Wall clock time and date at job start Tue Mar 31 2020 22:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47145 * 300.00490 * 3 2 1 6 6 H 1.48504 * 109.46682 * 60.00181 * 3 2 1 7 7 C 1.38959 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99960 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99447 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99727 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99638 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99892 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99982 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46924 * 180.02562 * 14 13 12 16 16 H 1.08998 * 110.00297 * 296.10279 * 15 14 13 17 17 C 1.54327 * 109.88311 * 175.00195 * 15 14 13 18 18 C 1.55156 * 102.94352 * 218.39471 * 17 15 14 19 19 C 1.54909 * 101.58170 * 35.50355 * 18 17 15 20 20 N 1.47031 * 109.87989 * 57.19768 * 15 14 13 21 21 C 1.34775 * 125.64581 * 298.31040 * 20 15 14 22 22 O 1.21623 * 120.00317 * 0.02562 * 21 20 15 23 23 C 1.47178 * 119.99641 * 179.97438 * 21 20 15 24 24 C 1.38237 * 128.47568 * 179.97438 * 23 21 20 25 25 N 1.31240 * 111.89030 * 180.02562 * 24 23 21 26 26 N 1.27334 * 120.03479 * 359.97438 * 25 24 23 27 27 S 1.56633 * 109.74216 * 359.69826 * 26 25 24 28 28 H 0.96989 * 120.00385 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00670 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.47057 * 60.00055 * 12 10 9 31 31 H 1.09000 * 109.47681 * 299.99761 * 12 10 9 32 32 H 1.00891 * 111.00069 * 303.96209 * 13 12 10 33 33 H 1.09003 * 109.46408 * 60.00775 * 14 13 12 34 34 H 1.08994 * 109.47692 * 300.00527 * 14 13 12 35 35 H 1.09004 * 110.71640 * 336.76029 * 17 15 14 36 36 H 1.09007 * 110.71777 * 99.85130 * 17 15 14 37 37 H 1.09005 * 111.00352 * 153.57738 * 18 17 15 38 38 H 1.09004 * 111.00391 * 277.39103 * 18 17 15 39 39 H 1.09000 * 110.36621 * 81.82836 * 19 18 17 40 40 H 1.09003 * 110.36411 * 204.04512 * 19 18 17 41 41 H 1.08008 * 124.05494 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0090 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5579 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1986 -5.9795 -0.0027 14 6 1.4983 -7.2709 -0.0026 15 6 2.5232 -8.4068 -0.0025 16 1 3.1076 -8.3818 -0.9223 17 6 1.8014 -9.7650 0.1239 18 6 2.7443 -10.5744 1.0530 19 6 3.2608 -9.4709 2.0096 20 7 3.4142 -8.2761 1.1597 21 6 4.2358 -7.2367 1.4067 22 8 4.2811 -6.3000 0.6322 23 6 5.0772 -7.2345 2.6142 24 6 5.9738 -6.2706 3.0360 25 7 6.5532 -6.6023 4.1659 26 7 6.2591 -7.7034 4.7337 27 16 5.1827 -8.4641 3.8876 28 1 -0.4850 0.8399 0.0004 29 1 0.3535 -2.3907 -0.0016 30 1 0.6176 -4.9205 -0.8925 31 1 0.6169 -4.9210 0.8875 32 1 2.8335 -5.9120 -0.7839 33 1 0.8732 -7.3451 -0.8926 34 1 0.8736 -7.3455 0.8874 35 1 0.8212 -9.6394 0.5840 36 1 1.7099 -10.2453 -0.8503 37 1 2.1921 -11.3387 1.6000 38 1 3.5642 -11.0173 0.4875 39 1 2.5341 -9.2835 2.8001 40 1 4.2207 -9.7593 2.4382 41 1 6.1736 -5.3545 2.4999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483924899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:22 Heat of formation + Delta-G solvation = 11.704197 kcal Electronic energy + Delta-G solvation = -27300.848629 eV Core-core repulsion = 23343.658903 eV Total energy + Delta-G solvation = -3957.189726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82911 -41.07404 -39.98669 -38.31192 -36.49527 -35.69085 -33.42936 -33.19786 -32.29294 -31.26325 -28.51823 -28.27345 -26.33944 -24.99220 -24.32228 -22.76832 -21.76246 -21.00557 -20.49191 -19.96966 -19.74625 -18.13034 -17.78208 -17.64767 -17.00172 -16.68300 -16.45295 -16.28476 -15.88440 -15.70419 -15.18956 -15.05803 -14.91257 -14.64227 -14.16932 -14.01380 -13.86713 -13.51852 -13.43468 -13.37354 -13.03293 -12.95389 -12.76778 -12.47143 -12.39739 -12.29395 -12.13796 -11.91005 -11.56478 -11.47710 -11.08874 -10.99943 -10.80002 -10.76753 -10.22952 -9.96593 -9.63743 -8.87554 -8.45115 -5.92744 -1.26325 -0.20297 0.49153 0.95336 1.35587 1.39546 1.54389 1.86665 2.12131 2.21824 2.29856 2.98079 3.02333 3.22233 3.46753 3.56985 3.69835 3.75943 3.97721 3.99418 4.21529 4.34005 4.39132 4.52106 4.54935 4.58228 4.60598 4.65615 4.74238 4.80659 5.06094 5.12462 5.21495 5.41883 5.42657 5.48486 5.95736 6.23056 6.49488 6.60328 6.64024 6.65152 7.16875 7.30570 7.61399 8.19447 8.73101 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003220 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.107352 B = 8692.690252 C =10505.294084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.991 3.009 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.328 4.328 8 H 0.075 0.925 9 N -0.581 5.581 10 C 0.437 3.563 11 O -0.604 6.604 12 C 0.063 3.937 13 N -0.657 5.657 14 C 0.045 3.955 15 C 0.141 3.859 16 H 0.066 0.934 17 C -0.116 4.116 18 C -0.116 4.116 19 C 0.075 3.925 20 N -0.607 5.607 21 C 0.592 3.408 22 O -0.482 6.482 23 C -0.283 4.283 24 C 0.055 3.945 25 N -0.277 5.277 26 N -0.313 5.313 27 S 0.516 5.484 28 H 0.276 0.724 29 H 0.394 0.606 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.345 0.655 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -28.512 3.369 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.093 0.907 9 N -0.219 5.219 10 C 0.224 3.776 11 O -0.488 6.488 12 C -0.069 4.069 13 N -0.292 5.292 14 C -0.085 4.085 15 C 0.038 3.962 16 H 0.084 0.916 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.048 4.048 20 N -0.343 5.343 21 C 0.376 3.624 22 O -0.354 6.354 23 C -0.424 4.424 24 C -0.112 4.112 25 N -0.141 5.141 26 N -0.293 5.293 27 S 0.651 5.349 28 H 0.086 0.914 29 H 0.227 0.773 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.435 -28.775 5.262 29.287 hybrid contribution -0.442 2.577 -1.950 3.262 sum 0.993 -26.198 3.312 26.425 Atomic orbital electron populations 1.69676 1.06746 1.29033 1.51060 1.25998 0.96553 1.02251 0.96610 0.84903 0.77957 0.77293 0.78372 1.20045 1.19424 1.19593 1.19661 0.92522 0.84200 1.49438 0.90734 1.41954 1.09106 1.04710 1.66179 1.20976 0.88507 0.86144 0.81946 1.90550 1.15504 1.87719 1.55057 1.21531 0.94189 0.89315 1.01914 1.60569 1.16575 0.99986 1.52075 1.22617 0.95933 0.88400 1.01547 1.21786 0.90099 0.95956 0.88359 0.91551 1.22701 0.99103 0.91101 1.02514 1.22766 0.99763 0.96205 0.96650 1.22903 1.01660 0.85116 0.95167 1.48171 1.40930 1.19345 1.25844 1.16221 0.80048 0.82382 0.83741 1.91037 1.63805 1.33495 1.47038 1.28243 1.07038 1.02331 1.04785 1.24480 0.93112 1.01585 0.92015 1.70828 1.24698 1.09107 1.09450 1.78402 1.17603 1.06519 1.26804 1.82014 1.28322 1.20902 1.03664 0.91431 0.77274 0.92478 0.88995 0.83327 0.93086 0.90490 0.88836 0.87911 0.86430 0.89783 0.89175 0.90508 0.77851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.75 13.05 21.67 0.28 -51.47 16 2 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 3 Si 0.99 45.03 29.55 68.60 2.03 47.05 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.33 -19.65 9.68 84.04 0.81 -18.84 16 8 H 0.07 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.58 -31.57 5.29 -306.98 -1.62 -33.19 16 10 C 0.44 22.30 7.82 87.65 0.69 22.98 16 11 O -0.60 -35.83 15.64 -3.07 -0.05 -35.88 16 12 C 0.06 2.33 6.17 85.55 0.53 2.86 16 13 N -0.66 -22.12 2.92 -517.92 -1.51 -23.63 16 14 C 0.04 0.96 5.26 86.30 0.45 1.42 16 15 C 0.14 2.37 3.28 45.34 0.15 2.52 16 16 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.12 -0.78 6.48 31.78 0.21 -0.58 16 18 C -0.12 -0.48 7.08 31.99 0.23 -0.25 16 19 C 0.08 0.74 5.74 86.86 0.50 1.24 16 20 N -0.61 -11.84 3.06 -792.16 -2.43 -14.26 16 21 C 0.59 17.06 7.42 86.59 0.64 17.71 16 22 O -0.48 -18.83 13.02 -4.10 -0.05 -18.88 16 23 C -0.28 -7.36 6.66 24.62 0.16 -7.20 16 24 C 0.05 1.63 11.55 84.78 0.98 2.61 16 25 N -0.28 -8.35 11.54 -57.87 -0.67 -9.02 16 26 N -0.31 -8.06 12.51 37.02 0.46 -7.60 16 27 S 0.52 8.99 19.60 -56.49 -1.11 7.88 16 28 H 0.28 14.42 8.31 -92.72 -0.77 13.65 16 29 H 0.39 20.32 7.90 -92.71 -0.73 19.59 16 30 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.35 13.26 7.16 -89.70 -0.64 12.61 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.56 8.07 -2.39 -0.02 1.54 16 35 H 0.09 0.48 7.80 -2.39 -0.02 0.46 16 36 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.12 -0.10 8.14 -2.38 -0.02 -0.12 16 38 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.63 5.18 -13.75 -0.07 0.56 16 41 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 Total: -1.00 -81.78 354.93 0.81 -80.97 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.33 Total: 33.93 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 5.81 Total: 24.09 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -5.48 Total: -139.17 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -0.10 Total: -54.76 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 8.99 SS G_CDS: -1.11 Total: 7.88 kcal Total: -81.78 0.81 -80.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483924899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.672 kcal (2) G-P(sol) polarization free energy of solvation -81.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds