Wall clock time and date at job start Tue Mar 31 2020 22:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47145 * 300.00490 * 3 2 1 6 6 H 1.48504 * 109.46682 * 60.00181 * 3 2 1 7 7 C 1.38959 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99960 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99447 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99727 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99638 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99892 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99982 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46924 * 180.02562 * 14 13 12 16 16 H 1.08998 * 110.00297 * 296.10279 * 15 14 13 17 17 C 1.54327 * 109.88311 * 175.00195 * 15 14 13 18 18 C 1.55156 * 102.94352 * 218.39471 * 17 15 14 19 19 C 1.54909 * 101.58170 * 35.50355 * 18 17 15 20 20 N 1.47031 * 109.87989 * 57.19768 * 15 14 13 21 21 C 1.34775 * 125.64581 * 298.31040 * 20 15 14 22 22 O 1.21623 * 120.00317 * 0.02562 * 21 20 15 23 23 C 1.47178 * 119.99641 * 179.97438 * 21 20 15 24 24 C 1.38237 * 128.47568 * 179.97438 * 23 21 20 25 25 N 1.31240 * 111.89030 * 180.02562 * 24 23 21 26 26 N 1.27334 * 120.03479 * 359.97438 * 25 24 23 27 27 S 1.56633 * 109.74216 * 359.69826 * 26 25 24 28 28 H 0.96989 * 120.00385 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00670 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.47057 * 60.00055 * 12 10 9 31 31 H 1.09000 * 109.47681 * 299.99761 * 12 10 9 32 32 H 1.00891 * 111.00069 * 303.96209 * 13 12 10 33 33 H 1.09003 * 109.46408 * 60.00775 * 14 13 12 34 34 H 1.08994 * 109.47692 * 300.00527 * 14 13 12 35 35 H 1.09004 * 110.71640 * 336.76029 * 17 15 14 36 36 H 1.09007 * 110.71777 * 99.85130 * 17 15 14 37 37 H 1.09005 * 111.00352 * 153.57738 * 18 17 15 38 38 H 1.09004 * 111.00391 * 277.39103 * 18 17 15 39 39 H 1.09000 * 110.36621 * 81.82836 * 19 18 17 40 40 H 1.09003 * 110.36411 * 204.04512 * 19 18 17 41 41 H 1.08008 * 124.05494 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0090 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5579 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1986 -5.9795 -0.0027 14 6 1.4983 -7.2709 -0.0026 15 6 2.5232 -8.4068 -0.0025 16 1 3.1076 -8.3818 -0.9223 17 6 1.8014 -9.7650 0.1239 18 6 2.7443 -10.5744 1.0530 19 6 3.2608 -9.4709 2.0096 20 7 3.4142 -8.2761 1.1597 21 6 4.2358 -7.2367 1.4067 22 8 4.2811 -6.3000 0.6322 23 6 5.0772 -7.2345 2.6142 24 6 5.9738 -6.2706 3.0360 25 7 6.5532 -6.6023 4.1659 26 7 6.2591 -7.7034 4.7337 27 16 5.1827 -8.4641 3.8876 28 1 -0.4850 0.8399 0.0004 29 1 0.3535 -2.3907 -0.0016 30 1 0.6176 -4.9205 -0.8925 31 1 0.6169 -4.9210 0.8875 32 1 2.8335 -5.9120 -0.7839 33 1 0.8732 -7.3451 -0.8926 34 1 0.8736 -7.3455 0.8874 35 1 0.8212 -9.6394 0.5840 36 1 1.7099 -10.2453 -0.8503 37 1 2.1921 -11.3387 1.6000 38 1 3.5642 -11.0173 0.4875 39 1 2.5341 -9.2835 2.8001 40 1 4.2207 -9.7593 2.4382 41 1 6.1736 -5.3545 2.4999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483924899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:22 Heat of formation + Delta-G solvation = 39.185275 kcal Electronic energy + Delta-G solvation = -27299.656960 eV Core-core repulsion = 23343.658903 eV Total energy + Delta-G solvation = -3955.998057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82488 -40.21089 -38.06072 -37.38485 -35.15298 -33.69302 -32.43889 -31.50771 -31.11477 -30.31166 -27.54627 -26.84367 -24.81221 -23.90030 -23.18502 -21.99378 -21.02115 -19.54800 -19.27193 -18.84039 -17.77736 -17.12926 -16.94995 -16.19450 -15.80338 -15.42049 -15.25830 -14.63725 -14.46798 -14.36872 -14.13727 -13.92580 -13.68548 -13.36499 -13.31032 -12.88903 -12.74443 -12.44193 -12.18917 -12.07989 -11.79673 -11.61104 -11.52665 -11.34890 -11.18946 -11.10280 -10.96606 -10.27594 -10.13436 -10.13018 -10.05624 -9.83225 -9.70469 -9.40113 -8.77936 -8.19621 -7.84450 -7.66575 -6.32136 -3.71874 -0.27670 0.73858 1.41805 2.01335 2.71672 3.22606 3.23766 3.32201 3.40193 3.95224 4.04276 4.07201 4.15038 4.24623 4.43900 4.51808 4.71722 4.75968 4.83142 5.06766 5.08406 5.22672 5.28759 5.34538 5.39910 5.42320 5.51731 5.54324 5.67411 5.71825 5.89523 5.97815 6.10464 6.21546 6.40876 7.38046 7.39790 7.62274 7.64582 7.92946 8.18220 8.30054 8.74395 9.29734 9.67322 10.20814 10.86296 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003220 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.107352 B = 8692.690252 C =10505.294084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.293 4.293 8 H 0.102 0.898 9 N -0.572 5.572 10 C 0.443 3.557 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.644 5.644 14 C 0.045 3.955 15 C 0.147 3.853 16 H 0.077 0.923 17 C -0.126 4.126 18 C -0.127 4.127 19 C 0.088 3.912 20 N -0.610 5.610 21 C 0.598 3.402 22 O -0.425 6.425 23 C -0.257 4.257 24 C 0.069 3.931 25 N -0.249 5.249 26 N -0.278 5.278 27 S 0.392 5.608 28 H 0.269 0.731 29 H 0.390 0.610 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.358 0.642 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -25.643 2.886 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.182 4.182 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.423 4.423 8 H 0.120 0.880 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.280 5.280 14 C -0.086 4.086 15 C 0.043 3.957 16 H 0.095 0.905 17 C -0.165 4.165 18 C -0.165 4.165 19 C -0.037 4.037 20 N -0.349 5.349 21 C 0.381 3.619 22 O -0.292 6.292 23 C -0.398 4.398 24 C -0.096 4.096 25 N -0.114 5.114 26 N -0.258 5.258 27 S 0.527 5.473 28 H 0.079 0.921 29 H 0.223 0.777 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.181 0.819 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.232 -25.840 4.750 26.471 hybrid contribution -0.918 1.888 -1.809 2.771 sum 2.314 -23.952 2.941 24.243 Atomic orbital electron populations 1.69619 1.05891 1.27781 1.51539 1.25224 0.95606 0.99573 0.97760 0.85834 0.79756 0.81377 0.77589 1.19251 1.20893 1.20862 1.19738 0.93332 0.82314 1.46871 0.87985 1.41885 1.09038 1.04613 1.65474 1.19847 0.88570 0.84627 0.84117 1.90573 1.13363 1.86839 1.53876 1.21698 0.94514 0.91932 1.00374 1.60577 1.16569 0.98569 1.52295 1.22468 0.95305 0.90259 1.00525 1.21592 0.90580 0.94454 0.89041 0.90507 1.22687 0.99004 0.93786 1.01014 1.22728 0.99652 0.96769 0.97388 1.22526 1.00815 0.85826 0.94511 1.48065 1.42288 1.19395 1.25118 1.15974 0.79813 0.82163 0.83984 1.91056 1.61735 1.31188 1.45229 1.28200 1.07138 1.00761 1.03719 1.24573 0.92192 1.01222 0.91635 1.70770 1.23472 1.08134 1.09016 1.78763 1.15521 1.06192 1.25282 1.82590 1.32104 1.24966 1.07665 0.92133 0.77720 0.94588 0.90425 0.81879 0.94833 0.91168 0.90028 0.89688 0.89449 0.90294 0.90662 0.91108 0.76514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.41 13.05 55.50 0.72 -24.68 16 2 C 0.02 0.53 5.50 -17.47 -0.10 0.43 16 3 Si 0.93 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.29 -8.44 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 9 N -0.57 -15.05 5.29 -10.96 -0.06 -15.10 16 10 C 0.44 10.90 7.82 -10.99 -0.09 10.81 16 11 O -0.56 -15.84 15.64 5.55 0.09 -15.75 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 N -0.64 -10.75 2.92 -115.05 -0.34 -11.08 16 14 C 0.05 0.53 5.26 -3.82 -0.02 0.51 16 15 C 0.15 1.38 3.28 -66.95 -0.22 1.16 16 16 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 17 C -0.13 -0.69 6.48 -24.90 -0.16 -0.85 16 18 C -0.13 -0.56 7.08 -24.58 -0.17 -0.74 16 19 C 0.09 0.59 5.74 -2.53 -0.01 0.58 16 20 N -0.61 -6.41 3.06 -164.36 -0.50 -6.92 16 21 C 0.60 8.44 7.42 -12.63 -0.09 8.35 16 22 O -0.43 -7.81 13.02 5.26 0.07 -7.74 16 23 C -0.26 -3.30 6.66 -35.95 -0.24 -3.54 16 24 C 0.07 0.96 11.55 -17.80 -0.21 0.75 16 25 N -0.25 -3.61 11.54 30.36 0.35 -3.26 16 26 N -0.28 -3.65 12.51 60.35 0.75 -2.90 16 27 S 0.39 3.80 19.60 -107.50 -2.11 1.69 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.39 9.85 7.90 -40.82 -0.32 9.52 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.36 6.59 7.16 -39.30 -0.28 6.31 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.08 0.41 7.80 -51.93 -0.41 0.00 16 36 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.42 5.18 -34.05 -0.18 0.25 16 41 H 0.22 2.97 8.06 -52.48 -0.42 2.54 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -35.39 354.93 -7.10 -42.49 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -4.92 Total: 11.44 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -1.49 Total: 9.72 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.93 Total: -63.95 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.16 Total: -23.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -2.11 Total: 1.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.39 -7.10 -42.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483924899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.677 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds