 12 35 35 H 1.09002 * 110.71560 * 100.02763 * 17 15 14 36 36 H 1.09003 * 110.71948 * 336.75771 * 17 15 14 37 37 H 1.08994 * 111.00743 * 153.57655 * 18 17 15 38 38 H 1.09000 * 111.00133 * 277.39256 * 18 17 15 39 39 H 1.09001 * 110.36798 * 81.85070 * 19 18 17 40 40 H 1.09001 * 110.36983 * 204.17088 * 19 18 17 41 41 H 1.07999 * 123.92770 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6527 0.7002 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 7 2.1983 -5.9794 -0.0017 14 6 1.4979 -7.2708 -0.0006 15 6 2.5184 -8.4042 0.1221 16 1 3.1321 -8.2587 1.0110 17 6 3.4144 -8.4420 -1.1338 18 6 3.6038 -9.9621 -1.3800 19 6 2.2235 -10.5215 -0.9541 20 7 1.8226 -9.6970 0.2010 21 6 0.9607 -10.0674 1.1685 22 8 0.6363 -9.2734 2.0301 23 6 0.4099 -11.4384 1.1821 24 6 -0.4809 -11.9133 2.1427 25 7 -0.8174 -13.1517 1.9297 26 16 -0.0757 -13.6608 0.6562 27 7 0.7050 -12.3605 0.2925 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6161 -4.9205 -0.8903 31 1 0.6180 -4.9208 0.8896 32 1 2.8337 -5.9124 0.7792 33 1 0.9407 -7.3828 -0.9306 34 1 0.8088 -7.3096 0.8430 35 1 4.3726 -7.9606 -0.9385 36 1 2.9118 -7.9740 -1.9803 37 1 3.8002 -10.1660 -2.4326 38 1 4.3988 -10.3636 -0.7516 39 1 1.5035 -10.4130 -1.7653 40 1 2.3120 -11.5678 -0.6618 41 1 -0.8511 -11.3212 2.9666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483922021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:43 Heat of formation + Delta-G solvation = 4.998698 kcal Electronic energy + Delta-G solvation = -26255.846135 eV Core-core repulsion = 22298.365637 eV Total energy + Delta-G solvation = -3957.480498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61230 -39.97212 -38.24017 -37.66307 -35.28227 -34.14899 -33.76372 -31.77179 -31.21091 -30.23892 -27.87485 -26.76720 -24.95703 -24.20572 -22.91734 -22.27153 -21.09529 -19.86249 -19.75082 -19.08503 -17.86046 -17.41302 -16.93290 -16.43003 -16.14392 -15.68021 -15.38325 -15.11181 -14.57169 -14.53073 -14.31933 -13.83629 -13.72123 -13.51380 -13.33121 -12.98089 -12.64570 -12.45747 -12.25192 -11.95466 -11.73145 -11.68629 -11.61951 -11.58670 -11.46216 -11.06050 -10.97645 -10.84577 -10.79336 -10.37213 -10.34725 -10.18669 -9.68263 -9.47569 -8.94423 -8.40089 -8.00942 -7.92038 -6.38258 -3.79018 -0.04818 0.91573 1.11723 1.15905 2.53164 2.75160 3.20338 3.28587 3.34646 3.88906 3.95481 4.15015 4.18701 4.33990 4.50133 4.59859 4.65384 4.78021 4.98278 5.04842 5.17365 5.19125 5.27071 5.33702 5.52672 5.61754 5.66643 5.75102 5.84442 5.87686 5.95471 5.96063 6.04490 6.16450 6.21036 6.32162 7.10381 7.23636 7.58384 7.66039 7.73174 8.09897 8.65037 9.21261 9.58290 10.09747 10.79577 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.001961 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.697860 B =14271.947467 C =15079.582013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.663 5.663 14 C 0.047 3.953 15 C 0.141 3.859 16 H 0.080 0.920 17 C -0.114 4.114 18 C -0.138 4.138 19 C 0.098 3.902 20 N -0.593 5.593 21 C 0.614 3.386 22 O -0.517 6.517 23 C 0.019 3.981 24 C 0.091 3.909 25 N -0.575 5.575 26 S 0.707 5.293 27 N -0.542 5.542 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.349 0.651 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 -29.783 -1.326 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.296 5.296 14 C -0.083 4.083 15 C 0.038 3.962 16 H 0.098 0.902 17 C -0.152 4.152 18 C -0.177 4.177 19 C -0.025 4.025 20 N -0.326 5.326 21 C 0.396 3.604 22 O -0.392 6.392 23 C -0.156 4.156 24 C -0.102 4.102 25 N -0.416 5.416 26 S 0.750 5.250 27 N -0.392 5.392 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.168 0.832 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.170 -31.100 -2.391 31.192 hybrid contribution -0.702 2.415 1.689 3.030 sum -0.872 -28.685 -0.702 28.707 Atomic orbital electron populations 1.69614 1.05934 1.28113 1.50695 1.25268 0.95642 0.99727 0.97412 0.85853 0.79210 0.80820 0.78362 1.20418 1.20971 1.19433 1.19701 0.93361 0.82238 1.47492 0.87918 1.41866 1.09223 1.04604 1.64428 1.19793 0.88361 0.84697 0.84332 1.90512 1.13743 1.87094 1.55415 1.21657 0.94337 0.90797 1.01286 1.60086 1.18737 0.99576 1.51162 1.22315 0.95659 0.88739 1.01622 1.21664 0.92977 0.81688 0.99894 0.90163 1.22621 1.00362 0.95314 0.96880 1.22872 0.96305 0.96262 1.02226 1.22669 0.95834 0.96486 0.87546 1.48288 1.43105 1.17032 1.24194 1.16374 0.78799 0.83767 0.81414 1.90872 1.59209 1.51263 1.37871 1.22493 1.02177 0.96718 0.94221 1.23805 0.95559 0.89828 1.01036 1.72275 1.29571 1.16864 1.22891 1.79158 1.19390 1.16538 1.09921 1.72742 1.27734 1.08250 1.30429 0.91903 0.77448 0.89692 0.93736 0.83220 0.91081 0.93562 0.89275 0.89625 0.89685 0.90772 0.91256 0.88151 0.76823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.63 5.29 -10.97 -0.06 -14.69 16 10 C 0.44 10.68 7.82 -10.99 -0.09 10.60 16 11 O -0.58 -15.99 15.78 5.55 0.09 -15.90 16 12 C 0.05 0.96 6.16 -4.98 -0.03 0.93 16 13 N -0.66 -10.98 5.92 -115.05 -0.68 -11.66 16 14 C 0.05 0.65 5.08 -3.82 -0.02 0.63 16 15 C 0.14 1.63 3.04 -66.95 -0.20 1.43 16 16 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.11 -1.12 6.25 -24.90 -0.16 -1.27 16 18 C -0.14 -1.02 7.08 -24.59 -0.17 -1.19 16 19 C 0.10 0.81 6.25 -2.51 -0.02 0.79 16 20 N -0.59 -6.38 3.07 -164.11 -0.50 -6.89 16 21 C 0.61 7.29 7.67 -12.37 -0.09 7.20 16 22 O -0.52 -7.57 15.62 5.30 0.08 -7.49 16 23 C 0.02 0.18 6.71 -83.71 -0.56 -0.38 16 24 C 0.09 0.79 11.22 -17.88 -0.20 0.59 16 25 N -0.58 -4.75 11.41 19.42 0.22 -4.53 16 26 S 0.71 4.13 23.69 -107.50 -2.55 1.58 16 27 N -0.54 -4.35 8.22 23.17 0.19 -4.16 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.35 6.00 8.36 -39.29 -0.33 5.67 16 33 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.05 0.71 6.59 -51.93 -0.34 0.37 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.91 7.80 -51.93 -0.40 0.50 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.78 5.82 -51.93 -0.30 0.48 16 41 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -33.52 360.41 -8.87 -42.39 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.01 Total: 12.64 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.78 Total: 11.19 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.11 Total: -66.15 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -2.55 Total: 1.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.52 -8.87 -42.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483922021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.390 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds